EWM22610.1, cds8068 (CDS) Nannochloropsis gaditana

Overview
NameEWM22610.1
Unique Namecds8068
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:539850..539980 -
Alignment locationKK037247.1:539202..539703 -
Alignment locationKK037247.1:538767..538998 -
Alignment locationKK037247.1:538295..538632 -
Alignment locationKK037247.1:538089..538151 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22610.1
Productnmda receptor glutamate-binding chain
Orig transcript idgnl|cribi|Naga_100126g14.3036.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:539850..539980 -
KK037247.1supercontigKK037247.1:539202..539703 -
KK037247.1supercontigKK037247.1:538767..538998 -
KK037247.1supercontigKK037247.1:538295..538632 -
KK037247.1supercontigKK037247.1:538089..538151 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR006214Bax_inhibitor_1-related
Homology
BLAST of EWM22610.1 vs. NCBI_GenBank
Match: gi|585103173|gb|EWM22610.1| (nmda receptor glutamate-binding chain [Nannochloropsis gaditana])

HSP 1 Score: 845.884 bits (2184), Expect = 0.000e+0
Identity = 421/421 (100.00%), Postives = 421/421 (100.00%), Query Frame = 0
Query:    1 MMLPDSMDEETAPRYTQLLSAKNQENNMSVDFHPHRVQNIISFVKYREEGKPSRKLALAVESLHWVTLGRMGAMRSLLLLPCIMLSFPAATSCSTVPVEINMYHTSKSGILTGKTPTFCLLKRARGGAVGRSPGSGGSSGSVGLPSFPFFPPTTTTLTPPKSSSSSRSSASVAPAPGVWGFDHFDSRPVVLEPRVVENIKGRDSRVGLIRKVYAILGIQLFLTAAVTFVFFQKPALVSFLFTKGSWVVLLSVLASLGSAIALGMRYSRVFPTNLGLLSLFTAGESVLIGLLTTRYKADAVLLAALQTGAAVTGLSLFAFRKDSKYDLTAFGSSLFAGLLILLMSGVLAFFFKIRIPEVVMGGLGALLFSAFLVYDTQRIVGRGETQLDDRDYVLGAMDLYLDITRIFLYLLRILANENGRE 421
            MMLPDSMDEETAPRYTQLLSAKNQENNMSVDFHPHRVQNIISFVKYREEGKPSRKLALAVESLHWVTLGRMGAMRSLLLLPCIMLSFPAATSCSTVPVEINMYHTSKSGILTGKTPTFCLLKRARGGAVGRSPGSGGSSGSVGLPSFPFFPPTTTTLTPPKSSSSSRSSASVAPAPGVWGFDHFDSRPVVLEPRVVENIKGRDSRVGLIRKVYAILGIQLFLTAAVTFVFFQKPALVSFLFTKGSWVVLLSVLASLGSAIALGMRYSRVFPTNLGLLSLFTAGESVLIGLLTTRYKADAVLLAALQTGAAVTGLSLFAFRKDSKYDLTAFGSSLFAGLLILLMSGVLAFFFKIRIPEVVMGGLGALLFSAFLVYDTQRIVGRGETQLDDRDYVLGAMDLYLDITRIFLYLLRILANENGRE
Sbjct:    1 MMLPDSMDEETAPRYTQLLSAKNQENNMSVDFHPHRVQNIISFVKYREEGKPSRKLALAVESLHWVTLGRMGAMRSLLLLPCIMLSFPAATSCSTVPVEINMYHTSKSGILTGKTPTFCLLKRARGGAVGRSPGSGGSSGSVGLPSFPFFPPTTTTLTPPKSSSSSRSSASVAPAPGVWGFDHFDSRPVVLEPRVVENIKGRDSRVGLIRKVYAILGIQLFLTAAVTFVFFQKPALVSFLFTKGSWVVLLSVLASLGSAIALGMRYSRVFPTNLGLLSLFTAGESVLIGLLTTRYKADAVLLAALQTGAAVTGLSLFAFRKDSKYDLTAFGSSLFAGLLILLMSGVLAFFFKIRIPEVVMGGLGALLFSAFLVYDTQRIVGRGETQLDDRDYVLGAMDLYLDITRIFLYLLRILANENGRE 421          
BLAST of EWM22610.1 vs. NCBI_GenBank
Match: gi|1108476640|emb|CRK95409.1| (CLUMA_CG008720, isoform A [Clunio marinus])

HSP 1 Score: 145.591 bits (366), Expect = 4.401e-37
Identity = 94/276 (34.06%), Postives = 153/276 (55.43%), Query Frame = 0
Query:  148 PFFPPTTTTLTPPKSSSSSRSSASVAPAPGVWGFDHFDSRPVVLEPRVVENIKGRD-----SRVGLIRKVYAILGIQLFLTAAVTFVF-FQKPALVSFLFTKGSWVVLLSVLASLGSAIALGMRYS--RVFPTNLGLLSLFTAGESVLIGLLTTRYKADAVLLAALQTGAAVTGLSLFAFRKDSKYDLTAFGSSLFAGLLILLMSGVLAFFFKIRIPEVVMGGLGALLFSAFLVYDTQRIV-GRGETQLDDRDYVLGAMDLYLDITRIFLYLLRIL 414
            P++PP       P + +     A     P ++       +P  ++P    + KG +      R G IRKVY+IL +QL +T AV  +F F KP   +    +   +V +S+   + + IAL    S  R  P N+  L +FT  ESV++G ++ RY AD V++A   T A   GL+LFAF+  +K+D T  G +LF  ++I+++ G +A FF+ +   +V   LGA+LF  +L+YDTQ ++ G+ +  +   +Y+  A++LYLDI +IF+Y+L IL
Sbjct:   11 PYYPPGFQQQQQPYNPAYPHQQA-----PAIYN----PQQPPYMDPEY-PDAKGFEFDDASIRRGFIRKVYSILTVQLSITLAVISLFVFHKPT--NGFIKQHHEIVWISLGVVVVTMIALACCESVRRKSPMNIIFLGIFTIAESVMMGCMSVRYSADLVMMAVGITAAVCLGLTLFAFQ--TKFDFTVCGGALFVAVIIMVIFGFVAMFFRSKTLTLVQASLGAMLFCVYLIYDTQLMLGGKHKYSISPEEYIFAALNLYLDIIQIFMYILTIL 272          
BLAST of EWM22610.1 vs. NCBI_GenBank
Match: gi|665817191|ref|XP_008557353.1| (PREDICTED: protein lifeguard 1 [Microplitis demolitor] >gi|665817193|ref|XP_008557354.1| PREDICTED: protein lifeguard 1 [Microplitis demolitor] >gi|665817195|ref|XP_008557355.1| PREDICTED: protein lifeguard 1 [Microplitis demolitor])

HSP 1 Score: 140.584 bits (353), Expect = 1.002e-34
Identity = 90/250 (36.00%), Postives = 143/250 (57.20%), Query Frame = 0
Query:  169 SASVAPAPGVWGFDHFDSRPVVLEPRVVENIKGRDSRVGLIRKVYAILGIQLFLTAAVTFVF-FQKPALVSFLFTKG-SWVVLLSVLASLGSAIALGMRYSRVFPTNLGLLSLFTAGESVLIGLLTTRYKADAVLLAALQTGAAVTGLSLFAFRKDSKYDLTAFGSSLFAGLLILLMSGVLAFFFKIRIPEVVMGGLGALLFSAFLVYDTQRIV-GRGETQLDDRDYVLGAMDLYLDITRIFLYLLRILA 415
            +A+ +  PG++G  + D   +  EP+  +    +  R G IRKVYAIL  QL LT  V  +F F +P        +G  W  L+ +  SL   +A      R  P N   L LFT  ES ++G L++RY +  VLLA   T A    L++FAF+  +K+D T  G++LF  ++ L++ G++A F+  +I  +V G +GALLFS +L+YDTQ ++ G+ +  +   +Y+  A++LYLD+  IF+Y+L I+ 
Sbjct:   68 TAAFSHQPGMYGASYGD-EALHDEPKGFD-FSDKTIRQGFIRKVYAILMCQLLLTLGVISLFLFHEPTKRYVQHHEGLFWAALVILFVSL-ICMACCTSVRRKAPMNFIFLFLFTGAESFMLGTLSSRYDSKEVLLAVGITAAICFSLTIFAFQ--TKWDFTGMGAALFVAVICLMLFGIIAMFWHGKIITIVYGTVGALLFSLYLIYDTQLMLGGKHKYSISPEEYIFAALNLYLDVINIFIYILSIIG 312          
BLAST of EWM22610.1 vs. NCBI_GenBank
Match: gi|998521709|ref|XP_015521896.1| (PREDICTED: protein lifeguard 1-like [Neodiprion lecontei] >gi|998521711|ref|XP_015521897.1| PREDICTED: protein lifeguard 1-like [Neodiprion lecontei] >gi|998521713|ref|XP_015521898.1| PREDICTED: protein lifeguard 1-like [Neodiprion lecontei])

HSP 1 Score: 140.969 bits (354), Expect = 1.183e-34
Identity = 98/297 (33.00%), Postives = 154/297 (51.85%), Query Frame = 0
Query:  130 GRSPGSGGSSGSVGLPSFPFFPPTTTTLTPPKSSSSSRSSASVAPAP---GVWGFDHFDSRPVVLEPRVVENIKGRD-----SRVGLIRKVYAILGIQLFLTAAVTFVFFQKPALVSFLFTKGSWVVLLSVLASLGSAIALGM--RYSRVFPTNLGLLSLFTAGESVLIGLLTTRYKADAVLLAALQTGAAVTGLSLFAFRKDSKYDLTAFGSSLFAGLLILLMSGVLAFFFKIRIPEVVMGGLGALLFSAFLVYDTQRIV-GRGETQLDDRDYVLGAMDLYLDITRIFLYLLRILA 415
            G +PG   +      P+  F PP    + PP       S     P P   G++G  +        E  + + IKG D      R G IRKVYAIL +QL +T     +F   P      F++ ++V  ++++A+    IA+       R  P N   L LFT  E +++G  ++ Y+ DAVL+AA  T      L++FAF+  +K+D T     LF  ++ILL+  + AFF K +I  ++   LGAL+FS +LV+DTQ ++ G+ +  +   +Y+  A++LYLDI  IF+Y+L I+A
Sbjct:   49 GYNPGYPPAYPGGNPPAAGFVPP----MNPPYGQVPPNSGTPFTPPPMQAGMYGTSY-------AEDPMQDEIKGFDFSEQSIRRGFIRKVYAILMVQLLITIGFIALFLFHPG-TKHWFSRHTYVFYIALIATFVLLIAMSCCSNLRRQAPMNYIFLLLFTVAEGIVLGAASSTYQVDAVLMAAGITAVVCFALTIFAFQ--TKWDFTLLSGVLFVAVIILLVFSIAAFFVKGKIFTLIYASLGALIFSVYLVFDTQLMMGGKHKYSISPEEYIFAALNLYLDIVNIFIYILTIIA 331          
BLAST of EWM22610.1 vs. NCBI_GenBank
Match: gi|401411069|ref|XP_003884982.1| (Os03g0795800 protein, related [Neospora caninum Liverpool] >gi|325119401|emb|CBZ54954.1| Os03g0795800 protein, related [Neospora caninum Liverpool] >gi|820693936|tpe|CEL69676.1| TPA: Os03g0795800 protein, related [Neospora caninum Liverpool])

HSP 1 Score: 137.117 bits (344), Expect = 6.402e-34
Identity = 99/263 (37.64%), Postives = 143/263 (54.37%), Query Frame = 0
Query:  161 KSSSSSRSSASVAPAPGVWGFDHFDSR----PVVLEPRVVENIKGRDSRVGLIRKVYAILGIQLFLTAAVTFVF-FQKPALVSFLFTKGSWVVLLSVLASLGSAIALGMRY--SRVFPTNLGLLSLFTAGESVLIGLLTTRYKADAVLLAALQTGAAVTGLSLFAFRKDSKYDLTAFGSSLFAGLLILLMSGVLAFFFKIRIPEVVMGGLGALLFSAFLVYDTQRIVGRGETQLDDRDYVLGAMDLYLDITRIFLYLLRILAN 416
             + S +  +  V PAP      ++D          +  + E I  ++ R G IRKVY I+ +QL  TAAVT +F F  P    FL T G  V++ + +  L ++I L      SR FP N  LL +FT  ESVL+  +T  Y    VL+A   T     GLSLFA +   KYD T++   LF   L L++ G+   F   +  +V+   L  LLFS +LV DTQ IVGRG+ +L + DY++ A+ +Y+DI  IFL+LLR++A+
Sbjct:    2 DTKSENSVATGVGPAPAGRMPSYYDPEIGGAARTAQEEIDERIFTKEIRQGFIRKVYTIIALQLITTAAVTALFLFVDPVRAWFL-THGQPVIIAAGVVLLVTSIPLVCCEGASRRFPFNYLLLCVFTLAESVLVAAVTAHYSEKTVLIAVAGTAVITVGLSLFACQ--VKYDFTSWVGVLFIFALNLMIFGLFCIFLP-KWAQVLYSSLALLLFSIYLVVDTQLIVGRGKLRLSEDDYIVAALMIYVDIITIFLHLLRLVAS 260          
BLAST of EWM22610.1 vs. NCBI_GenBank
Match: gi|873236097|emb|CEL99509.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 138.272 bits (347), Expect = 1.182e-33
Identity = 87/222 (39.19%), Postives = 126/222 (56.76%), Query Frame = 0
Query:  203 DSRVGLIRKVYAILGIQLFLTAAVTFVFFQKPALVSFLFTKGSWVVLLSVLASLGSAIALGMRY--SRVFPTNLGLLSLFTAGESVLIGLLTTRYKADAVLLAALQTGAAVTGLSLFAFRKDSKYDLTAFGSSLFAGLLILLMSGVLAFFFKIRIP--EVVMGGLGALLFSAFLVYDTQRIVGRGET--QLDDRDYVLGAMDLYLDITRIFLYLLRILANEN 418
            + R G IRKVY +L IQL +T  +       P   +FL T  SW+ +L+++ + G+ IAL      +R FP N  LL LFTA +  L+G++TT+Y   AV +A   T       +LFA +  +K D T+ G  LF  L++LL+ G++A FF   +P  + V G  GAL+FS +LVYDTQ +VG      +    DYV  A+ LY+DI  IFL++L +    N
Sbjct:  126 EIRHGFIRKVYTVLSIQLLITFGIGCAILYAPGAKTFL-TNNSWLFILALVLTFGTLIALSCCSGPARTFPLNYVLLLLFTAAQGFLVGVVTTQYDITAVGVAVGITAGVFIACTLFAIQ--TKIDFTSKGGYLFVALIVLLLFGIIAAFFIPTVPILQKVYGAAGALIFSLYLVYDTQLLVGGKHRTFEFSVDDYVFAALALYIDIINIFLFILMLFGGSN 344          
BLAST of EWM22610.1 vs. NCBI_GenBank
Match: gi|676389163|ref|XP_009037860.1| (hypothetical protein AURANDRAFT_15453, partial [Aureococcus anophagefferens] >gi|323451347|gb|EGB07224.1| hypothetical protein AURANDRAFT_15453, partial [Aureococcus anophagefferens])

HSP 1 Score: 133.265 bits (334), Expect = 1.277e-33
Identity = 70/142 (49.30%), Postives = 98/142 (69.01%), Query Frame = 0
Query:  272 TNLGLLSLFTAGESVLIGLLTTRYKADAVLLAALQTGAAVTGLSLFAFRKDSKYDLTAFGSSLFAGLLILLMSGVLAFFFKIRIPEVVMGGLGALLFSAFLVYDTQRIVGRGETQLDDRDYVLGAMDLYLDITRIFLYLLRI 413
            ++L L SLF   ES ++G+  + YK  +VLLA LQTGAA   L+ +AF+ ++KYDLT  GS+L AGL++L +S V     K+ +  +    +GALLFSAF+V+DTQ +VG  + QL+  DYVLGA+ LYLDI  +F YLLR+
Sbjct:   28 SSLALFSLFAFAESAVVGVAASAYKLQSVLLALLQTGAATGALTAYAFQPNAKYDLTQVGSALLAGLMVLTVSTVAGVLLKVPMNSLAGSTVGALLFSAFIVHDTQLVVGGKKRQLNTSDYVLGAITLYLDIINLFFYLLRL 169          
BLAST of EWM22610.1 vs. NCBI_GenBank
Match: gi|149632261|ref|XP_001510640.1| (PREDICTED: protein lifeguard 4 [Ornithorhynchus anatinus])

HSP 1 Score: 135.191 bits (339), Expect = 1.600e-33
Identity = 86/216 (39.81%), Postives = 125/216 (57.87%), Query Frame = 0
Query:  205 RVGLIRKVYAILGIQLFLTAAVTFVFFQKPALVSFLFTKGSWVVLLSVLASLGSAIALGMRYSRVFPTNLGLLSLFTAGESVLIGLLTTRYKADAVLLAALQTGAAVTGLSLFAFRKDSKYDLTAFGSSLFAGLLILLMSGVLAFFFKIRIPEVVMGGLGALLFSAFLVYDTQRIVGRGETQLDDRDYVLGAMDLYLDITRIFLYLLRILANENGR 420
            R+  +RKVY+IL +Q+ LT     VF    A+ +F+  +   ++L+SVL S G  IAL   Y    PTNL LL  FT  E++ + +  T Y+   VL A + T A   GL+  A+   SK D + FG+ LFA L ILL+SG L  FF     E++   LGALLF  F++YDT  ++ +    L   +Y+L +++LYLDI  +FL+LLR+L   N +
Sbjct:   31 RMAFLRKVYSILSLQILLTTVTAAVFLYSEAVRTFV-HQSPALILVSVLGSFGLIIALTF-YRHKHPTNLYLLFGFTLLEALTVAVTVTFYEVHVVLQAFMLTAAVFLGLT--AYTLQSKRDFSKFGAGLFAFLWILLLSGFLRLFFYSETVELIFAALGALLFCGFIIYDTHSLMHK----LSPEEYILASINLYLDIINLFLHLLRVLEAVNKK 238          
BLAST of EWM22610.1 vs. NCBI_GenBank
Match: gi|676483760|ref|XP_009063128.1| (hypothetical protein LOTGIDRAFT_220842 [Lottia gigantea] >gi|556097515|gb|ESO86167.1| hypothetical protein LOTGIDRAFT_220842 [Lottia gigantea])

HSP 1 Score: 134.806 bits (338), Expect = 2.269e-33
Identity = 83/219 (37.90%), Postives = 130/219 (59.36%), Query Frame = 0
Query:  202 RDSRVGLIRKVYAILGIQLFLTAAVTFVF-FQKPALVSFLFTKGSWVVLLSVLASLGSAIALGM--RYSRVFPTNLGLLSLFTAGESVLIGLLTTRYKADAVLLAALQTGAAVTGLSLFAFRKDSKYDLTAFGSSLFAGLLILLMSGVLAFFFKIRIPEVVMGGLGALLFSAFLVYDTQRIV-GRGETQLDDRDYVLGAMDLYLDITRIFLYLLRILAN 416
            ++ R+G IRKVYAIL IQL +T  +  +F F  P  V        W+  L+++ ++   I L       R +P N+ LL  FT  E VL+G + + Y+A  V++A   T   V GL++FAF+  +K+D T +G  LF  L++L   G+LA  F+ +I  +V   LGALLFS +LV+DTQ ++ G+ +  L   +Y+  A++LYLD+  +FL++L I+ N
Sbjct:   26 KNVRLGFIRKVYAILCIQLCVTMCIMSLFLFIDP--VRIYSQHNPWIWYLAMVLTIIILIVLACCSDVRRQYPLNMILLGAFTCCEGVLLGAVASHYEAVEVIIAVGVTAIVVLGLTIFAFQ--TKWDFTMWGGILFVFLIVLFCFGILALIFQNKIVNMVYSCLGALLFSFYLVFDTQLMLGGKHKYSLSPEEYIFAALNLYLDVVNLFLFILSIVGN 240          
BLAST of EWM22610.1 vs. NCBI_GenBank
Match: gi|915658634|gb|KOC61741.1| (Protein lifeguard 1, partial [Habropoda laboriosa])

HSP 1 Score: 135.961 bits (341), Expect = 3.024e-33
Identity = 83/250 (33.20%), Postives = 135/250 (54.00%), Query Frame = 0
Query:  174 PAPGVWGFDHFDSRPVVLEPRVVE-NIKGRDSRVGLIRKVYAILGIQLFLTAAVTFVF-FQKPALVSFLFTKGSWVVLLSVLASLGSAIALGMRYSRVFPTNLGLLSLFTAGESVLIGLLTTRYKADAVLLAALQTGAAVTGLSLFAFRKDSKYDLTAFGSSLFAGLLILLMSGVLAFFFKIRIPEVVMGGLGALLFSAFLVYDTQRIVGRGET-QLDDRDYVLGAMDLYLDITRIFLYLLRILANENGR 420
            P PG++G  + +      +P V   +   +  R G IRKVY+IL  QL +T ++  +F + +P     +       + ++++  L   +       R  P N   L +FT  ES L+G +++ YK++ VLLA   T A    L+LF+F+  +KYD TA    LF  L I ++ G++A  ++ R   +V   +GALLFS +LVYDTQ ++G G   Q+   +Y+   ++LY+DI  IFL++L IL +  G 
Sbjct:   50 PQPGMFGSTYSEDHA---QPEVKRFDFSEKSIRNGFIRKVYSILMCQLLITVSMIALFLYHQPTRKWVMVHPEMLWICIALIIVLTICMVCCTTVRRKTPMNFVFLFIFTIAESFLLGTISSLYKSEEVLLAVGITAAVCLALTLFSFQ--TKYDFTALNGILFVALFIFIIFGIVAMIWQGRTMTIVYSSIGALLFSVYLVYDTQMLMGGGHKYQISPEEYIFATLNLYVDIINIFLHILAILGSSRGN 294          
The following BLAST results are available for this feature:
BLAST of EWM22610.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103173|gb|EWM22610.1|0.000e+0100.00nmda receptor glutamate-binding chain [Nannochloro... [more]
gi|1108476640|emb|CRK95409.1|4.401e-3734.06CLUMA_CG008720, isoform A [Clunio marinus][more]
gi|665817191|ref|XP_008557353.1|1.002e-3436.00PREDICTED: protein lifeguard 1 [Microplitis demoli... [more]
gi|998521709|ref|XP_015521896.1|1.183e-3433.00PREDICTED: protein lifeguard 1-like [Neodiprion le... [more]
gi|401411069|ref|XP_003884982.1|6.402e-3437.64Os03g0795800 protein, related [Neospora caninum Li... [more]
gi|873236097|emb|CEL99509.1|1.182e-3339.19unnamed protein product [Vitrella brassicaformis C... [more]
gi|676389163|ref|XP_009037860.1|1.277e-3349.30hypothetical protein AURANDRAFT_15453, partial [Au... [more]
gi|149632261|ref|XP_001510640.1|1.600e-3339.81PREDICTED: protein lifeguard 4 [Ornithorhynchus an... [more]
gi|676483760|ref|XP_009063128.1|2.269e-3337.90hypothetical protein LOTGIDRAFT_220842 [Lottia gig... [more]
gi|915658634|gb|KOC61741.1|3.024e-3333.20Protein lifeguard 1, partial [Habropoda laboriosa][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8090rna8090Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications