EWM22618.1, cds8056 (CDS) Nannochloropsis gaditana

Overview
NameEWM22618.1
Unique Namecds8056
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:516020..516217 +
Alignment locationKK037247.1:516323..516928 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22618.1
ProductEAP30 family protein
Orig transcript idgnl|cribi|Naga_100528g3.9504.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:516020..516217 +
KK037247.1supercontigKK037247.1:516323..516928 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0005768endosome
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR007286EAP30
IPR016689ESCRT-2_cplx_Snf8
Homology
BLAST of EWM22618.1 vs. NCBI_GenBank
Match: gi|585103182|gb|EWM22618.1| (EAP30 family protein [Nannochloropsis gaditana])

HSP 1 Score: 551.206 bits (1419), Expect = 0.000e+0
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0
Query:    1 MRRGYGVKSIKRKEQVKEAFTSLGKELQEENINHVTGLMATFKESLEDFARKHKKDINANPVLRAEFNKMCAGIGVDPLASNKGFWAQLLGVGDFYYELAVQIIEICLFTRSLNGGLICLSDLTQRVQKRRKVDKISTEDIKIAINKVHLLGAGFSLLQSGKTTLVVSVPTELSSDHAAILQMAQASDSHVTVGELVQKLQWVEKRVRLALDLMMQAGMAWLDAQGADGSREVYWFPSLWEEGLCQTQRDRVTGQGGREEGDNRSPG 267
            MRRGYGVKSIKRKEQVKEAFTSLGKELQEENINHVTGLMATFKESLEDFARKHKKDINANPVLRAEFNKMCAGIGVDPLASNKGFWAQLLGVGDFYYELAVQIIEICLFTRSLNGGLICLSDLTQRVQKRRKVDKISTEDIKIAINKVHLLGAGFSLLQSGKTTLVVSVPTELSSDHAAILQMAQASDSHVTVGELVQKLQWVEKRVRLALDLMMQAGMAWLDAQGADGSREVYWFPSLWEEGLCQTQRDRVTGQGGREEGDNRSPG
Sbjct:    1 MRRGYGVKSIKRKEQVKEAFTSLGKELQEENINHVTGLMATFKESLEDFARKHKKDINANPVLRAEFNKMCAGIGVDPLASNKGFWAQLLGVGDFYYELAVQIIEICLFTRSLNGGLICLSDLTQRVQKRRKVDKISTEDIKIAINKVHLLGAGFSLLQSGKTTLVVSVPTELSSDHAAILQMAQASDSHVTVGELVQKLQWVEKRVRLALDLMMQAGMAWLDAQGADGSREVYWFPSLWEEGLCQTQRDRVTGQGGREEGDNRSPG 267          
BLAST of EWM22618.1 vs. NCBI_GenBank
Match: gi|299473151|emb|CBN78727.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 249.595 bits (636), Expect = 2.602e-79
Identity = 128/254 (50.39%), Postives = 176/254 (69.29%), Query Frame = 0
Query:   16 VKEAFTSLGKELQEENINHVTGLMATFKESLEDFARKHKKDINANPVLRAEFNKMCAGIGV-------------------DPLASNKGFWAQLLGVGDFYYELAVQIIEICLFTRSLNGGLICLSDLTQRVQ---KRRKVDKISTEDIKIAINKVHLLGAGFSLLQSGKTTLVVSVPTELSSDHAAILQMAQASDSHVTVGELVQKLQWVEKRVRLALDLMMQAGMAWLD------AQGADGSREVYWFPSLWE 241
             ++AF ++GK + EEN++H++G+MATFK SLE+FARK+KKDIN +P  R +F  MCA IG                    D    N+GFWA++LGVGDFYYELAVQI+E+CL TRS+NGGL+ L +L QR++    R+K  +IST+D++ A +K+ +LG+GFS+L+ GKTT+VVSVP ELSSDH+A+L +A+AS   +T  ++ +KLQW   R R  LD +MQ GMAW+D      A G  G R  Y+FPSLW+
Sbjct:    4 TRQAFEAVGKRVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGCERGRGKERDIARGVEGAKRDRDMHNRGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISTDDVRRATSKLQVLGSGFSVLEIGKTTMVVSVPRELSSDHSAVLLLAEAS-GRITEADISEKLQWEGGRPRRVLDELMQEGMAWVDGDGAGPAMGGGGGRPAYFFPSLWQ 256          
BLAST of EWM22618.1 vs. NCBI_GenBank
Match: gi|857976209|emb|CEO97697.1| (hypothetical protein PBRA_005811 [Plasmodiophora brassicae])

HSP 1 Score: 246.128 bits (627), Expect = 3.816e-78
Identity = 118/241 (48.96%), Postives = 159/241 (65.98%), Query Frame = 0
Query:    1 MRRGYGVKSIKRKEQVKEAFTSLGKELQEENINHVTGLMATFKESLEDFARKHKKDINANPVLRAEFNKMCAGIGVDPLASNKGFWAQLLGVGDFYYELAVQIIEICLFTRSLNGGLICLSDLTQRVQKRR--KVDKISTEDIKIAINKVHLLGAGFSLLQSGKTTLVVSVPTELSSDHAAILQMAQASDSHVTVGELVQKLQWVEKRVRLALDLMMQAGMAWLDAQGADGSREVYWFPSL 239
            MRRG GV  +K++++    F   GKE+++  + HV   +A FKE LE FA KH+ +I +NP  RA+F KMC+ IGVDPLASNKGFW++LLGVGDFYYEL+VQIIEICL TR  NGGL+ L +L  R+++RR      IS +D++ AI KV  LG GF ++      +++SVPTE + DH  +L +AQ SD H ++  L   LQW E R    L L++  G+AW+D    D  +  YWFPSL
Sbjct:    1 MRRGVGVGGLKKQKEAAAKFRQAGKEIEQTQMAHVRASLAVFKEKLESFAIKHRNEIRSNPQFRAQFAKMCSKIGVDPLASNKGFWSELLGVGDFYYELSVQIIEICLATRPQNGGLLSLMELLTRLERRRGASAQAISVDDVRRAIEKVQTLGKGFGIVHVDNRPMILSVPTEFNRDHTDVLAVAQQSDGHTSLQVLGTALQWPEARCEKVLQLLLDLGIAWVDCY--DPQKHEYWFPSL 239          
BLAST of EWM22618.1 vs. NCBI_GenBank
Match: gi|831772485|ref|XP_012753618.1| (hypothetical protein SAMD00019534_063440 [Acytostelium subglobosum LB1] >gi|735854250|dbj|GAM23169.1| hypothetical protein SAMD00019534_063440 [Acytostelium subglobosum LB1])

HSP 1 Score: 242.276 bits (617), Expect = 8.438e-77
Identity = 114/242 (47.11%), Postives = 167/242 (69.01%), Query Frame = 0
Query:    1 MRRGYGVKSIKRKEQVKEAFTSLGKELQEENINHVTGLMATFKESLEDFARKHKKDINANPVLRAEFNKMCAGIGVDPLASNKGFWAQLLGVGDFYYELAVQIIEICLFTRSLNGGLICLSDLTQRVQKRR--KVDKISTEDIKIAINKVHLLGAGFSLLQSGKTTLVVSVPTELSSDHAAILQMAQASDSHVTVGELVQKLQWVEKRVRLALDLMMQAGMAWLDAQGADGSREVYWFPSLW 240
            MRRG G+++I ++ Q ++   ++ ++L  + +  V   + TFK +LE+FA KHKKDI  NP  R  F  MC+ IGVDPLASNKGFW+Q+LGVGDFYY+LAVQIIE+CL  RS NGGLI L+ LT+ ++K R    ++IS +D++++I+K+ +LG G+++ +     +V SVP EL+ DH  +L  AQ+ +  +T  +L  KL W E+R+   LD+++  GMAW+D Q AD    +YWFPSLW
Sbjct:    1 MRRGVGIQAIHKQSQHQKQLQNISEQLSTDQLKKVNEQLITFKNNLEEFALKHKKDIIKNPEFRKHFQDMCSTIGVDPLASNKGFWSQVLGVGDFYYQLAVQIIEVCLKYRSTNGGLIELTTLTEHIRKMRGKSANEISNDDVEVSISKLKVLGNGYNIFKIDSKKIVQSVPVELNKDHTEVLIKAQSHNGSITAAQLA-KLGWNEQRINNVLDVLLTEGMAWIDDQ-ADTKERLYWFPSLW 240          
BLAST of EWM22618.1 vs. NCBI_GenBank
Match: gi|569423077|gb|ETO29770.1| (vacuolar-sorting protein [Reticulomyxa filosa])

HSP 1 Score: 239.58 bits (610), Expect = 1.251e-75
Identity = 115/225 (51.11%), Postives = 156/225 (69.33%), Query Frame = 0
Query:   24 GKELQEENINHVTGLMATFKESLEDFARKHKKDINANPVLRAEFNKMCAGIGVDPLASNKGFWAQLLGVGDFYYELAVQIIEICLFTRSLNGGLICLSDLTQRVQKRR--KVDKISTEDIKIAINKVHLLGAGFSLLQSGKTTLVVSVPTELSSDHAAILQMAQASDSHVTVGELVQKLQWVEKRVRLALDLMMQAGMAWLDAQGADGSREVYWFPSLWEEGLCQ 246
            G ++QE  I  +   ++TFKE LE+FARKHKK+IN +P  RA+FN MC  IGVDPLASNKGFWA +LGVGDFYYEL+VQI+ +CL TR++NGGLI + +L+ +VQ++R  +   +S +DIK AI+KV  LG GF L+  G  T+V SVP EL+ DH+AIL +  ++ +  TV ++ + L W E R++  L+LM+Q GM W D Q   G   +YW PSLW     Q
Sbjct:   32 GAQIQEAKIAEMRQSLSTFKEKLEEFARKHKKEINKDPAFRAQFNDMCLKIGVDPLASNKGFWADILGVGDFYYELSVQIVTVCLQTRNVNGGLIDIYELSHKVQEKRSKQSSAVSLDDIKQAISKVKSLGNGFGLITVGDKTMVKSVPVELNRDHSAILGVC-SNTACTTVPDIKKNLGWPEHRIKEVLELMLQEGMVWTDDQNDQGKETLYWIPSLWNANASQ 255          
BLAST of EWM22618.1 vs. NCBI_GenBank
Match: gi|330842999|ref|XP_003293453.1| (hypothetical protein DICPUDRAFT_42052 [Dictyostelium purpureum] >gi|325076221|gb|EGC30026.1| hypothetical protein DICPUDRAFT_42052 [Dictyostelium purpureum])

HSP 1 Score: 236.884 bits (603), Expect = 8.758e-75
Identity = 112/244 (45.90%), Postives = 160/244 (65.57%), Query Frame = 0
Query:    1 MRRGYGVKSIKRKEQVKEAFTSLGKELQEENINHVTGLMATFKESLEDFARKHKKDINANPVLRAEFNKMCAGIGVDPLASNKGFWAQLLGVGDFYYELAVQIIEICLFTRSLNGGLICLSDLTQRVQKRR--KVDKISTEDIKIAINKVHLLGAGFSLLQSGKTTLVVSVPTELSSDHAAILQMAQASDSHVTVGELVQKLQWVEKRVRLALDLMMQAGMAWLDAQGADGSREVYWFPSLWEE 242
            MRRG G++++  + Q ++   ++  ++  ENIN +   +  FKE+LE FA KHKKDI  NP  R  F  MC  IGVDPLASNKGFW+Q+LGVGDFYY L VQIIEICL  R  NGGL+ ++ L   ++K R     +IS +DI+ +I+K+ +LG GF++++  K  LV SVP EL+ DH  I+ +AQ ++S +T  ++ QKL+W   R+   L+ ++Q  M W+D Q  +    +YWFPSLW E
Sbjct:    1 MRRGVGIQAVHNQTQTQKQLQNVSDQISTENINKIKEQLVIFKENLEQFAIKHKKDITKNPEFRKYFQDMCNMIGVDPLASNKGFWSQVLGVGDFYYTLGVQIIEICLKYRGSNGGLMEMNILADHLRKLRGKNSQEISLDDIETSISKLKVLGNGFNIIKVNKKKLVQSVPCELNKDHTDIIILAQENNSSITESQISQKLKWNNHRINSVLNFLLQESMVWIDDQSTET---IYWFPSLWSE 241          
BLAST of EWM22618.1 vs. NCBI_GenBank
Match: gi|1072945182|ref|XP_018483182.1| (PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1-like [Raphanus sativus])

HSP 1 Score: 233.802 bits (595), Expect = 1.821e-73
Identity = 116/241 (48.13%), Postives = 165/241 (68.46%), Query Frame = 0
Query:    1 MRRGYGVKSIKRKEQVKEAFTSLGKELQEENINHVTGLMATFKESLEDFARKHKKDINANPVLRAEFNKMCAGIGVDPLASNKGFWAQLLGVGDFYYELAVQIIEICLFTRSLNGGLICLSDLTQRVQKRRKVDK--ISTEDIKIAINKVHLLGAGFSLLQSGKTTLVVSVPTELSSDHAAILQMAQASDSHVTVGELVQKLQWVEKRVRLALDLMMQAGMAWLDAQGADGSREVYWFPSL 239
            MRR  G+  +++    ++ +  LG+ + +   + +   +ATFK  LE+FARKHK DI  NP  RA+F++MCA +GVDPLASNKGFWA+LLG+GDFYYEL VQIIE+C+ TRSLNGGLI L +L   +++RRK D+  ++ +D   AI+K+ +LG+GF ++  GK  LV SVPTEL+ DH  IL++AQ     VTV E+ ++L W   RV  ALD +++ G+A +D    DG  + YWFP +
Sbjct:    1 MRRRPGIGGLQKAAAARDQYRLLGENVAKLRTDMMKEQLATFKSQLEEFARKHKNDIRKNPAFRAQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIIEVCMLTRSLNGGLISLQELCSHLRQRRKKDREAVTEDDCLRAISKLKVLGSGFEVITIGKKKLVRSVPTELNKDHNQILELAQGQ-GFVTVEEVQRRLSWSSGRVIDALDTLLEEGLAMIDNGNKDGICQ-YWFPCV 239          
BLAST of EWM22618.1 vs. NCBI_GenBank
Match: gi|1072912210|ref|XP_018455301.1| (PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Raphanus sativus])

HSP 1 Score: 233.802 bits (595), Expect = 1.944e-73
Identity = 115/241 (47.72%), Postives = 165/241 (68.46%), Query Frame = 0
Query:    1 MRRGYGVKSIKRKEQVKEAFTSLGKELQEENINHVTGLMATFKESLEDFARKHKKDINANPVLRAEFNKMCAGIGVDPLASNKGFWAQLLGVGDFYYELAVQIIEICLFTRSLNGGLICLSDLTQRVQKRRKVDK--ISTEDIKIAINKVHLLGAGFSLLQSGKTTLVVSVPTELSSDHAAILQMAQASDSHVTVGELVQKLQWVEKRVRLALDLMMQAGMAWLDAQGADGSREVYWFPSL 239
            MRR  G+  +++    ++ +  LG+ + +   + +   +ATFK  LE+FARKHK DI  NP  RA+F++MCA +GVDPLASNKGFWA+LLG+GDFYYEL VQIIE+C+ TRSLNGGLI L +L   +++RRK D+  ++ +D   AI+K+ +LG+GF ++  GK  LV SVPTEL+ DH  IL++AQ     VTV E+ ++L W   RV  AL+ +++ G+A +D    DG  + YWFP +
Sbjct:    1 MRRRPGIGGLQKAAAARDQYRLLGENVAKLRTDMMKEQLATFKSQLEEFARKHKNDIRKNPAFRAQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIIEVCMLTRSLNGGLISLQELCSHLRQRRKKDREAVTEDDCLRAISKLKVLGSGFEVITIGKKKLVRSVPTELNKDHNQILELAQGQ-GFVTVEEVQRRLSWTSGRVIDALETLLEEGLAMIDNGSKDGKCQ-YWFPCV 239          
BLAST of EWM22618.1 vs. NCBI_GenBank
Match: gi|217074064|gb|ACJ85392.1| (unknown [Medicago truncatula] >gi|388492282|gb|AFK34207.1| unknown [Medicago truncatula])

HSP 1 Score: 233.417 bits (594), Expect = 2.550e-73
Identity = 115/241 (47.72%), Postives = 162/241 (67.22%), Query Frame = 0
Query:    1 MRRGYGVKSIKRKEQVKEAFTSLGKELQEENINHVTGLMATFKESLEDFARKHKKDINANPVLRAEFNKMCAGIGVDPLASNKGFWAQLLGVGDFYYELAVQIIEICLFTRSLNGGLICLSDLTQRVQKRRKVDK--ISTEDIKIAINKVHLLGAGFSLLQSGKTTLVVSVPTELSSDHAAILQMAQASDSHVTVGELVQKLQWVEKRVRLALDLMMQAGMAWLDAQGADGSREVYWFPSL 239
            MRR  G+  ++     ++ +  LG+ + +   + +   ++TF+  LEDFARKHK DI  NP  R++F++MCA +GVDPLASNKGFWA+LLG+GDFYYEL VQI++ICL TR LNGGLI L +L Q +++RRK D+  +S +D   AI+K+ +LG+GF ++  GK  LV SVPTEL+ DH  IL++AQ     VTV E+ ++L W   R   ALD ++  G+A +D    DG R  YWFP +
Sbjct:    1 MRRRPGIGGLQTAAAARDQYKKLGENVAKTRTDMMREQLSTFRSQLEDFARKHKNDIRKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPLNGGLINLQELCQLLRQRRKSDRGVVSEDDCLRAISKLKVLGSGFEVISVGKKKLVRSVPTELNKDHNEILELAQGQ-GFVTVDEVERRLSWTSGRAIDALDTLLDEGLAMIDDGHKDGKRR-YWFPCV 239          
BLAST of EWM22618.1 vs. NCBI_GenBank
Match: gi|922342380|ref|XP_013448115.1| (vacuolar sorting protein SNF8 [Medicago truncatula] >gi|657377237|gb|KEH22142.1| vacuolar sorting protein SNF8 [Medicago truncatula])

HSP 1 Score: 233.417 bits (594), Expect = 2.752e-73
Identity = 115/241 (47.72%), Postives = 164/241 (68.05%), Query Frame = 0
Query:    1 MRRGYGVKSIKRKEQVKEAFTSLGKELQEENINHVTGLMATFKESLEDFARKHKKDINANPVLRAEFNKMCAGIGVDPLASNKGFWAQLLGVGDFYYELAVQIIEICLFTRSLNGGLICLSDLTQRVQKRRKVDK--ISTEDIKIAINKVHLLGAGFSLLQSGKTTLVVSVPTELSSDHAAILQMAQASDSHVTVGELVQKLQWVEKRVRLALDLMMQAGMAWLDAQGADGSREVYWFPSL 239
            MRR  G+  ++     ++ +  LG+ + +   + +   ++TF+  LEDFARKHK DI  NP  R++F++MCA +GVDPLASNKGFWA+LLG+GDFYYEL VQI++ICL TR LNGGLI L +L+Q +++RRK D+  +S +D   AI+K+ +LG+GF ++  GK  LV SVPTEL+ DH  IL++AQ     VTV E+ ++L W+  R   ALD ++  G+A +D    DG R  YWFP +
Sbjct:    1 MRRRPGIGGLQTAAAARDQYKKLGENVAKIRTDMMKEQLSTFRSQLEDFARKHKNDIRKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPLNGGLINLQELSQLLRQRRKSDRGVVSEDDCLRAISKLKVLGSGFEVISVGKKKLVRSVPTELNKDHNEILELAQGQ-GFVTVDEVEKRLSWILGRAIDALDTLLDEGLAMIDDGHKDGKRR-YWFPCV 239          
The following BLAST results are available for this feature:
BLAST of EWM22618.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103182|gb|EWM22618.1|0.000e+0100.00EAP30 family protein [Nannochloropsis gaditana][more]
gi|299473151|emb|CBN78727.1|2.602e-7950.39conserved unknown protein [Ectocarpus siliculosus][more]
gi|857976209|emb|CEO97697.1|3.816e-7848.96hypothetical protein PBRA_005811 [Plasmodiophora b... [more]
gi|831772485|ref|XP_012753618.1|8.438e-7747.11hypothetical protein SAMD00019534_063440 [Acytoste... [more]
gi|569423077|gb|ETO29770.1|1.251e-7551.11vacuolar-sorting protein [Reticulomyxa filosa][more]
gi|330842999|ref|XP_003293453.1|8.758e-7545.90hypothetical protein DICPUDRAFT_42052 [Dictyosteli... [more]
gi|1072945182|ref|XP_018483182.1|1.821e-7348.13PREDICTED: vacuolar protein sorting-associated pro... [more]
gi|1072912210|ref|XP_018455301.1|1.944e-7347.72PREDICTED: vacuolar protein sorting-associated pro... [more]
gi|217074064|gb|ACJ85392.1|2.550e-7347.72unknown [Medicago truncatula] >gi|388492282|gb|AFK... [more]
gi|922342380|ref|XP_013448115.1|2.752e-7347.72vacuolar sorting protein SNF8 [Medicago truncatula... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8078rna8078Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications