EWM22666.1, cds8012 (CDS) Nannochloropsis gaditana

Overview
NameEWM22666.1
Unique Namecds8012
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:402953..402999 -
Alignment locationKK037247.1:401868..402323 -
Alignment locationKK037247.1:399837..401550 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22666.1
ProductTesmin/TSO1-like cysteine-rich
Orig transcript idgnl|cribi|Naga_100023g22.3982.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:402953..402999 -
KK037247.1supercontigKK037247.1:401868..402323 -
KK037247.1supercontigKK037247.1:399837..401550 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR028307Lin-54_fam
IPR005172CRC
Homology
BLAST of EWM22666.1 vs. NCBI_GenBank
Match: gi|585103231|gb|EWM22666.1| (Tesmin/TSO1-like cysteine-rich [Nannochloropsis gaditana])

HSP 1 Score: 1524.61 bits (3946), Expect = 0.000e+0
Identity = 738/738 (100.00%), Postives = 738/738 (100.00%), Query Frame = 0
Query:    1 MKLGGNMKEQPCLPNKSRTWSWDTSRFESNFARGSTRRSPFFLRSLPPSTMSTTGCKPSSASSTPRRHTPNRRVVRTLNGQELSISIPDNFHQQHMHITHHLQQQHCQQLQQPGSANSMMVSPALPSPNFNNFMLTLSPLMQLSSPQPTMSPRDEMGVSSNGGIPSSMAHMVGTADEIQFAFQTGNEVATPTVTSTTNNNTASLNLAPPPLPTQALMPPPPPRVRPPREQEGDLESQGHEGSRHERKGLDDFQGLEQHEQQQQLLEREEEIDPHNQHLPVAAPEALGGGDGALADKLNLMHMVMVDAECIMEGKGSLMGPTTPTMQGVGMESYPRSLVMGLGAGEAFDASDSDEGEKGECEDGGTGEGMFGKHLERRVVQLYGYGVENEEDEEIYEAEGGYISSSSECTKTTLEHLQQEHRGAHNHKHPNHSPSPAVPGISRSQGQGPSAAAMAAAAAATSSRSRCNLSSQRRNQSSNNSHPGGSSRPVRVEAAIRRQNPSQEARRSPPLNGSGGGTPQGRGTSGLAATRSSKKCNCRKSKCLKLYCECFAMGAYCRDDCGCLDCNNTLAFEQVRTQAVESILSRNPHAFTEKIQFIETGATGPVAMGTHRRTSLPGGQCSVGDNGETTMMGGLQGTAGGALPTAAHVRGCNCKKSLCIKKYCECFFAGVYCGENCQCEGCQNNPEASAGLHVKKKRGSTTHGKGQHPKQVQRRQQASPSLSDSHDLTPTRVTGTAVI 738
            MKLGGNMKEQPCLPNKSRTWSWDTSRFESNFARGSTRRSPFFLRSLPPSTMSTTGCKPSSASSTPRRHTPNRRVVRTLNGQELSISIPDNFHQQHMHITHHLQQQHCQQLQQPGSANSMMVSPALPSPNFNNFMLTLSPLMQLSSPQPTMSPRDEMGVSSNGGIPSSMAHMVGTADEIQFAFQTGNEVATPTVTSTTNNNTASLNLAPPPLPTQALMPPPPPRVRPPREQEGDLESQGHEGSRHERKGLDDFQGLEQHEQQQQLLEREEEIDPHNQHLPVAAPEALGGGDGALADKLNLMHMVMVDAECIMEGKGSLMGPTTPTMQGVGMESYPRSLVMGLGAGEAFDASDSDEGEKGECEDGGTGEGMFGKHLERRVVQLYGYGVENEEDEEIYEAEGGYISSSSECTKTTLEHLQQEHRGAHNHKHPNHSPSPAVPGISRSQGQGPSAAAMAAAAAATSSRSRCNLSSQRRNQSSNNSHPGGSSRPVRVEAAIRRQNPSQEARRSPPLNGSGGGTPQGRGTSGLAATRSSKKCNCRKSKCLKLYCECFAMGAYCRDDCGCLDCNNTLAFEQVRTQAVESILSRNPHAFTEKIQFIETGATGPVAMGTHRRTSLPGGQCSVGDNGETTMMGGLQGTAGGALPTAAHVRGCNCKKSLCIKKYCECFFAGVYCGENCQCEGCQNNPEASAGLHVKKKRGSTTHGKGQHPKQVQRRQQASPSLSDSHDLTPTRVTGTAVI
Sbjct:    1 MKLGGNMKEQPCLPNKSRTWSWDTSRFESNFARGSTRRSPFFLRSLPPSTMSTTGCKPSSASSTPRRHTPNRRVVRTLNGQELSISIPDNFHQQHMHITHHLQQQHCQQLQQPGSANSMMVSPALPSPNFNNFMLTLSPLMQLSSPQPTMSPRDEMGVSSNGGIPSSMAHMVGTADEIQFAFQTGNEVATPTVTSTTNNNTASLNLAPPPLPTQALMPPPPPRVRPPREQEGDLESQGHEGSRHERKGLDDFQGLEQHEQQQQLLEREEEIDPHNQHLPVAAPEALGGGDGALADKLNLMHMVMVDAECIMEGKGSLMGPTTPTMQGVGMESYPRSLVMGLGAGEAFDASDSDEGEKGECEDGGTGEGMFGKHLERRVVQLYGYGVENEEDEEIYEAEGGYISSSSECTKTTLEHLQQEHRGAHNHKHPNHSPSPAVPGISRSQGQGPSAAAMAAAAAATSSRSRCNLSSQRRNQSSNNSHPGGSSRPVRVEAAIRRQNPSQEARRSPPLNGSGGGTPQGRGTSGLAATRSSKKCNCRKSKCLKLYCECFAMGAYCRDDCGCLDCNNTLAFEQVRTQAVESILSRNPHAFTEKIQFIETGATGPVAMGTHRRTSLPGGQCSVGDNGETTMMGGLQGTAGGALPTAAHVRGCNCKKSLCIKKYCECFFAGVYCGENCQCEGCQNNPEASAGLHVKKKRGSTTHGKGQHPKQVQRRQQASPSLSDSHDLTPTRVTGTAVI 738          
BLAST of EWM22666.1 vs. NCBI_GenBank
Match: gi|553196017|ref|XP_005856249.1| (tesmin tso1-like cxc domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|422292803|gb|EKU20105.1| tesmin tso1-like cxc domain-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 753.051 bits (1943), Expect = 0.000e+0
Identity = 364/365 (99.73%), Postives = 365/365 (100.00%), Query Frame = 0
Query:  374 LERRVVQLYGYGVENEEDEEIYEAEGGYISSSSECTKTTLEHLQQEHRGAHNHKHPNHSPSPAVPGISRSQGQGPSAAAMAAAAAATSSRSRCNLSSQRRNQSSNNSHPGGSSRPVRVEAAIRRQNPSQEARRSPPLNGSGGGTPQGRGTSGLAATRSSKKCNCRKSKCLKLYCECFAMGAYCRDDCGCLDCNNTLAFEQVRTQAVESILSRNPHAFTEKIQFIETGATGPVAMGTHRRTSLPGGQCSVGDNGETTMMGGLQGTAGGALPTAAHVRGCNCKKSLCIKKYCECFFAGVYCGENCQCEGCQNNPEASAGLHVKKKRGSTTHGKGQHPKQVQRRQQASPSLSDSHDLTPTRVTGTAVI 738
            +ERRVVQLYGYGVENEEDEEIYEAEGGYISSSSECTKTTLEHLQQEHRGAHNHKHPNHSPSPAVPGISRSQGQGPSAAAMAAAAAATSSRSRCNLSSQRRNQSSNNSHPGGSSRPVRVEAAIRRQNPSQEARRSPPLNGSGGGTPQGRGTSGLAATRSSKKCNCRKSKCLKLYCECFAMGAYCRDDCGCLDCNNTLAFEQVRTQAVESILSRNPHAFTEKIQFIETGATGPVAMGTHRRTSLPGGQCSVGDNGETTMMGGLQGTAGGALPTAAHVRGCNCKKSLCIKKYCECFFAGVYCGENCQCEGCQNNPEASAGLHVKKKRGSTTHGKGQHPKQVQRRQQASPSLSDSHDLTPTRVTGTAVI
Sbjct:    1 MERRVVQLYGYGVENEEDEEIYEAEGGYISSSSECTKTTLEHLQQEHRGAHNHKHPNHSPSPAVPGISRSQGQGPSAAAMAAAAAATSSRSRCNLSSQRRNQSSNNSHPGGSSRPVRVEAAIRRQNPSQEARRSPPLNGSGGGTPQGRGTSGLAATRSSKKCNCRKSKCLKLYCECFAMGAYCRDDCGCLDCNNTLAFEQVRTQAVESILSRNPHAFTEKIQFIETGATGPVAMGTHRRTSLPGGQCSVGDNGETTMMGGLQGTAGGALPTAAHVRGCNCKKSLCIKKYCECFFAGVYCGENCQCEGCQNNPEASAGLHVKKKRGSTTHGKGQHPKQVQRRQQASPSLSDSHDLTPTRVTGTAVI 365          
BLAST of EWM22666.1 vs. NCBI_GenBank
Match: gi|695444263|ref|XP_009533925.1| (hypothetical protein PHYSODRAFT_520155 [Phytophthora sojae] >gi|348671359|gb|EGZ11180.1| hypothetical protein PHYSODRAFT_520155 [Phytophthora sojae])

HSP 1 Score: 157.147 bits (396), Expect = 5.355e-36
Identity = 88/180 (48.89%), Postives = 107/180 (59.44%), Query Frame = 0
Query:  513 SGGGTPQGRGTSGLAATRSSKK--CNCRKSKCLKLYCECFAMGAYCRDDCGCLDCNNTLAFEQVRTQAVESILSRNPHAFTEKIQFIETGATGPVAMGTHRRTSL---PGGQCSVGD----NGETTMMGGLQGTAGGALPTAAHVRGCNCKKSLCIKKYCECFFAGVYCGENCQCEGCQN 683
            S    P G    G+A T+  KK  CNC+KSKCLKLYCECFA G YC + C CLDC+NT A E+VR QA+ + L +NP+AF  KI     GAT  +  G+ RR S+    G   S G     +G   +    Q  + G L T  H  GC+CKKS C KKYCECF AGV CGENC+C  C+N
Sbjct:  544 SASKAPLGPAPVGMA-TQVPKKAPCNCKKSKCLKLYCECFASGGYCDESCNCLDCSNTPATEEVRQQAIAARLEKNPNAFKPKI-----GATPGMTPGSARRLSVGASGGSHASPGTFLSPSGRLNLQQQHQLLSAGLLSTKMHKHGCHCKKSACQKKYCECFQAGVPCGENCRCIDCKN 717          
BLAST of EWM22666.1 vs. NCBI_GenBank
Match: gi|566014296|gb|ETI37207.1| (hypothetical protein F443_16782 [Phytophthora parasitica P1569] >gi|568039817|gb|ETM37293.1| hypothetical protein L914_16140 [Phytophthora parasitica] >gi|570317999|gb|ETO65947.1| hypothetical protein F444_16794 [Phytophthora parasitica P1976])

HSP 1 Score: 153.68 bits (387), Expect = 8.837e-35
Identity = 81/155 (52.26%), Postives = 96/155 (61.94%), Query Frame = 0
Query:  535 CNCRKSKCLKLYCECFAMGAYCRDDCGCLDCNNTLAFEQVRTQAVESILSRNPHAFTEKIQFIETGATGPVAMGT--HRRTSLPGGQCSVGDN----GETTMMGGLQGTAGGALPTAAHVRGCNCKKSLCIKKYCECFFAGVYCGENCQCEGCQN 683
            CNC+KSKCLKLYCECFA G YC + C CLDC NT A E+VR QA+ S L +NP+AF  KI     GAT  V   T   RR S+ G + S G      G+ ++    Q  + G   T  H  GC+CKKS C KKYCECF AGV CGENC+C  C+N
Sbjct:  657 CNCKKSKCLKLYCECFASGGYCDESCNCLDCANTTATEEVRQQAIASRLEKNPNAFKPKI-----GATSTVVTVTPGARRLSV-GRRVSAGAFVSPPGQLSLQRQ-QILSAGMSTTKMHKHGCHCKKSACQKKYCECFQAGVPCGENCRCIDCKN 804          
BLAST of EWM22666.1 vs. NCBI_GenBank
Match: gi|567951720|gb|ETK77414.1| (hypothetical protein L915_16315 [Phytophthora parasitica])

HSP 1 Score: 153.295 bits (386), Expect = 9.076e-35
Identity = 79/157 (50.32%), Postives = 91/157 (57.96%), Query Frame = 0
Query:  535 CNCRKSKCLKLYCECFAMGAYCRDDCGCLDCNNTLAFEQVRTQAVESILSRNPHAFTEKIQFIETGAT---GPVAMGTHRRTSL-----PGGQCSVGDNGETTMMGGLQGTAGGALPTAAHVRGCNCKKSLCIKKYCECFFAGVYCGENCQCEGCQN 683
            CNC+KSKCLKLYCECFA G YC + C CLDC NT A E+VR QA+ S L +NP+AF  KI    T  T   G   +   RR S      P GQ S+            Q  + G   T  H  GC+CKKS C KKYCECF AGV CGENC+C  C+N
Sbjct:  657 CNCKKSKCLKLYCECFASGGYCDESCNCLDCANTTATEEVRQQAIASRLEKNPNAFKPKIGATSTVVTVTPGARRLSVGRRVSAGAFVSPPGQLSLQRQ---------QILSAGMSTTKMHKHGCHCKKSACQKKYCECFQAGVPCGENCRCIDCKN 804          
BLAST of EWM22666.1 vs. NCBI_GenBank
Match: gi|970632129|gb|KUF78512.1| (lin-54 protein [Phytophthora nicotianae])

HSP 1 Score: 152.525 bits (384), Expect = 1.949e-34
Identity = 81/155 (52.26%), Postives = 95/155 (61.29%), Query Frame = 0
Query:  535 CNCRKSKCLKLYCECFAMGAYCRDDCGCLDCNNTLAFEQVRTQAVESILSRNPHAFTEKIQFIETGATGPVAMGT--HRRTSLPGGQCSVGDN----GETTMMGGLQGTAGGALPTAAHVRGCNCKKSLCIKKYCECFFAGVYCGENCQCEGCQN 683
            CNC+KSKCLKLYCECFA G YC + C CLDC NT A E+VR QA+ S L +NP+AF  KI     GAT  V   T   RR S+ G + S G      G+ ++    Q    G   T  H  GC+CKKS C KKYCECF AGV CGENC+C  C+N
Sbjct:  657 CNCKKSKCLKLYCECFASGGYCDESCNCLDCANTTATEEVRQQAIASRLEKNPNAFKPKI-----GATSTVVTVTPGARRLSV-GRRVSAGAFVSPPGQLSLQRQ-QILNAGMSTTKMHKHGCHCKKSACQKKYCECFQAGVPCGENCRCIDCKN 804          
BLAST of EWM22666.1 vs. NCBI_GenBank
Match: gi|675206299|ref|XP_008912034.1| (hypothetical protein PPTG_16173 [Phytophthora parasitica INRA-310] >gi|568087684|gb|ETN02552.1| hypothetical protein PPTG_16173 [Phytophthora parasitica INRA-310])

HSP 1 Score: 152.525 bits (384), Expect = 1.949e-34
Identity = 81/155 (52.26%), Postives = 95/155 (61.29%), Query Frame = 0
Query:  535 CNCRKSKCLKLYCECFAMGAYCRDDCGCLDCNNTLAFEQVRTQAVESILSRNPHAFTEKIQFIETGATGPVAMGT--HRRTSLPGGQCSVGDN----GETTMMGGLQGTAGGALPTAAHVRGCNCKKSLCIKKYCECFFAGVYCGENCQCEGCQN 683
            CNC+KSKCLKLYCECFA G YC + C CLDC NT A E+VR QA+ S L +NP+AF  KI     GAT  V   T   RR S+ G + S G      G+ ++    Q    G   T  H  GC+CKKS C KKYCECF AGV CGENC+C  C+N
Sbjct:  657 CNCKKSKCLKLYCECFASGGYCDESCNCLDCANTTATEEVRQQAIASRLEKNPNAFKPKI-----GATSTVVTVTPGARRLSV-GRRVSAGAFVSPPGQLSLQRQ-QILNAGMSTTKMHKHGCHCKKSACQKKYCECFQAGVPCGENCRCIDCKN 804          
BLAST of EWM22666.1 vs. NCBI_GenBank
Match: gi|570972181|gb|ETP35153.1| (hypothetical protein F442_16610 [Phytophthora parasitica P10297])

HSP 1 Score: 152.525 bits (384), Expect = 1.966e-34
Identity = 81/155 (52.26%), Postives = 95/155 (61.29%), Query Frame = 0
Query:  535 CNCRKSKCLKLYCECFAMGAYCRDDCGCLDCNNTLAFEQVRTQAVESILSRNPHAFTEKIQFIETGATGPVAMGT--HRRTSLPGGQCSVGDN----GETTMMGGLQGTAGGALPTAAHVRGCNCKKSLCIKKYCECFFAGVYCGENCQCEGCQN 683
            CNC+KSKCLKLYCECFA G YC + C CLDC NT A E+VR QA+ S L +NP+AF  KI     GAT  V   T   RR S+ G + S G      G+ ++    Q    G   T  H  GC+CKKS C KKYCECF AGV CGENC+C  C+N
Sbjct:  657 CNCKKSKCLKLYCECFASGGYCDESCNCLDCANTTATEEVRQQAIASRLEKNPNAFKPKI-----GATSTVVTVTPGARRLSV-GRRVSAGAFVSPPGQLSLQRQ-QILNAGMSTTKMHKHGCHCKKSACQKKYCECFQAGVPCGENCRCIDCKN 804          
BLAST of EWM22666.1 vs. NCBI_GenBank
Match: gi|568009918|gb|ETL84113.1| (hypothetical protein L917_16020 [Phytophthora parasitica])

HSP 1 Score: 152.525 bits (384), Expect = 1.983e-34
Identity = 79/157 (50.32%), Postives = 90/157 (57.32%), Query Frame = 0
Query:  535 CNCRKSKCLKLYCECFAMGAYCRDDCGCLDCNNTLAFEQVRTQAVESILSRNPHAFTEKIQFIETGAT---GPVAMGTHRRTSL-----PGGQCSVGDNGETTMMGGLQGTAGGALPTAAHVRGCNCKKSLCIKKYCECFFAGVYCGENCQCEGCQN 683
            CNC+KSKCLKLYCECFA G YC + C CLDC NT A E+VR QA+ S L +NP+AF  KI    T  T   G   +   RR S      P GQ S+            Q    G   T  H  GC+CKKS C KKYCECF AGV CGENC+C  C+N
Sbjct:  657 CNCKKSKCLKLYCECFASGGYCDESCNCLDCANTTATEEVRQQAIASRLEKNPNAFKPKIGATSTVVTVTPGARRLSVGRRVSAGAFVSPPGQLSLQRQ---------QILNAGMSTTKMHKHGCHCKKSACQKKYCECFQAGVPCGENCRCIDCKN 804          
BLAST of EWM22666.1 vs. NCBI_GenBank
Match: gi|567980403|gb|ETL30866.1| (hypothetical protein L916_16211 [Phytophthora parasitica])

HSP 1 Score: 152.525 bits (384), Expect = 2.092e-34
Identity = 81/155 (52.26%), Postives = 95/155 (61.29%), Query Frame = 0
Query:  535 CNCRKSKCLKLYCECFAMGAYCRDDCGCLDCNNTLAFEQVRTQAVESILSRNPHAFTEKIQFIETGATGPVAMGT--HRRTSLPGGQCSVGDN----GETTMMGGLQGTAGGALPTAAHVRGCNCKKSLCIKKYCECFFAGVYCGENCQCEGCQN 683
            CNC+KSKCLKLYCECFA G YC + C CLDC NT A E+VR QA+ S L +NP+AF  KI     GAT  V   T   RR S+ G + S G      G+ ++    Q    G   T  H  GC+CKKS C KKYCECF AGV CGENC+C  C+N
Sbjct:  657 CNCKKSKCLKLYCECFASGGYCDESCNCLDCANTTATEEVRQQAIASRLEKNPNAFKPKI-----GATSTVVTVTPGARRLSV-GRRVSAGAFVSPPGQLSLQRQ-QILNAGMSTTKMHKHGCHCKKSACQKKYCECFQAGVPCGENCRCIDCKN 804          
The following BLAST results are available for this feature:
BLAST of EWM22666.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103231|gb|EWM22666.1|0.000e+0100.00Tesmin/TSO1-like cysteine-rich [Nannochloropsis ga... [more]
gi|553196017|ref|XP_005856249.1|0.000e+099.73tesmin tso1-like cxc domain-containing protein [Na... [more]
gi|695444263|ref|XP_009533925.1|5.355e-3648.89hypothetical protein PHYSODRAFT_520155 [Phytophtho... [more]
gi|566014296|gb|ETI37207.1|8.837e-3552.26hypothetical protein F443_16782 [Phytophthora para... [more]
gi|567951720|gb|ETK77414.1|9.076e-3550.32hypothetical protein L915_16315 [Phytophthora para... [more]
gi|970632129|gb|KUF78512.1|1.949e-3452.26lin-54 protein [Phytophthora nicotianae][more]
gi|675206299|ref|XP_008912034.1|1.949e-3452.26hypothetical protein PPTG_16173 [Phytophthora para... [more]
gi|570972181|gb|ETP35153.1|1.966e-3452.26hypothetical protein F442_16610 [Phytophthora para... [more]
gi|568009918|gb|ETL84113.1|1.983e-3450.32hypothetical protein L917_16020 [Phytophthora para... [more]
gi|567980403|gb|ETL30866.1|2.092e-3452.26hypothetical protein L916_16211 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8034rna8034Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications