EWM22655.1, cds8002 (CDS) Nannochloropsis gaditana

Overview
NameEWM22655.1
Unique Namecds8002
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:383520..383550 -
Alignment locationKK037247.1:379555..383114 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22655.1
ProductOvarian tumor, otubain
Orig transcript idgnl|cribi|Naga_100023g11.3971.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:383520..383550 -
KK037247.1supercontigKK037247.1:379555..383114 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom
Homology
BLAST of EWM22655.1 vs. NCBI_GenBank
Match: gi|585103220|gb|EWM22655.1| (Ovarian tumor, otubain [Nannochloropsis gaditana])

HSP 1 Score: 2472.97 bits (6408), Expect = 0.000e+0
Identity = 1196/1196 (100.00%), Postives = 1196/1196 (100.00%), Query Frame = 0
Query:    1 MTLSYKDLVLGLCVNADTHDDAECTQQSVRTRDIALQGKGQQLVCINSPNSGMTPVIDDIAAQGDSRARQREQTGALDPLCTKGGGSQGCGGTDQPFQVEALGRFDFRLKPTNFAPGFKTVRSTMLMDWDSIKLWYQGQNLLRDLERREYVAAGLRWSPFMPFPPAGEPVVRRPIEPLDEEEGQALRVLRDLGVNLRPVSVDGDGSCLVHAVSTALTGSQIYSDALRWAAHKELRDHAAFYRQAGFVTDQDKARFLPRLDKAAREARARGQDDRERSMRQAATEMRKFDNVKTGRPKWTAAFVEEAVEKARPSEGEARGPAQYLEEIHVAALANAVRRPIMILAEGFQGGLFLPLRHDPEDCRLLAIHSPDRRDRTSGQTEDETWADALAVPPVFIFLQYNHYIPLVQQDPRDFWTWAAGPESGLEGDEAALEALRMYESERGTANHRIPEFVEEILTMCVGIAAQGMEEMLATYQVPATDREMYRQAFGKPELMKALPLMVVFEETPARCEKSVRNLKTMNALFRALGLEVDDDDLPTVRDVVFLSLYIHRVDFSRYRHLVWALYYLMSCEHQSVDASSLVDLATTTTTSPASPAPLAGTARSSPTARAFNSTSCIGRSKKLTSISKGDKKSHTFPSHVSFSAVTTDSILQDTGRIAAAPSMSHSTSLQQSYPHIATAGIHVFPRGLLPSSGDLDQKVFKFVLNYSQNDDLNLGLARLYCEAEGWDLRLMLRPSRDPKDFLTKEMARLERRFQRLTGLDYRRVMDEDLTQDGRTVGALGGVEATASAEPRARVPKALAVLQNAIRTRPYPGRGAVLSSHVLLEQPNPDLLSWCLLEGESTTTSVNSCDEGICNVSSASSTSSNGPFISSNAGSNQMDVARNAFEGGGLASFLLPLAQIFLQHTDARRELLKELLRRGLPQNQQFEQVACAVLLPERFNEARTRFCFLDWILNAADAGLPNVEKKQHPAAHHRAVKKIIVRPLTSPACVPPLAALFSPQHAIRREQKPALAAPASSEQYRQQMVQPEPPSWSTVQDSSSLPPLSPPFPSPTSGSGSNLVVLKTYRPECDERHHGREEEKKLQQHCRPIQYHIPSDVHPSCTPSCSPAHKKVAWSVKLGDGTDVCTAHVQGNGGRKGIGRAVENIGIDATNSKSRREHLVQKPSKVLPGKTSSQTVGGIQQGKEFGVLGKRGISSPL 1196
            MTLSYKDLVLGLCVNADTHDDAECTQQSVRTRDIALQGKGQQLVCINSPNSGMTPVIDDIAAQGDSRARQREQTGALDPLCTKGGGSQGCGGTDQPFQVEALGRFDFRLKPTNFAPGFKTVRSTMLMDWDSIKLWYQGQNLLRDLERREYVAAGLRWSPFMPFPPAGEPVVRRPIEPLDEEEGQALRVLRDLGVNLRPVSVDGDGSCLVHAVSTALTGSQIYSDALRWAAHKELRDHAAFYRQAGFVTDQDKARFLPRLDKAAREARARGQDDRERSMRQAATEMRKFDNVKTGRPKWTAAFVEEAVEKARPSEGEARGPAQYLEEIHVAALANAVRRPIMILAEGFQGGLFLPLRHDPEDCRLLAIHSPDRRDRTSGQTEDETWADALAVPPVFIFLQYNHYIPLVQQDPRDFWTWAAGPESGLEGDEAALEALRMYESERGTANHRIPEFVEEILTMCVGIAAQGMEEMLATYQVPATDREMYRQAFGKPELMKALPLMVVFEETPARCEKSVRNLKTMNALFRALGLEVDDDDLPTVRDVVFLSLYIHRVDFSRYRHLVWALYYLMSCEHQSVDASSLVDLATTTTTSPASPAPLAGTARSSPTARAFNSTSCIGRSKKLTSISKGDKKSHTFPSHVSFSAVTTDSILQDTGRIAAAPSMSHSTSLQQSYPHIATAGIHVFPRGLLPSSGDLDQKVFKFVLNYSQNDDLNLGLARLYCEAEGWDLRLMLRPSRDPKDFLTKEMARLERRFQRLTGLDYRRVMDEDLTQDGRTVGALGGVEATASAEPRARVPKALAVLQNAIRTRPYPGRGAVLSSHVLLEQPNPDLLSWCLLEGESTTTSVNSCDEGICNVSSASSTSSNGPFISSNAGSNQMDVARNAFEGGGLASFLLPLAQIFLQHTDARRELLKELLRRGLPQNQQFEQVACAVLLPERFNEARTRFCFLDWILNAADAGLPNVEKKQHPAAHHRAVKKIIVRPLTSPACVPPLAALFSPQHAIRREQKPALAAPASSEQYRQQMVQPEPPSWSTVQDSSSLPPLSPPFPSPTSGSGSNLVVLKTYRPECDERHHGREEEKKLQQHCRPIQYHIPSDVHPSCTPSCSPAHKKVAWSVKLGDGTDVCTAHVQGNGGRKGIGRAVENIGIDATNSKSRREHLVQKPSKVLPGKTSSQTVGGIQQGKEFGVLGKRGISSPL
Sbjct:    1 MTLSYKDLVLGLCVNADTHDDAECTQQSVRTRDIALQGKGQQLVCINSPNSGMTPVIDDIAAQGDSRARQREQTGALDPLCTKGGGSQGCGGTDQPFQVEALGRFDFRLKPTNFAPGFKTVRSTMLMDWDSIKLWYQGQNLLRDLERREYVAAGLRWSPFMPFPPAGEPVVRRPIEPLDEEEGQALRVLRDLGVNLRPVSVDGDGSCLVHAVSTALTGSQIYSDALRWAAHKELRDHAAFYRQAGFVTDQDKARFLPRLDKAAREARARGQDDRERSMRQAATEMRKFDNVKTGRPKWTAAFVEEAVEKARPSEGEARGPAQYLEEIHVAALANAVRRPIMILAEGFQGGLFLPLRHDPEDCRLLAIHSPDRRDRTSGQTEDETWADALAVPPVFIFLQYNHYIPLVQQDPRDFWTWAAGPESGLEGDEAALEALRMYESERGTANHRIPEFVEEILTMCVGIAAQGMEEMLATYQVPATDREMYRQAFGKPELMKALPLMVVFEETPARCEKSVRNLKTMNALFRALGLEVDDDDLPTVRDVVFLSLYIHRVDFSRYRHLVWALYYLMSCEHQSVDASSLVDLATTTTTSPASPAPLAGTARSSPTARAFNSTSCIGRSKKLTSISKGDKKSHTFPSHVSFSAVTTDSILQDTGRIAAAPSMSHSTSLQQSYPHIATAGIHVFPRGLLPSSGDLDQKVFKFVLNYSQNDDLNLGLARLYCEAEGWDLRLMLRPSRDPKDFLTKEMARLERRFQRLTGLDYRRVMDEDLTQDGRTVGALGGVEATASAEPRARVPKALAVLQNAIRTRPYPGRGAVLSSHVLLEQPNPDLLSWCLLEGESTTTSVNSCDEGICNVSSASSTSSNGPFISSNAGSNQMDVARNAFEGGGLASFLLPLAQIFLQHTDARRELLKELLRRGLPQNQQFEQVACAVLLPERFNEARTRFCFLDWILNAADAGLPNVEKKQHPAAHHRAVKKIIVRPLTSPACVPPLAALFSPQHAIRREQKPALAAPASSEQYRQQMVQPEPPSWSTVQDSSSLPPLSPPFPSPTSGSGSNLVVLKTYRPECDERHHGREEEKKLQQHCRPIQYHIPSDVHPSCTPSCSPAHKKVAWSVKLGDGTDVCTAHVQGNGGRKGIGRAVENIGIDATNSKSRREHLVQKPSKVLPGKTSSQTVGGIQQGKEFGVLGKRGISSPL 1196          
BLAST of EWM22655.1 vs. NCBI_GenBank
Match: gi|260782362|ref|XP_002586257.1| (hypothetical protein BRAFLDRAFT_288920 [Branchiostoma floridae] >gi|229271356|gb|EEN42268.1| hypothetical protein BRAFLDRAFT_288920, partial [Branchiostoma floridae])

HSP 1 Score: 68.9366 bits (167), Expect = 6.200e-9
Identity = 55/182 (30.22%), Postives = 85/182 (46.70%), Query Frame = 0
Query:  196 LRPVSVDGDGSCLVHAVSTALTGSQIYSDALRWAAHKELRDHAAFYRQAGFVTDQDKARFLPRLDKAAREARARGQDDRERSMRQAATEMRKFDNVKTGRPKWTAAF-VEEAVEKARPSEGEARG-PAQYLEEIHVAALANAVRRPIMILAE----GFQG---------GLFLPLRHDPEDC 362
            L P+   GDG+CL+HAVS  ++G+     ALR    + +R+          + ++ K R+                 DR+   R AA       +++ G  +W   + +   +  A P+  EA   P + LEE H+  LAN +RRPI+ILAE     F+G         G++LPLR  PE+C
Sbjct:   90 LTPIQTLGDGNCLLHAVSVYMSGTDDKDLALRRLLFRAMRED---------MNEEMKQRW-----------------DRQCRARNAAVP----GHLEYGSMEWRDEWNIMVCMADATPNPPEANDLPYKSLEEFHIFVLANVLRRPIIILAEDVLHNFEGHTFAPIHFSGIYLPLRWKPEEC 241          
BLAST of EWM22655.1 vs. NCBI_GenBank
Match: gi|1126226602|ref|XP_019647738.1| (PREDICTED: LOW QUALITY PROTEIN: tumor necrosis factor alpha-induced protein 3-like [Branchiostoma belcheri])

HSP 1 Score: 67.3958 bits (163), Expect = 1.763e-7
Identity = 55/181 (30.39%), Postives = 81/181 (44.75%), Query Frame = 0
Query:  196 LRPVSVDGDGSCLVHAVSTALTGSQIYSDALRWAAHKELRDHAAFYRQAGFVTDQDKARFLPRLDKAAREARARGQDDRERSMRQAATEMRKFDNVKTGRPKWTAAFVEEAVEKARPSEGEARG-PAQYLEEIHVAALANAVRRPIMILAE----GFQG---------GLFLPLRHDPEDC 362
            L P+   GDG+CL+HAVS  + G+     ALR    + +R+          ++++ K R+                 DR+   R AA            R +W    +   +  A P+  EA   P + LEE H+  LAN +RRPI+ILAE     F+G         G++LPLR  PE+C
Sbjct:   90 LTPIQTLGDGNCLLHAVSVYMCGTDDKDLALRRLLFRAMRED---------MSEEMKQRW-----------------DRQCRARNAAVPGHLEYGSMEWRDEWN---IMVCMADATPNPPEANDLPYKSLEEFHIFVLANILRRPIIILAEDVLHNFEGHTFAPIHFSGIYLPLRWKPEEC 241          
BLAST of EWM22655.1 vs. NCBI_GenBank
Match: gi|919032262|ref|XP_013399776.1| (PREDICTED: LOW QUALITY PROTEIN: tumor necrosis factor alpha-induced protein 3-like [Lingula anatina])

HSP 1 Score: 65.855 bits (159), Expect = 4.705e-7
Identity = 54/183 (29.51%), Postives = 77/183 (42.08%), Query Frame = 0
Query:  196 LRPVSVDGDGSCLVHAVSTALTGSQIYSDALRWAAHKELRDHAAFYRQAGFVT---DQDKARFLPRLDKAAREARARGQDDRERSMRQAATEMRKFDNVKTGRPKWTAAFVEEAVEKARPSEGEARGPAQYLEEIHVAALANAVRRPIMILAE-------------GFQGGLFLPLRHDPEDC 362
            L  VS  GDG+CL+HAVS  + G Q               D   F R+  +VT   D+   +F  R     RE  A+ +D             R++D V           V  A +  +P+      P + LEE H+  LAN +RRPI+IL +              + GG++LPL   P+DC
Sbjct:   97 LYAVSTTGDGNCLLHAVSLGMWGVQ---------------DETLFLRRLIYVTLVDDEGTGKFKQRW---MRERAAQNEDIPGNFRYNTGEWEREWDTV-----------VRIAKDVKKPNRCADELPYESLEEAHIFVLANILRRPIIILCDSVIRNIQEVTVGPNYFGGIYLPLLWKPQDC 250          
The following BLAST results are available for this feature:
BLAST of EWM22655.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585103220|gb|EWM22655.1|0.000e+0100.00Ovarian tumor, otubain [Nannochloropsis gaditana][more]
gi|260782362|ref|XP_002586257.1|6.200e-930.22hypothetical protein BRAFLDRAFT_288920 [Branchiost... [more]
gi|1126226602|ref|XP_019647738.1|1.763e-730.39PREDICTED: LOW QUALITY PROTEIN: tumor necrosis fac... [more]
gi|919032262|ref|XP_013399776.1|4.705e-729.51PREDICTED: LOW QUALITY PROTEIN: tumor necrosis fac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8024rna8024Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications