EWM22655.1, cds8002 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22655.1 vs. NCBI_GenBank
Match: gi|585103220|gb|EWM22655.1| (Ovarian tumor, otubain [Nannochloropsis gaditana]) HSP 1 Score: 2472.97 bits (6408), Expect = 0.000e+0 Identity = 1196/1196 (100.00%), Postives = 1196/1196 (100.00%), Query Frame = 0
Query: 1 MTLSYKDLVLGLCVNADTHDDAECTQQSVRTRDIALQGKGQQLVCINSPNSGMTPVIDDIAAQGDSRARQREQTGALDPLCTKGGGSQGCGGTDQPFQVEALGRFDFRLKPTNFAPGFKTVRSTMLMDWDSIKLWYQGQNLLRDLERREYVAAGLRWSPFMPFPPAGEPVVRRPIEPLDEEEGQALRVLRDLGVNLRPVSVDGDGSCLVHAVSTALTGSQIYSDALRWAAHKELRDHAAFYRQAGFVTDQDKARFLPRLDKAAREARARGQDDRERSMRQAATEMRKFDNVKTGRPKWTAAFVEEAVEKARPSEGEARGPAQYLEEIHVAALANAVRRPIMILAEGFQGGLFLPLRHDPEDCRLLAIHSPDRRDRTSGQTEDETWADALAVPPVFIFLQYNHYIPLVQQDPRDFWTWAAGPESGLEGDEAALEALRMYESERGTANHRIPEFVEEILTMCVGIAAQGMEEMLATYQVPATDREMYRQAFGKPELMKALPLMVVFEETPARCEKSVRNLKTMNALFRALGLEVDDDDLPTVRDVVFLSLYIHRVDFSRYRHLVWALYYLMSCEHQSVDASSLVDLATTTTTSPASPAPLAGTARSSPTARAFNSTSCIGRSKKLTSISKGDKKSHTFPSHVSFSAVTTDSILQDTGRIAAAPSMSHSTSLQQSYPHIATAGIHVFPRGLLPSSGDLDQKVFKFVLNYSQNDDLNLGLARLYCEAEGWDLRLMLRPSRDPKDFLTKEMARLERRFQRLTGLDYRRVMDEDLTQDGRTVGALGGVEATASAEPRARVPKALAVLQNAIRTRPYPGRGAVLSSHVLLEQPNPDLLSWCLLEGESTTTSVNSCDEGICNVSSASSTSSNGPFISSNAGSNQMDVARNAFEGGGLASFLLPLAQIFLQHTDARRELLKELLRRGLPQNQQFEQVACAVLLPERFNEARTRFCFLDWILNAADAGLPNVEKKQHPAAHHRAVKKIIVRPLTSPACVPPLAALFSPQHAIRREQKPALAAPASSEQYRQQMVQPEPPSWSTVQDSSSLPPLSPPFPSPTSGSGSNLVVLKTYRPECDERHHGREEEKKLQQHCRPIQYHIPSDVHPSCTPSCSPAHKKVAWSVKLGDGTDVCTAHVQGNGGRKGIGRAVENIGIDATNSKSRREHLVQKPSKVLPGKTSSQTVGGIQQGKEFGVLGKRGISSPL 1196
MTLSYKDLVLGLCVNADTHDDAECTQQSVRTRDIALQGKGQQLVCINSPNSGMTPVIDDIAAQGDSRARQREQTGALDPLCTKGGGSQGCGGTDQPFQVEALGRFDFRLKPTNFAPGFKTVRSTMLMDWDSIKLWYQGQNLLRDLERREYVAAGLRWSPFMPFPPAGEPVVRRPIEPLDEEEGQALRVLRDLGVNLRPVSVDGDGSCLVHAVSTALTGSQIYSDALRWAAHKELRDHAAFYRQAGFVTDQDKARFLPRLDKAAREARARGQDDRERSMRQAATEMRKFDNVKTGRPKWTAAFVEEAVEKARPSEGEARGPAQYLEEIHVAALANAVRRPIMILAEGFQGGLFLPLRHDPEDCRLLAIHSPDRRDRTSGQTEDETWADALAVPPVFIFLQYNHYIPLVQQDPRDFWTWAAGPESGLEGDEAALEALRMYESERGTANHRIPEFVEEILTMCVGIAAQGMEEMLATYQVPATDREMYRQAFGKPELMKALPLMVVFEETPARCEKSVRNLKTMNALFRALGLEVDDDDLPTVRDVVFLSLYIHRVDFSRYRHLVWALYYLMSCEHQSVDASSLVDLATTTTTSPASPAPLAGTARSSPTARAFNSTSCIGRSKKLTSISKGDKKSHTFPSHVSFSAVTTDSILQDTGRIAAAPSMSHSTSLQQSYPHIATAGIHVFPRGLLPSSGDLDQKVFKFVLNYSQNDDLNLGLARLYCEAEGWDLRLMLRPSRDPKDFLTKEMARLERRFQRLTGLDYRRVMDEDLTQDGRTVGALGGVEATASAEPRARVPKALAVLQNAIRTRPYPGRGAVLSSHVLLEQPNPDLLSWCLLEGESTTTSVNSCDEGICNVSSASSTSSNGPFISSNAGSNQMDVARNAFEGGGLASFLLPLAQIFLQHTDARRELLKELLRRGLPQNQQFEQVACAVLLPERFNEARTRFCFLDWILNAADAGLPNVEKKQHPAAHHRAVKKIIVRPLTSPACVPPLAALFSPQHAIRREQKPALAAPASSEQYRQQMVQPEPPSWSTVQDSSSLPPLSPPFPSPTSGSGSNLVVLKTYRPECDERHHGREEEKKLQQHCRPIQYHIPSDVHPSCTPSCSPAHKKVAWSVKLGDGTDVCTAHVQGNGGRKGIGRAVENIGIDATNSKSRREHLVQKPSKVLPGKTSSQTVGGIQQGKEFGVLGKRGISSPL
Sbjct: 1 MTLSYKDLVLGLCVNADTHDDAECTQQSVRTRDIALQGKGQQLVCINSPNSGMTPVIDDIAAQGDSRARQREQTGALDPLCTKGGGSQGCGGTDQPFQVEALGRFDFRLKPTNFAPGFKTVRSTMLMDWDSIKLWYQGQNLLRDLERREYVAAGLRWSPFMPFPPAGEPVVRRPIEPLDEEEGQALRVLRDLGVNLRPVSVDGDGSCLVHAVSTALTGSQIYSDALRWAAHKELRDHAAFYRQAGFVTDQDKARFLPRLDKAAREARARGQDDRERSMRQAATEMRKFDNVKTGRPKWTAAFVEEAVEKARPSEGEARGPAQYLEEIHVAALANAVRRPIMILAEGFQGGLFLPLRHDPEDCRLLAIHSPDRRDRTSGQTEDETWADALAVPPVFIFLQYNHYIPLVQQDPRDFWTWAAGPESGLEGDEAALEALRMYESERGTANHRIPEFVEEILTMCVGIAAQGMEEMLATYQVPATDREMYRQAFGKPELMKALPLMVVFEETPARCEKSVRNLKTMNALFRALGLEVDDDDLPTVRDVVFLSLYIHRVDFSRYRHLVWALYYLMSCEHQSVDASSLVDLATTTTTSPASPAPLAGTARSSPTARAFNSTSCIGRSKKLTSISKGDKKSHTFPSHVSFSAVTTDSILQDTGRIAAAPSMSHSTSLQQSYPHIATAGIHVFPRGLLPSSGDLDQKVFKFVLNYSQNDDLNLGLARLYCEAEGWDLRLMLRPSRDPKDFLTKEMARLERRFQRLTGLDYRRVMDEDLTQDGRTVGALGGVEATASAEPRARVPKALAVLQNAIRTRPYPGRGAVLSSHVLLEQPNPDLLSWCLLEGESTTTSVNSCDEGICNVSSASSTSSNGPFISSNAGSNQMDVARNAFEGGGLASFLLPLAQIFLQHTDARRELLKELLRRGLPQNQQFEQVACAVLLPERFNEARTRFCFLDWILNAADAGLPNVEKKQHPAAHHRAVKKIIVRPLTSPACVPPLAALFSPQHAIRREQKPALAAPASSEQYRQQMVQPEPPSWSTVQDSSSLPPLSPPFPSPTSGSGSNLVVLKTYRPECDERHHGREEEKKLQQHCRPIQYHIPSDVHPSCTPSCSPAHKKVAWSVKLGDGTDVCTAHVQGNGGRKGIGRAVENIGIDATNSKSRREHLVQKPSKVLPGKTSSQTVGGIQQGKEFGVLGKRGISSPL 1196
BLAST of EWM22655.1 vs. NCBI_GenBank
Match: gi|260782362|ref|XP_002586257.1| (hypothetical protein BRAFLDRAFT_288920 [Branchiostoma floridae] >gi|229271356|gb|EEN42268.1| hypothetical protein BRAFLDRAFT_288920, partial [Branchiostoma floridae]) HSP 1 Score: 68.9366 bits (167), Expect = 6.200e-9 Identity = 55/182 (30.22%), Postives = 85/182 (46.70%), Query Frame = 0
Query: 196 LRPVSVDGDGSCLVHAVSTALTGSQIYSDALRWAAHKELRDHAAFYRQAGFVTDQDKARFLPRLDKAAREARARGQDDRERSMRQAATEMRKFDNVKTGRPKWTAAF-VEEAVEKARPSEGEARG-PAQYLEEIHVAALANAVRRPIMILAE----GFQG---------GLFLPLRHDPEDC 362
L P+ GDG+CL+HAVS ++G+ ALR + +R+ + ++ K R+ DR+ R AA +++ G +W + + + A P+ EA P + LEE H+ LAN +RRPI+ILAE F+G G++LPLR PE+C
Sbjct: 90 LTPIQTLGDGNCLLHAVSVYMSGTDDKDLALRRLLFRAMRED---------MNEEMKQRW-----------------DRQCRARNAAVP----GHLEYGSMEWRDEWNIMVCMADATPNPPEANDLPYKSLEEFHIFVLANVLRRPIIILAEDVLHNFEGHTFAPIHFSGIYLPLRWKPEEC 241
BLAST of EWM22655.1 vs. NCBI_GenBank
Match: gi|1126226602|ref|XP_019647738.1| (PREDICTED: LOW QUALITY PROTEIN: tumor necrosis factor alpha-induced protein 3-like [Branchiostoma belcheri]) HSP 1 Score: 67.3958 bits (163), Expect = 1.763e-7 Identity = 55/181 (30.39%), Postives = 81/181 (44.75%), Query Frame = 0
Query: 196 LRPVSVDGDGSCLVHAVSTALTGSQIYSDALRWAAHKELRDHAAFYRQAGFVTDQDKARFLPRLDKAAREARARGQDDRERSMRQAATEMRKFDNVKTGRPKWTAAFVEEAVEKARPSEGEARG-PAQYLEEIHVAALANAVRRPIMILAE----GFQG---------GLFLPLRHDPEDC 362
L P+ GDG+CL+HAVS + G+ ALR + +R+ ++++ K R+ DR+ R AA R +W + + A P+ EA P + LEE H+ LAN +RRPI+ILAE F+G G++LPLR PE+C
Sbjct: 90 LTPIQTLGDGNCLLHAVSVYMCGTDDKDLALRRLLFRAMRED---------MSEEMKQRW-----------------DRQCRARNAAVPGHLEYGSMEWRDEWN---IMVCMADATPNPPEANDLPYKSLEEFHIFVLANILRRPIIILAEDVLHNFEGHTFAPIHFSGIYLPLRWKPEEC 241
BLAST of EWM22655.1 vs. NCBI_GenBank
Match: gi|919032262|ref|XP_013399776.1| (PREDICTED: LOW QUALITY PROTEIN: tumor necrosis factor alpha-induced protein 3-like [Lingula anatina]) HSP 1 Score: 65.855 bits (159), Expect = 4.705e-7 Identity = 54/183 (29.51%), Postives = 77/183 (42.08%), Query Frame = 0
Query: 196 LRPVSVDGDGSCLVHAVSTALTGSQIYSDALRWAAHKELRDHAAFYRQAGFVT---DQDKARFLPRLDKAAREARARGQDDRERSMRQAATEMRKFDNVKTGRPKWTAAFVEEAVEKARPSEGEARGPAQYLEEIHVAALANAVRRPIMILAE-------------GFQGGLFLPLRHDPEDC 362
L VS GDG+CL+HAVS + G Q D F R+ +VT D+ +F R RE A+ +D R++D V V A + +P+ P + LEE H+ LAN +RRPI+IL + + GG++LPL P+DC
Sbjct: 97 LYAVSTTGDGNCLLHAVSLGMWGVQ---------------DETLFLRRLIYVTLVDDEGTGKFKQRW---MRERAAQNEDIPGNFRYNTGEWEREWDTV-----------VRIAKDVKKPNRCADELPYESLEEAHIFVLANILRRPIIILCDSVIRNIQEVTVGPNYFGGIYLPLLWKPQDC 250 The following BLAST results are available for this feature:
BLAST of EWM22655.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|