EWM22691.1, cds7992 (CDS) Nannochloropsis gaditana

Overview
NameEWM22691.1
Unique Namecds7992
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:354897..355185 -
Alignment locationKK037247.1:354718..354745 -
Alignment locationKK037247.1:354442..354634 -
Alignment locationKK037247.1:354239..354339 -
Alignment locationKK037247.1:353843..354149 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22691.1
ProductRibosomal protein L7Ae/L8/Nhp2 family
Orig transcript idgnl|cribi|Naga_100218g11.5303.mrna
Generpp38
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:354897..355185 -
KK037247.1supercontigKK037247.1:354718..354745 -
KK037247.1supercontigKK037247.1:354442..354634 -
KK037247.1supercontigKK037247.1:354239..354339 -
KK037247.1supercontigKK037247.1:353843..354149 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like
IPR018492Ribosomal_L7Ae/L8/Nhp2
Homology
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|585103257|gb|EWM22691.1| (Ribosomal protein L7Ae/L8/Nhp2 family [Nannochloropsis gaditana])

HSP 1 Score: 625.935 bits (1613), Expect = 0.000e+0
Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0
Query:    1 MVRPGVAHESKQSQKRPFFHSGVVSPLSARAATAFGSPDETSATAPASASHPQHGAQEEEEQLPQQKHRHKSHVDERKKSKKEDLAVGINAWITMPSTERDIFVDRCRKEIAPLLGAIPPAGTLRGEEEAHTDDIGRRGRCAPMHGITGGDRTRKKAKLRVQKVFSYRDGTAQHKFARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFRGGELMRRLKKGENDTDGSDNDAERVVMDDVRSRLQSFLDFLLTKQDYMNAVRID 305
            MVRPGVAHESKQSQKRPFFHSGVVSPLSARAATAFGSPDETSATAPASASHPQHGAQEEEEQLPQQKHRHKSHVDERKKSKKEDLAVGINAWITMPSTERDIFVDRCRKEIAPLLGAIPPAGTLRGEEEAHTDDIGRRGRCAPMHGITGGDRTRKKAKLRVQKVFSYRDGTAQHKFARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFRGGELMRRLKKGENDTDGSDNDAERVVMDDVRSRLQSFLDFLLTKQDYMNAVRID
Sbjct:    1 MVRPGVAHESKQSQKRPFFHSGVVSPLSARAATAFGSPDETSATAPASASHPQHGAQEEEEQLPQQKHRHKSHVDERKKSKKEDLAVGINAWITMPSTERDIFVDRCRKEIAPLLGAIPPAGTLRGEEEAHTDDIGRRGRCAPMHGITGGDRTRKKAKLRVQKVFSYRDGTAQHKFARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFRGGELMRRLKKGENDTDGSDNDAERVVMDDVRSRLQSFLDFLLTKQDYMNAVRID 305          
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|410905399|ref|XP_003966179.1| (PREDICTED: ribonuclease P protein subunit p38 [Takifugu rubripes] >gi|768921950|ref|XP_011603943.1| PREDICTED: ribonuclease P protein subunit p38 [Takifugu rubripes])

HSP 1 Score: 87.0409 bits (214), Expect = 2.250e-16
Identity = 37/75 (49.33%), Postives = 56/75 (74.67%), Query Frame = 0
Query:  177 ARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFR 251
            AR+ + IGINEVT+ALER+EL L+L+C+ V+P  ++EH+  L+  RDVP   +P+ + ++ + LGLK + ALGFR
Sbjct:  102 ARRKLAIGINEVTKALERNELKLLLVCKSVKPQHMMEHLITLSTTRDVPACQVPRLSQSVSEPLGLKSVLALGFR 176          
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|657789069|ref|XP_008321293.1| (PREDICTED: ribonuclease P protein subunit p38 [Cynoglossus semilaevis])

HSP 1 Score: 85.8853 bits (211), Expect = 6.918e-16
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 0
Query:  177 ARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFR 251
            AR+ + IGINEVT+ALER+E+SL+L+C+ V+P  +  H+  L A R VP   +P+ +S++ Q LGLK + A+GFR
Sbjct:   99 ARRQLAIGINEVTKALERNEISLVLVCKSVKPQHMTNHLITLCATRGVPACQVPRLSSSVSQPLGLKSVLAIGFR 173          
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|27656760|gb|AAO20904.1| (RNase P38 [Takifugu rubripes])

HSP 1 Score: 85.5001 bits (210), Expect = 9.095e-16
Identity = 37/75 (49.33%), Postives = 56/75 (74.67%), Query Frame = 0
Query:  177 ARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFR 251
            AR+ + IGINEVT+ALER+EL L+L+C+ V+P  ++EH+  L+  RDVP   +P+ + ++ + LGLK + ALGFR
Sbjct:  102 ARRKLAIGINEVTKALERNELKLLLVCKCVKPQHMMEHLITLSTTRDVPACQVPRLSQSVSEPLGLKSVLALGFR 176          
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|49904624|gb|AAH76374.1| (Ribonuclease P/MRP 38 subunit [Danio rerio] >gi|182891480|gb|AAI64604.1| Rpp38 protein [Danio rerio])

HSP 1 Score: 85.5001 bits (210), Expect = 9.131e-16
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 0
Query:  178 RQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFRGG 253
            R+ + IGINEVT+ LER+ELSL+L+C  V PA +  H+  L+  R VP   +P  + +L + LGLKC+ ALGFR G
Sbjct:  107 RKQLAIGINEVTKGLERNELSLVLVCNSVTPAHMTSHLIPLSKTRSVPACQVPGLSGSLSELLGLKCVLALGFRRG 182          
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|315113850|ref|NP_001002525.2| (ribonuclease P protein subunit p38 [Danio rerio])

HSP 1 Score: 85.1149 bits (209), Expect = 1.116e-15
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 0
Query:  178 RQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFRGG 253
            R+ + IGINEVT+ LER+ELSL+L+C  V PA +  H+  L+  R VP   +P  + +L + LGLKC+ ALGFR G
Sbjct:  107 RKQLAIGINEVTKGLERNELSLVLVCNSVTPAHMTSHLIPLSKTRSVPACQVPGLSGSLSELLGLKCVLALGFRRG 182          
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|1020478571|ref|XP_016144660.1| (PREDICTED: ribonuclease P protein subunit p38 [Sinocyclocheilus grahami] >gi|1020478573|ref|XP_016144661.1| PREDICTED: ribonuclease P protein subunit p38 [Sinocyclocheilus grahami])

HSP 1 Score: 85.1149 bits (209), Expect = 1.308e-15
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 0
Query:  177 ARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGF-RGGELM 256
            AR+ + IGINEVT+ LER+ELSL+L+C  VRPA +  H+  L+  R VP   +P  + +L   LGLKC+ ALGF RG E+ 
Sbjct:  109 ARKQLAIGINEVTKGLERNELSLVLVCNSVRPAHMTCHLIPLSKTRSVPACQVPSLSESLAGLLGLKCVLALGFKRGAEVF 189          
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|1101575040|ref|XP_018953209.1| (PREDICTED: LOW QUALITY PROTEIN: ribonuclease P protein subunit p38-like [Cyprinus carpio])

HSP 1 Score: 85.1149 bits (209), Expect = 1.504e-15
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 0
Query:  160 RVQKVFSYRDGTAQHKFARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFRGG 253
            RVQ      +    +   R+ + +GINEVT+ LER+ELSL+L+C  VRPA +  H+  L+  R VP   +P  + +L   LGLKC+ ALGFR G
Sbjct:   94 RVQTPSKPTEPCWTNPAVRKQLAVGINEVTKGLERNELSLVLVCNSVRPAHMTCHLIPLSKTRSVPACQVPSLSESLAGLLGLKCVLALGFRRG 187          
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|1168909980|ref|XP_020497626.1| (ribonuclease P protein subunit p38 [Labrus bergylta] >gi|1168909982|ref|XP_020497627.1| ribonuclease P protein subunit p38 [Labrus bergylta])

HSP 1 Score: 84.3445 bits (207), Expect = 2.368e-15
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 0
Query:  177 ARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFR 251
            AR+ + IGINEVT+ALER+EL L+L+C+ VRP  + +H+  L+A R VP   +P+ + +L   LGLK + ALGFR
Sbjct:  103 ARRQLAIGINEVTKALERNELKLLLVCKSVRPKHMTDHLIALSATRGVPACQVPRLSQSLSVPLGLKSVLALGFR 177          
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|1025296872|ref|XP_016380152.1| (PREDICTED: ribonuclease P protein subunit p38-like [Sinocyclocheilus rhinocerous])

HSP 1 Score: 83.5741 bits (205), Expect = 4.412e-15
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 0
Query:  177 ARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGF-RGGELM 256
             R+ + IGINEVT+ LER+ELSL+L+C  VRPA +  H+  L+  R VP   +P  + +L   LGLKC+ ALGF RG E+ 
Sbjct:  109 VRKQLAIGINEVTKGLERNELSLVLVCNSVRPAHMTCHLIPLSKTRSVPACQVPSLSESLAGLLGLKCVLALGFKRGAEVF 189          
The following BLAST results are available for this feature:
BLAST of EWM22691.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103257|gb|EWM22691.1|0.000e+0100.00Ribosomal protein L7Ae/L8/Nhp2 family [Nannochloro... [more]
gi|410905399|ref|XP_003966179.1|2.250e-1649.33PREDICTED: ribonuclease P protein subunit p38 [Tak... [more]
gi|657789069|ref|XP_008321293.1|6.918e-1649.33PREDICTED: ribonuclease P protein subunit p38 [Cyn... [more]
gi|27656760|gb|AAO20904.1|9.095e-1649.33RNase P38 [Takifugu rubripes][more]
gi|49904624|gb|AAH76374.1|9.131e-1650.00Ribonuclease P/MRP 38 subunit [Danio rerio] >gi|18... [more]
gi|315113850|ref|NP_001002525.2|1.116e-1550.00ribonuclease P protein subunit p38 [Danio rerio][more]
gi|1020478571|ref|XP_016144660.1|1.308e-1550.62PREDICTED: ribonuclease P protein subunit p38 [Sin... [more]
gi|1101575040|ref|XP_018953209.1|1.504e-1543.62PREDICTED: LOW QUALITY PROTEIN: ribonuclease P pro... [more]
gi|1168909980|ref|XP_020497626.1|2.368e-1550.67ribonuclease P protein subunit p38 [Labrus bergylt... [more]
gi|1025296872|ref|XP_016380152.1|4.412e-1549.38PREDICTED: ribonuclease P protein subunit p38-like... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8014rna8014Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications