EWM22691.1, cds7992 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|585103257|gb|EWM22691.1| (Ribosomal protein L7Ae/L8/Nhp2 family [Nannochloropsis gaditana]) HSP 1 Score: 625.935 bits (1613), Expect = 0.000e+0 Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0
Query: 1 MVRPGVAHESKQSQKRPFFHSGVVSPLSARAATAFGSPDETSATAPASASHPQHGAQEEEEQLPQQKHRHKSHVDERKKSKKEDLAVGINAWITMPSTERDIFVDRCRKEIAPLLGAIPPAGTLRGEEEAHTDDIGRRGRCAPMHGITGGDRTRKKAKLRVQKVFSYRDGTAQHKFARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFRGGELMRRLKKGENDTDGSDNDAERVVMDDVRSRLQSFLDFLLTKQDYMNAVRID 305
MVRPGVAHESKQSQKRPFFHSGVVSPLSARAATAFGSPDETSATAPASASHPQHGAQEEEEQLPQQKHRHKSHVDERKKSKKEDLAVGINAWITMPSTERDIFVDRCRKEIAPLLGAIPPAGTLRGEEEAHTDDIGRRGRCAPMHGITGGDRTRKKAKLRVQKVFSYRDGTAQHKFARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFRGGELMRRLKKGENDTDGSDNDAERVVMDDVRSRLQSFLDFLLTKQDYMNAVRID
Sbjct: 1 MVRPGVAHESKQSQKRPFFHSGVVSPLSARAATAFGSPDETSATAPASASHPQHGAQEEEEQLPQQKHRHKSHVDERKKSKKEDLAVGINAWITMPSTERDIFVDRCRKEIAPLLGAIPPAGTLRGEEEAHTDDIGRRGRCAPMHGITGGDRTRKKAKLRVQKVFSYRDGTAQHKFARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFRGGELMRRLKKGENDTDGSDNDAERVVMDDVRSRLQSFLDFLLTKQDYMNAVRID 305
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|410905399|ref|XP_003966179.1| (PREDICTED: ribonuclease P protein subunit p38 [Takifugu rubripes] >gi|768921950|ref|XP_011603943.1| PREDICTED: ribonuclease P protein subunit p38 [Takifugu rubripes]) HSP 1 Score: 87.0409 bits (214), Expect = 2.250e-16 Identity = 37/75 (49.33%), Postives = 56/75 (74.67%), Query Frame = 0
Query: 177 ARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFR 251
AR+ + IGINEVT+ALER+EL L+L+C+ V+P ++EH+ L+ RDVP +P+ + ++ + LGLK + ALGFR
Sbjct: 102 ARRKLAIGINEVTKALERNELKLLLVCKSVKPQHMMEHLITLSTTRDVPACQVPRLSQSVSEPLGLKSVLALGFR 176
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|657789069|ref|XP_008321293.1| (PREDICTED: ribonuclease P protein subunit p38 [Cynoglossus semilaevis]) HSP 1 Score: 85.8853 bits (211), Expect = 6.918e-16 Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 0
Query: 177 ARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFR 251
AR+ + IGINEVT+ALER+E+SL+L+C+ V+P + H+ L A R VP +P+ +S++ Q LGLK + A+GFR
Sbjct: 99 ARRQLAIGINEVTKALERNEISLVLVCKSVKPQHMTNHLITLCATRGVPACQVPRLSSSVSQPLGLKSVLAIGFR 173
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|27656760|gb|AAO20904.1| (RNase P38 [Takifugu rubripes]) HSP 1 Score: 85.5001 bits (210), Expect = 9.095e-16 Identity = 37/75 (49.33%), Postives = 56/75 (74.67%), Query Frame = 0
Query: 177 ARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFR 251
AR+ + IGINEVT+ALER+EL L+L+C+ V+P ++EH+ L+ RDVP +P+ + ++ + LGLK + ALGFR
Sbjct: 102 ARRKLAIGINEVTKALERNELKLLLVCKCVKPQHMMEHLITLSTTRDVPACQVPRLSQSVSEPLGLKSVLALGFR 176
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|49904624|gb|AAH76374.1| (Ribonuclease P/MRP 38 subunit [Danio rerio] >gi|182891480|gb|AAI64604.1| Rpp38 protein [Danio rerio]) HSP 1 Score: 85.5001 bits (210), Expect = 9.131e-16 Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 0
Query: 178 RQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFRGG 253
R+ + IGINEVT+ LER+ELSL+L+C V PA + H+ L+ R VP +P + +L + LGLKC+ ALGFR G
Sbjct: 107 RKQLAIGINEVTKGLERNELSLVLVCNSVTPAHMTSHLIPLSKTRSVPACQVPGLSGSLSELLGLKCVLALGFRRG 182
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|315113850|ref|NP_001002525.2| (ribonuclease P protein subunit p38 [Danio rerio]) HSP 1 Score: 85.1149 bits (209), Expect = 1.116e-15 Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 0
Query: 178 RQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFRGG 253
R+ + IGINEVT+ LER+ELSL+L+C V PA + H+ L+ R VP +P + +L + LGLKC+ ALGFR G
Sbjct: 107 RKQLAIGINEVTKGLERNELSLVLVCNSVTPAHMTSHLIPLSKTRSVPACQVPGLSGSLSELLGLKCVLALGFRRG 182
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|1020478571|ref|XP_016144660.1| (PREDICTED: ribonuclease P protein subunit p38 [Sinocyclocheilus grahami] >gi|1020478573|ref|XP_016144661.1| PREDICTED: ribonuclease P protein subunit p38 [Sinocyclocheilus grahami]) HSP 1 Score: 85.1149 bits (209), Expect = 1.308e-15 Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 0
Query: 177 ARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGF-RGGELM 256
AR+ + IGINEVT+ LER+ELSL+L+C VRPA + H+ L+ R VP +P + +L LGLKC+ ALGF RG E+
Sbjct: 109 ARKQLAIGINEVTKGLERNELSLVLVCNSVRPAHMTCHLIPLSKTRSVPACQVPSLSESLAGLLGLKCVLALGFKRGAEVF 189
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|1101575040|ref|XP_018953209.1| (PREDICTED: LOW QUALITY PROTEIN: ribonuclease P protein subunit p38-like [Cyprinus carpio]) HSP 1 Score: 85.1149 bits (209), Expect = 1.504e-15 Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 0
Query: 160 RVQKVFSYRDGTAQHKFARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFRGG 253
RVQ + + R+ + +GINEVT+ LER+ELSL+L+C VRPA + H+ L+ R VP +P + +L LGLKC+ ALGFR G
Sbjct: 94 RVQTPSKPTEPCWTNPAVRKQLAVGINEVTKGLERNELSLVLVCNSVRPAHMTCHLIPLSKTRSVPACQVPSLSESLAGLLGLKCVLALGFRRG 187
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|1168909980|ref|XP_020497626.1| (ribonuclease P protein subunit p38 [Labrus bergylta] >gi|1168909982|ref|XP_020497627.1| ribonuclease P protein subunit p38 [Labrus bergylta]) HSP 1 Score: 84.3445 bits (207), Expect = 2.368e-15 Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 0
Query: 177 ARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGFR 251
AR+ + IGINEVT+ALER+EL L+L+C+ VRP + +H+ L+A R VP +P+ + +L LGLK + ALGFR
Sbjct: 103 ARRQLAIGINEVTKALERNELKLLLVCKSVRPKHMTDHLIALSATRGVPACQVPRLSQSLSVPLGLKSVLALGFR 177
BLAST of EWM22691.1 vs. NCBI_GenBank
Match: gi|1025296872|ref|XP_016380152.1| (PREDICTED: ribonuclease P protein subunit p38-like [Sinocyclocheilus rhinocerous]) HSP 1 Score: 83.5741 bits (205), Expect = 4.412e-15 Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 0
Query: 177 ARQCICIGINEVTRALERDELSLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGF-RGGELM 256
R+ + IGINEVT+ LER+ELSL+L+C VRPA + H+ L+ R VP +P + +L LGLKC+ ALGF RG E+
Sbjct: 109 VRKQLAIGINEVTKGLERNELSLVLVCNSVRPAHMTCHLIPLSKTRSVPACQVPSLSESLAGLLGLKCVLALGFKRGAEVF 189 The following BLAST results are available for this feature:
BLAST of EWM22691.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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