EWM22700.1, cds7971 (CDS) Nannochloropsis gaditana

Overview
NameEWM22700.1
Unique Namecds7971
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:305706..305720 +
Alignment locationKK037247.1:305885..305995 +
Alignment locationKK037247.1:306116..306313 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22700.1
Productatp-binding cassette sub-family b member 5
Orig transcript idgnl|cribi|Naga_100566g2.6424.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:305706..305720 +
KK037247.1supercontigKK037247.1:305885..305995 +
KK037247.1supercontigKK037247.1:306116..306313 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0016043cellular component organization
GO:0009056catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
GO:0005856cytoskeleton
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM22700.1 vs. NCBI_GenBank
Match: gi|585103269|gb|EWM22700.1| (atp-binding cassette sub-family b member 5 [Nannochloropsis gaditana])

HSP 1 Score: 214.157 bits (544), Expect = 2.107e-70
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVYAAFRAQQTFMQPPKDVEPRRAQAVKEPERI 107
            MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVYAAFRAQQTFMQPPKDVEPRRAQAVKEPERI
Sbjct:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVYAAFRAQQTFMQPPKDVEPRRAQAVKEPERI 107          
BLAST of EWM22700.1 vs. NCBI_GenBank
Match: gi|732746541|gb|KHJ76845.1| (hypothetical protein OESDEN_23535, partial [Oesophagostomum dentatum])

HSP 1 Score: 111.694 bits (278), Expect = 1.130e-29
Identity = 52/97 (53.61%), Postives = 73/97 (75.26%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVYAAFRAQQTFMQPPKDVEPRR 97
            +R P++LLLDE +SALD  S+++VQAAL++A+ GRTT+IIAHRLSTI++ D II +K+G VVE GTH ELL K+G+Y      QTF     +V+ ++
Sbjct:   23 VRDPKILLLDEATSALDAESESVVQAALDKASIGRTTIIIAHRLSTIKNADKIIAMKAGEVVEFGTHGELLEKKGLYYDLVNAQTFTDAVDNVDGKK 119          
BLAST of EWM22700.1 vs. NCBI_GenBank
Match: gi|732891320|gb|KHJ94299.1| (ABC transporter, ATP-binding protein [Oesophagostomum dentatum])

HSP 1 Score: 114.775 bits (286), Expect = 2.440e-29
Identity = 55/105 (52.38%), Postives = 77/105 (73.33%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVYAAFRAQQTFMQPPKDVEPRRAQAVKEPE 105
            +R P++LLLDE +SALD  S+++VQAAL++A+ GRTT+IIAHRLSTI++ D II +K+G VVE GTH ELL K+G+Y      QTF     +V+  +A+ VK+  
Sbjct:   41 VRDPKILLLDEATSALDAESESVVQAALDKASVGRTTIIIAHRLSTIKNADKIIAMKAGEVVEFGTHDELLEKKGLYYDLVNAQTFTDAVDNVDEIKAEGVKKTN 145          
BLAST of EWM22700.1 vs. NCBI_GenBank
Match: gi|928153077|ref|XP_013974355.1| (PREDICTED: LOW QUALITY PROTEIN: ATP-binding cassette sub-family B member 5 [Canis lupus familiaris])

HSP 1 Score: 114.005 bits (284), Expect = 3.401e-27
Identity = 51/94 (54.26%), Postives = 75/94 (79.79%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVYAAFRAQQTFMQPPKDVE 94
            +RKP++L+LDE +SALD  S+++VQAALE+A++GRTT++IAHRLSTI+S D I+ +K G VVE+GTHAEL+AK+G+Y +    Q   +  + +E
Sbjct:   95 VRKPKILILDEATSALDTESESVVQAALEKASKGRTTIVIAHRLSTIQSADLIVTIKDGMVVEKGTHAELMAKQGLYYSLAMTQDIKKADEQIE 188          

HSP 2 Score: 92.4337 bits (228), Expect = 1.076e-19
Identity = 41/77 (53.25%), Postives = 60/77 (77.92%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVY 77
            +RKP++LLLDE +SALD  S+ +VQ AL++A +G+T L++AHRLSTI++ D I+VL +G + E+GTH ELL    +Y
Sbjct:  726 LRKPKILLLDEATSALDNESEKVVQHALDKARKGKTCLVVAHRLSTIQNADLIVVLHNGKIKEQGTHQELLRNRDMY 802          
BLAST of EWM22700.1 vs. NCBI_GenBank
Match: gi|507646025|ref|XP_004702768.1| (PREDICTED: ATP-binding cassette sub-family B member 5 [Echinops telfairi])

HSP 1 Score: 112.464 bits (280), Expect = 1.054e-26
Identity = 49/95 (51.58%), Postives = 75/95 (78.95%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVYAAFRAQQTFMQPPKDVEP 95
            +R P++L+LDE +SALD  S+++VQAALE+A++GRTT+++AHRLST+ + D I+ +K G VVE+GTHA+L+AKEG+Y +    Q   +  +D+EP
Sbjct:  540 VRNPKILILDEATSALDTESESVVQAALEKASKGRTTIVVAHRLSTVRNADLIVAMKDGRVVEKGTHADLMAKEGLYYSLAMSQDIKKVDEDMEP 634          

HSP 2 Score: 88.9669 bits (219), Expect = 2.093e-18
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVY 77
            +RKP++LLLDE +SALD   +  VQ ALE A  GRT L++AHRLSTI++ D I+VL  G V E+GTH ELL    +Y
Sbjct: 1175 LRKPKILLLDEATSALDNECEKAVQQALEEARRGRTCLMVAHRLSTIQNADLIVVLHDGKVKEQGTHQELLRNRDIY 1251          
BLAST of EWM22700.1 vs. NCBI_GenBank
Match: gi|1072244907|ref|XP_018431832.1| (PREDICTED: ATP-binding cassette sub-family B member 5 isoform X1 [Nanorana parkeri])

HSP 1 Score: 111.694 bits (278), Expect = 1.979e-26
Identity = 54/103 (52.43%), Postives = 75/103 (72.82%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVYAAFRAQQTFMQPPKDVEPRRAQAVKE 103
            +R P++LLLDE +SALD  S+A+VQAAL++A+EGRTT++IAHRLST+ + D I+VL++GAV E GTH+EL+AK+G+Y +    Q        VE   AQ   E
Sbjct:  512 VRNPKILLLDEATSALDMQSEAVVQAALDKASEGRTTIVIAHRLSTVWTADLIVVLENGAVAENGTHSELMAKKGIYYSLATAQAIQTT---VESETAQGTLE 611          

HSP 2 Score: 93.2041 bits (230), Expect = 5.741e-20
Identity = 42/85 (49.41%), Postives = 63/85 (74.12%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVYAAFRAQQT 85
            +R P++LLLDE +SALD  S+ +VQ AL++A +GRT ++IAHRLST+++ D I+V+K+G ++E GTH +LL+  G Y      QT
Sbjct: 1146 IRAPKLLLLDEATSALDNESEKVVQQALDQARKGRTCIMIAHRLSTVQNADLIVVMKNGRIIEYGTHQQLLSNRGAYYDLVHAQT 1230          
BLAST of EWM22700.1 vs. NCBI_GenBank
Match: gi|759096592|ref|XP_011362782.1| (PREDICTED: ATP-binding cassette sub-family B member 5 [Pteropus vampyrus])

HSP 1 Score: 110.923 bits (276), Expect = 4.177e-26
Identity = 49/85 (57.65%), Postives = 70/85 (82.35%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVYAAFRAQQT 85
            +R P++L+LDE +SALD  S+++VQAALE+A++GRTT+++AHRLSTI S D I+ +K G VVE+GTHAEL+AK+G+Y +    QT
Sbjct:  541 VRNPKILILDEATSALDTESESVVQAALEKASKGRTTIVVAHRLSTIRSADLIVTIKDGVVVEKGTHAELMAKQGLYYSLAMSQT 625          

HSP 2 Score: 90.5077 bits (223), Expect = 5.628e-19
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVY 77
            +RKP++LLLDE +SALD  S+ +VQ AL  A +GRT L++AHRLSTI++ D I+VL +G + E GTH ELL    VY
Sbjct: 1125 LRKPKILLLDEATSALDNESEKVVQHALNTARKGRTCLVVAHRLSTIQNADLIVVLHNGKIKEWGTHQELLRNRNVY 1201          
BLAST of EWM22700.1 vs. NCBI_GenBank
Match: gi|1062906589|ref|XP_017950082.1| (PREDICTED: ATP-binding cassette sub-family B member 5 isoform X7 [Xenopus tropicalis])

HSP 1 Score: 110.538 bits (275), Expect = 5.868e-26
Identity = 50/104 (48.08%), Postives = 77/104 (74.04%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVYAAFRAQQTF-MQPPKDVEPRRAQAVKE 103
            +R P++LLLDE +SALD  S+AIVQAAL++A++GRTT+++AHRLSTI + D+I+V ++GAV E+GTH+EL+ K G+Y +    QT  +   K++   +   + E
Sbjct:  488 VRNPKILLLDEATSALDTGSEAIVQAALDKASKGRTTIVVAHRLSTIWTADAIVVFENGAVAEQGTHSELMEKRGIYFSLATAQTVQLSEDKEITETKQNGIHE 591          

HSP 2 Score: 93.2041 bits (230), Expect = 6.322e-20
Identity = 39/77 (50.65%), Postives = 59/77 (76.62%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVY 77
            +R P++LLLDE +SALD  S+ +VQ AL++A +GRT ++IAHRL+T+++ D I+V+  G ++E G+H ELL K G Y
Sbjct: 1124 IRAPKILLLDEATSALDNESEKVVQQALDQARKGRTCILIAHRLTTVQNADIIVVMNKGKIIEHGSHQELLGKHGAY 1200          
BLAST of EWM22700.1 vs. NCBI_GenBank
Match: gi|301607480|ref|XP_002933334.1| (PREDICTED: ATP-binding cassette sub-family B member 5 isoform X1 [Xenopus tropicalis] >gi|1043418516|gb|OCA31147.1| hypothetical protein XENTR_v90016034mg [Xenopus tropicalis])

HSP 1 Score: 110.538 bits (275), Expect = 6.052e-26
Identity = 50/104 (48.08%), Postives = 77/104 (74.04%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVYAAFRAQQTF-MQPPKDVEPRRAQAVKE 103
            +R P++LLLDE +SALD  S+AIVQAAL++A++GRTT+++AHRLSTI + D+I+V ++GAV E+GTH+EL+ K G+Y +    QT  +   K++   +   + E
Sbjct:  543 VRNPKILLLDEATSALDTGSEAIVQAALDKASKGRTTIVVAHRLSTIWTADAIVVFENGAVAEQGTHSELMEKRGIYFSLATAQTVQLSEDKEITETKQNGIHE 646          

HSP 2 Score: 93.2041 bits (230), Expect = 6.459e-20
Identity = 39/77 (50.65%), Postives = 59/77 (76.62%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVY 77
            +R P++LLLDE +SALD  S+ +VQ AL++A +GRT ++IAHRL+T+++ D I+V+  G ++E G+H ELL K G Y
Sbjct: 1179 IRAPKILLLDEATSALDNESEKVVQQALDQARKGRTCILIAHRLTTVQNADIIVVMNKGKIIEHGSHQELLGKHGAY 1255          
BLAST of EWM22700.1 vs. NCBI_GenBank
Match: gi|1191910860|ref|XP_020919086.1| (ATP-binding cassette sub-family B member 5 isoform X8 [Sus scrofa])

HSP 1 Score: 110.153 bits (274), Expect = 7.910e-26
Identity = 51/94 (54.26%), Postives = 72/94 (76.60%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVYAAFRAQQTFMQPPKDVE 94
            +R P++L+LDE +SALD  S+++VQAALE+A++GRTT++IAHRLSTI S D I+ LK G VVE+GTHAEL+AK+G Y +    Q   +  + +E
Sbjct:  431 IRNPKILILDEATSALDTESESVVQAALEKASKGRTTIVIAHRLSTIRSADMIVTLKDGMVVEKGTHAELMAKQGPYYSLAISQDIKKADEQME 524          

HSP 2 Score: 95.9005 bits (237), Expect = 8.279e-21
Identity = 42/77 (54.55%), Postives = 61/77 (79.22%), Query Frame = 0
Query:    1 MRKPEVLLLDEPSSALDQSSQAIVQAALERAAEGRTTLIIAHRLSTIESCDSIIVLKSGAVVERGTHAELLAKEGVY 77
            +RKP++LLLDE +SALD  S+ +VQ AL++A++GRT L++AHRLSTI++ D I+VL +G + E+GTH ELL    +Y
Sbjct: 1061 LRKPKILLLDEATSALDNESEKVVQHALDKASKGRTCLMVAHRLSTIQNADLIVVLHNGKIKEQGTHQELLKNRDIY 1137          
The following BLAST results are available for this feature:
BLAST of EWM22700.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103269|gb|EWM22700.1|2.107e-70100.00atp-binding cassette sub-family b member 5 [Nannoc... [more]
gi|732746541|gb|KHJ76845.1|1.130e-2953.61hypothetical protein OESDEN_23535, partial [Oesoph... [more]
gi|732891320|gb|KHJ94299.1|2.440e-2952.38ABC transporter, ATP-binding protein [Oesophagosto... [more]
gi|928153077|ref|XP_013974355.1|3.401e-2754.26PREDICTED: LOW QUALITY PROTEIN: ATP-binding casset... [more]
gi|507646025|ref|XP_004702768.1|1.054e-2651.58PREDICTED: ATP-binding cassette sub-family B membe... [more]
gi|1072244907|ref|XP_018431832.1|1.979e-2652.43PREDICTED: ATP-binding cassette sub-family B membe... [more]
gi|759096592|ref|XP_011362782.1|4.177e-2657.65PREDICTED: ATP-binding cassette sub-family B membe... [more]
gi|1062906589|ref|XP_017950082.1|5.868e-2648.08PREDICTED: ATP-binding cassette sub-family B membe... [more]
gi|301607480|ref|XP_002933334.1|6.052e-2648.08PREDICTED: ATP-binding cassette sub-family B membe... [more]
gi|1191910860|ref|XP_020919086.1|7.910e-2654.26ATP-binding cassette sub-family B member 5 isoform... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7993rna7993Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications