EWM22715.1, cds7955 (CDS) Nannochloropsis gaditana

Overview
NameEWM22715.1
Unique Namecds7955
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:273101..273213 -
Alignment locationKK037247.1:272808..272882 -
Alignment locationKK037247.1:272613..272680 -
Alignment locationKK037247.1:272166..272383 -
Alignment locationKK037247.1:271789..272041 -
Alignment locationKK037247.1:271487..271600 -
Alignment locationKK037247.1:271233..271375 -
Alignment locationKK037247.1:270902..271099 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22715.1
Productdehydrogenase reductase sdr family member 9
Orig transcript idgnl|cribi|Naga_100641g4.3002.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:273101..273213 -
KK037247.1supercontigKK037247.1:272808..272882 -
KK037247.1supercontigKK037247.1:272613..272680 -
KK037247.1supercontigKK037247.1:272166..272383 -
KK037247.1supercontigKK037247.1:271789..272041 -
KK037247.1supercontigKK037247.1:271487..271600 -
KK037247.1supercontigKK037247.1:271233..271375 -
KK037247.1supercontigKK037247.1:270902..271099 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR002198DH_sc/Rdtase_SDR
IPR016040NAD(P)-bd_dom
Homology
BLAST of EWM22715.1 vs. NCBI_GenBank
Match: gi|585103293|gb|EWM22715.1| (dehydrogenase reductase sdr family member 9 [Nannochloropsis gaditana])

HSP 1 Score: 810.446 bits (2092), Expect = 0.000e+0
Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0
Query:    1 MTRPLAFLVIVVVVEYNVVCCLTPNIIPYRCQRKKKNVCKEVRSACRLFNTEKSVVRLRCPTSPTGTSTRSDMNGDRQVTNVEKRASFSSFLLQLPNILLQATNNVLHLPILFDLAWYVVWAFYIAMAPFYLLCHILFFVLDTLFAIYSFARQKVKSLILFMKGKKGEAREERAILITGCDSGFGFDLAMALAAESLACREEEKKEGRREEPRGRRWKVYAGCLSATGREQITQRAPEAAAHGILVPLSLDVTQASEVATAVDRVRAECRGELFALVNNAGIGVAGLVDWVPMEHFRKIMEVNYFGMIAVSKACLPLLKKRASRACDAPPRIVLVTSFAGLVPGQLSMGAYCASKHAAEAFGYGRGGGQERGREGTRQGGSRGRDEHALHATR 393
            MTRPLAFLVIVVVVEYNVVCCLTPNIIPYRCQRKKKNVCKEVRSACRLFNTEKSVVRLRCPTSPTGTSTRSDMNGDRQVTNVEKRASFSSFLLQLPNILLQATNNVLHLPILFDLAWYVVWAFYIAMAPFYLLCHILFFVLDTLFAIYSFARQKVKSLILFMKGKKGEAREERAILITGCDSGFGFDLAMALAAESLACREEEKKEGRREEPRGRRWKVYAGCLSATGREQITQRAPEAAAHGILVPLSLDVTQASEVATAVDRVRAECRGELFALVNNAGIGVAGLVDWVPMEHFRKIMEVNYFGMIAVSKACLPLLKKRASRACDAPPRIVLVTSFAGLVPGQLSMGAYCASKHAAEAFGYGRGGGQERGREGTRQGGSRGRDEHALHATR
Sbjct:    1 MTRPLAFLVIVVVVEYNVVCCLTPNIIPYRCQRKKKNVCKEVRSACRLFNTEKSVVRLRCPTSPTGTSTRSDMNGDRQVTNVEKRASFSSFLLQLPNILLQATNNVLHLPILFDLAWYVVWAFYIAMAPFYLLCHILFFVLDTLFAIYSFARQKVKSLILFMKGKKGEAREERAILITGCDSGFGFDLAMALAAESLACREEEKKEGRREEPRGRRWKVYAGCLSATGREQITQRAPEAAAHGILVPLSLDVTQASEVATAVDRVRAECRGELFALVNNAGIGVAGLVDWVPMEHFRKIMEVNYFGMIAVSKACLPLLKKRASRACDAPPRIVLVTSFAGLVPGQLSMGAYCASKHAAEAFGYGRGGGQERGREGTRQGGSRGRDEHALHATR 393          
BLAST of EWM22715.1 vs. NCBI_GenBank
Match: gi|553193850|ref|XP_005855844.1| (17-beta-hydroxysteroid dehydrogenase type 6, partial [Nannochloropsis gaditana CCMP526] >gi|422293217|gb|EKU20517.1| 17-beta-hydroxysteroid dehydrogenase type 6, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 348.206 bits (892), Expect = 1.192e-117
Identity = 167/170 (98.24%), Postives = 168/170 (98.82%), Query Frame = 0
Query:   73 MNGDRQVTNVEKRASFSSFLLQLPNILLQATNNVLHLPILFDLAWYVVWAFYIAMAPFYLLCHILFFVLDTLFAIYSFARQKVKSLILFMKGKKGEAREERAILITGCDSGFGFDLAMALAAESLACREEEKKEGRREEPRGRRWKVYAGCLSATGREQITQRAPEAAAH 242
            MNGDRQVTNVEKRASFSS LLQLPNILLQATNNVLHLPILFDLAWYVVWAFYIAMAPFYLLCHILFFVLDTLFAIYSFARQ+VKSLILFMKGK GEAREERAILITGCDSGFGFDLAMALAAESLACREEEKKEGRREEPRGRRWKVYAGCLSATGREQITQRAPEAAAH
Sbjct:    1 MNGDRQVTNVEKRASFSSLLLQLPNILLQATNNVLHLPILFDLAWYVVWAFYIAMAPFYLLCHILFFVLDTLFAIYSFARQEVKSLILFMKGKNGEAREERAILITGCDSGFGFDLAMALAAESLACREEEKKEGRREEPRGRRWKVYAGCLSATGREQITQRAPEAAAH 170          
BLAST of EWM22715.1 vs. NCBI_GenBank
Match: gi|585106696|gb|EWM25060.1| (serine threonine-protein kinase dclk3 [Nannochloropsis gaditana])

HSP 1 Score: 177.948 bits (450), Expect = 2.679e-45
Identity = 103/264 (39.02%), Postives = 150/264 (56.82%), Query Frame = 0
Query:   99 LLQATNNVLHLPILFDLAWYVVWAFYIAMAPFYLLCHILFFVLDTLFAIYSFARQKVKSLILFMKGKKGEAREERAILITGCDSGFGFDLAMALAAESLACREEEKKEGRREEPRGRRWKVYAGCLSATGREQITQRAPEAAAHGILVPLSLDVTQASEVATAVDRVRAECRGELFALVNNAGIGVAGLVDWVPMEHFRKIMEVNYFGMIAVSKACLPLLKKRASRACDAPPRIVLVTSFAGLVPGQLSMGAYCASKHAAEAFG 362
            +L   N+++HLPI+ D+AW++     + + P + L  ++ F++  L            +L+  ++  KG     RA+LITGCD+GFG+DLA+AL            K+G         W+VYAGCL+     ++  +A  A + G +V + +DVT+ +++   V+++  E   +LFA+V NAG+G  GLVDW P+  +R IMEVN F MIA  KACLPLLK+          RIV VTS AG+  G   M AY ASKHAAEAF 
Sbjct: 1210 MLNLMNDIMHLPIVDDIAWHLYHFVRLLLGPLWALGLLISFLVKLLSG----------ALVTRLEQPKG-----RAVLITGCDTGFGYDLAIALV-----------KKG---------WRVYAGCLTQAAVAELKTKA--AGSAGSMVSVLMDVTKQADIDRVVEQIAKESPKQLFAVVCNAGVGRGGLVDWTPLATYRAIMEVNLFAMIATCKACLPLLKESKG-------RIVNVTSMAGIFLGAPCMSAYAASKHAAEAFS 1429          
BLAST of EWM22715.1 vs. NCBI_GenBank
Match: gi|585108719|gb|EWM26631.1| (NAD(P)-binding domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 133.65 bits (335), Expect = 2.839e-31
Identity = 89/264 (33.71%), Postives = 124/264 (46.97%), Query Frame = 0
Query:   99 LLQATNNVLHLPILFDLAWYVVWAFYIAMAPFYLLCHILFFVLDTLFAIYSFARQKVKSLILFMKGKKGEAREERAILITGCDSGFGFDLAMALAAESLACREEEKKEGRREEPRGRRWKVYAGCLSATGREQITQRAPEAAAHGILVPLSLDVTQASEVATAVDRVRAECRGE-LFALVNNAGIGVAGLVDWVPMEHFRKIMEVNYFGMIAVSKACLPLLKKRASRACDAPPRIVLVTSFAGLVPGQLSMGAYCASKHAAEAF 361
            LL   N+ L    + D A+Y  W  +    P+ +L  I+F  L                        KG  +    +LITGCDSGFG  LA+AL+                       W VYA C++  G           A +G +  L +DVT+  +V   + +V A    E L+ALVNNAG+   G  DW  +EH+R  ME+N+FG + + K  LPLLK+ A        RI+ +TSF+GL+PG     AY ASKHAAE++
Sbjct:   52 LLSQLNSFLSADYVSDWAYYGFWFVFWLFMPYVVLGGIVFMALYDAVTC------------------KGNRKPVGPVLITGCDSGFGRGLALALSELG--------------------WNVYATCMTTDGVHYF-------AKNGKVTALIMDVTKEEDVRAVMAKVDAAHPKEGLYALVNNAGVDRFGTTDWCDVEHYRWHMEINFFGHVRMVKEALPLLKRAARHNDYHSSRILNITSFSGLLPGLFMKSAYGASKHAAESW 270          
BLAST of EWM22715.1 vs. NCBI_GenBank
Match: gi|585111089|gb|EWM28666.1| (retinol retinaldehyde reductase [Nannochloropsis gaditana])

HSP 1 Score: 127.872 bits (320), Expect = 8.536e-30
Identity = 91/265 (34.34%), Postives = 135/265 (50.94%), Query Frame = 0
Query:   99 LLQATNNVLHLPILFDLAWY--VVWAFYIAMAPFYLLCHILFFVLDTLFAIYSFARQKVKSLILFMKGKKGEAREERAILITGCDSGFGFDLAMALAAESLACREEEKKEGRREEPRGRRWKVYAGCLSATGREQITQRAPEAAAHGILVPLSLDVTQASEVATAVDRVRAECRGELFALVNNAGIGVAGLVDWVPMEHFRKIMEVNYFGMIAVSKACLPLLKKRASRACDAPPRIVLVTSFAGLVPGQLSMGAYCASKHAAEAF 361
            L+   NNV H+P+  D+ +Y    WA++    P  LL  ++F    T    +S         I ++     E  E++ ++ITGCD+GFG  LA+ L            K+G         +KVYA CL+    +++ +          L  + LDVT+  +VA+   R+ A     +FALVNNAG+  AGL+DW+ M  FR  MEVNYF +++V+KA LP LKK          RI++++S AG+  G     AY +SKHA E F
Sbjct:    3 LINWANNVAHIPVFEDMCYYNFFFWAWF--WGP--LLGALVFLHDATTGFFFS---------IFYV-----EPSEDKVVVITGCDTGFGKSLALDLG-----------KKG---------FKVYASCLTQRSADELKKECDA------LQTIILDVTKEDQVASVAARISAAHPQGIFALVNNAGVSRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKG-------RIIMMSSAAGVACGYPVTCAYSSSKHALELF 216          
BLAST of EWM22715.1 vs. NCBI_GenBank
Match: gi|585108794|gb|EWM26706.1| (retinol dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 125.561 bits (314), Expect = 8.047e-29
Identity = 96/265 (36.23%), Postives = 121/265 (45.66%), Query Frame = 0
Query:   99 LLQATNNVLHLPI-LFDLAWYVVWAFYIAMAPFYLLCHILFFVLDTLFAIYSFARQKVKSLILFMKGKKGEAREERAILITGCDSGFGFDLAMALAAESLACREEEKKEGRREEPRGRRWKVYAGCLSATGREQITQRAPEAAAHGILVPLSLDVTQASEVATAVDRVRAECRGE-LFALVNNAGIGVAGLVDWVPMEHFRKIMEVNYFGMIAVSKACLPLLKKRASRACDAPPRIVLVTSFAGLVPGQLSMGAYCASKHAAEAF 361
            LL   NN LH  I ++ + +Y+ W  +    P      +L F L  LF                    KG  +    +LITGC SGFG DL MALAA+                     WKVYA C+            P          L LDVT   +V  A   V  E   E L+ALVNNAG    G  DW  +++F+  M+VNY+G I V+KA LPLL KR  R   A  RI+ + S +GL+PG    G Y ASKHAAEA+
Sbjct:   28 LLSRLNNFLHSNIYVYIITYYLYWLGFWLFIPVVAFFTMLGFGLYDLFT------------------AKGFRKPCGPVLITGCSSGFGLDLTMALAAQG--------------------WKVYA-CVRREADMAPFSNNPNVKG------LILDVTNEEQVRAAFATVDGENPEEGLYALVNNAGFEHYGTTDWCSLDYFKVHMDVNYYGPIRVTKAALPLL-KRYGRGGSAAARIININSTSGLLPGLPLKGGYSASKHAAEAW 246          
BLAST of EWM22715.1 vs. NCBI_GenBank
Match: gi|585108707|gb|EWM26619.1| (retinol retinaldehyde reductase [Nannochloropsis gaditana])

HSP 1 Score: 121.709 bits (304), Expect = 2.540e-27
Identity = 85/267 (31.84%), Postives = 131/267 (49.06%), Query Frame = 0
Query:   99 LLQATNNVLHLPILFDLAWYVVW-AFYIAMAPFYLLCHILFFVLDTLFAIYSFARQKVKSLILFMKGKKGEAREERAILITGCDSGFGFDLAMALAAESLACREEEKKEGRREEPRGRRWKVYAGCLSATGREQITQRAPEAAAHGILVPLSLDVTQASEVATAVDRVRAECRGELFALVNNAG---IGVAGLVDWVPMEHFRKIMEVNYFGMIAVSKACLPLLKKRASRACDAPPRIVLVTSFAGLVPGQLSMGAYCASKHAAEAF 361
            ++   N+ +H   + D+ +Y  W  F++ M P  LL  +L  V D + A                   +G  +    +L+TGCD+GFG  LA+ALA                     R WKV A C + TG +  + R P   +  I  P+ LD++   E+    + + A+    L+ALVNN     +G  GLV+W+ +++++  MEVN +  I  +KA LPLLKK   +A    PRIV + S AG+VPGQ +   Y  +KHA +A+
Sbjct:   28 IISKLNDFVHRDYITDIVFYGFWLGFWVFMPPVILLGTLLLAVYDLITA-------------------RGYRQPCGPVLVTGCDTGFGKALALALAE--------------------RHWKVIAACSTDTGVK--SYREPANGSMNI-DPIKLDLSNDDEIQACAELLAAQYPEGLYALVNNNNNTVVGKDGLVEWMTIDNYKMHMEVNLYAFIRATKAFLPLLKKYTRQASRCKPRIVTLNSNAGIVPGQPNASCYAVAKHACDAW 252          
BLAST of EWM22715.1 vs. NCBI_GenBank
Match: gi|585111118|gb|EWM28695.1| (retinol retinaldehyde reductase [Nannochloropsis gaditana])

HSP 1 Score: 118.627 bits (296), Expect = 2.247e-26
Identity = 92/262 (35.11%), Postives = 128/262 (48.85%), Query Frame = 0
Query:  100 LQATNNVLHLPILFDLAWYVVWAFYIAMAPFYLLCHILFFVLDTLFAIYSFARQKVKSLILFMKGKKGEAREERAILITGCDSGFGFDLAMALAAESLACREEEKKEGRREEPRGRRWKVYAGCLSATGREQITQRAPEAAAHGILVPLSLDVTQASEVATAVDRVRAECRGELFALVNNAGIGVAGLVDWVPMEHFRKIMEVNYFGMIAVSKACLPLLKKRASRACDAPPRIVLVTSFAGLVPGQLSMGAYCASKHAAEAF 361
            L+  NN+ H+ +L +  WY  +     + PF          +  L  +Y F       L         E   ++AI ITGCD+GFG  LA+ LA +                      +VYA CL+A G E+I       A    +  + LDVT  ++V  A  RV AE    L+ALVNNAG+  +GL+DW  +  FR  MEVN+FG+++V+KA LPL+K+     C    RIV+V+S AG+  G      Y ASKHA E F
Sbjct:    5 LEFWNNLCHIDLLEEWIWYSYFTGAWLLGPF----------MAFLIVVYDFCSGFAFPLW------HVEPSRDKAIFITGCDTGFGRSLAVRLAQKGF--------------------RVYAACLTANGVEEIK------AECSTVETMMLDVTDENQVQEAAARVDAENPEGLYALVNNAGVAKSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKR-----CKG--RIVVVSSVAGVSCGYPLSAPYSASKHAVELF 217          
BLAST of EWM22715.1 vs. NCBI_GenBank
Match: gi|652776715|ref|WP_027085902.1| (short-chain dehydrogenase/reductase [Cohnella panacarvi])

HSP 1 Score: 113.235 bits (282), Expect = 4.501e-25
Identity = 76/197 (38.58%), Postives = 109/197 (55.33%), Query Frame = 0
Query:  169 AREERAILITGCDSGFGFDLAMALAAESLACREEEKKEGRREEPRGRRWKVYAGCLSATGREQITQRAPEAAAHGI---LVPLSLDVTQASEVATAVDRVRAECRGELFALVNNAGIGVAGLVDWVPMEHFRKIMEVNYFGMIAVSKACLPLLKKRASRACDAPPRIVLVTSFAGLVPGQLSMGAYCASKHAAEAFG 362
            A +  A L+TG  SGFG   A+ LA +                     W VYAG   ++  E + +   EA A GI   +VPL LDVT   ++A AV+ +R + +G L ALVNNAG    G V+ VP+E +R+  E N FG++A+++A LP++  RA R+     RIVL++S +G + G  ++  Y ASKHA E FG
Sbjct:    3 ADKRNAALVTGAGSGFGLLTALLLAEKG--------------------WMVYAGLRDSSRSEGLVK---EATARGIADQVVPLQLDVTDCGQIAQAVETIR-QRQGRLDALVNNAGFAAGGFVEEVPLERWREQFETNVFGLVAMTQAVLPMM--RAQRSG----RIVLISSVSGRI-GFPALAPYVASKHAVEGFG 168          
BLAST of EWM22715.1 vs. NCBI_GenBank
Match: gi|196000450|ref|XP_002110093.1| (hypothetical protein TRIADDRAFT_21854 [Trichoplax adhaerens] >gi|190588217|gb|EDV28259.1| hypothetical protein TRIADDRAFT_21854 [Trichoplax adhaerens])

HSP 1 Score: 109.383 bits (272), Expect = 3.776e-24
Identity = 71/195 (36.41%), Postives = 101/195 (51.79%), Query Frame = 0
Query:  170 REERAILITGCDSGFGFDLAMALAAESLACREEEKKEGRREEPRGRRWKVYAGCLSATGREQITQRAPEAAAHGILVPLSLDVTQASEVATAVDRVRA---ECRGELFALVNNAGIGVAGLVDWVPMEHFRKIMEVNYFGMIAVSKACLPLLKKRASRACDAPPRIVLVTSFAGLVPGQLSMGAYCASKHAAEAF 361
               R ILITGCDSGFG  LA  L  + + C                   V+A CL+  G  Q+ Q               +DVTQ  ++  A   ++A   E RG ++A+VNNAGI   GL+DW+PME ++K+ +VN +GM+AV+K  +P++ +          R V V S +G++P +  MGAY  SK AAE F
Sbjct:    4 NNNRYILITGCDSGFGNLLAKRL--DLIGCH------------------VFAACLTQQGVTQLAQSTSSRVKT-----FMMDVTQQQDIENAYSMIKAALPEDRG-IWAVVNNAGILRTGLIDWMPMEEYKKVADVNLWGMVAVTKRFIPMVIREQG-------RFVNVVSLSGVLPYEY-MGAYTISKFAAEGF 164          
The following BLAST results are available for this feature:
BLAST of EWM22715.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103293|gb|EWM22715.1|0.000e+0100.00dehydrogenase reductase sdr family member 9 [Nanno... [more]
gi|553193850|ref|XP_005855844.1|1.192e-11798.2417-beta-hydroxysteroid dehydrogenase type 6, parti... [more]
gi|585106696|gb|EWM25060.1|2.679e-4539.02serine threonine-protein kinase dclk3 [Nannochloro... [more]
gi|585108719|gb|EWM26631.1|2.839e-3133.71NAD(P)-binding domain containing protein [Nannochl... [more]
gi|585111089|gb|EWM28666.1|8.536e-3034.34retinol retinaldehyde reductase [Nannochloropsis g... [more]
gi|585108794|gb|EWM26706.1|8.047e-2936.23retinol dehydrogenase [Nannochloropsis gaditana][more]
gi|585108707|gb|EWM26619.1|2.540e-2731.84retinol retinaldehyde reductase [Nannochloropsis g... [more]
gi|585111118|gb|EWM28695.1|2.247e-2635.11retinol retinaldehyde reductase [Nannochloropsis g... [more]
gi|652776715|ref|WP_027085902.1|4.501e-2538.58short-chain dehydrogenase/reductase [Cohnella pana... [more]
gi|196000450|ref|XP_002110093.1|3.776e-2436.41hypothetical protein TRIADDRAFT_21854 [Trichoplax ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7977rna7977Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications