EWM22720.1, cds7952 (CDS) Nannochloropsis gaditana

Overview
NameEWM22720.1
Unique Namecds7952
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:267132..267320 -
Alignment locationKK037247.1:266530..266796 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22720.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101219g1.882.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:267132..267320 -
KK037247.1supercontigKK037247.1:266530..266796 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22720.1 vs. NCBI_GenBank
Match: gi|585103302|gb|EWM22720.1| (hypothetical protein Naga_101219g1 [Nannochloropsis gaditana])

HSP 1 Score: 310.457 bits (794), Expect = 4.065e-107
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
Query:    1 MLEEMQRQEEEQRRMPVVVVSQHANSDTGSKTKPVVMRGKDGELQFPGREEGSGDHGGTGAAESLDSCLDVFNGARYFAVTGILLAYHETEVEADPVEKTAFVRKFREYEFRRAMLGVRNLPGFWRRLADLVFRGLTWIIRVVFFDPKLAR 151
            MLEEMQRQEEEQRRMPVVVVSQHANSDTGSKTKPVVMRGKDGELQFPGREEGSGDHGGTGAAESLDSCLDVFNGARYFAVTGILLAYHETEVEADPVEKTAFVRKFREYEFRRAMLGVRNLPGFWRRLADLVFRGLTWIIRVVFFDPKLAR
Sbjct:    1 MLEEMQRQEEEQRRMPVVVVSQHANSDTGSKTKPVVMRGKDGELQFPGREEGSGDHGGTGAAESLDSCLDVFNGARYFAVTGILLAYHETEVEADPVEKTAFVRKFREYEFRRAMLGVRNLPGFWRRLADLVFRGLTWIIRVVFFDPKLAR 151          
BLAST of EWM22720.1 vs. NCBI_GenBank
Match: gi|553193872|ref|XP_005855850.1| (hypothetical protein NGA_0570100 [Nannochloropsis gaditana CCMP526] >gi|422293223|gb|EKU20523.1| hypothetical protein NGA_0570100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 124.405 bits (311), Expect = 1.469e-33
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0
Query:    1 MLEEMQRQEEEQRRMPVVVVSQHANSDTGSKTKPVVMRGKDGELQFPGREEGSGDHGGTGAAE 63
            MLEEMQR EEEQRRMPVVVVSQHANSDTGSKTKPVVM GKDGELQFPGREEGSGDHGGTGAAE
Sbjct:   66 MLEEMQRHEEEQRRMPVVVVSQHANSDTGSKTKPVVMWGKDGELQFPGREEGSGDHGGTGAAE 128          
BLAST of EWM22720.1 vs. NCBI_GenBank
Match: gi|919093461|ref|XP_013383559.1| (PREDICTED: uncharacterized protein LOC106153949 [Lingula anatina])

HSP 1 Score: 68.9366 bits (167), Expect = 8.383e-11
Identity = 39/129 (30.23%), Postives = 66/129 (51.16%), Query Frame = 0
Query:   20 VSQHANSDTGSKTKPVVMRGKDGELQF--PGREEGSGDHGGTGAAESLDSCLDVFNGARYFAVTGILLAYHETEVEADPVEKTAFVRKFREYEFRRAMLGVRNLPGFWRRLADLVFRGLTWIIRVVFFD 146
            V Q +NS+  S   PV++R KDG +++    RE        +    ++  CLD   G ++ ++  +   Y + E++     KTAF+ ++  YE +R  +G+ N P  + R   LV RGLTW   +V+ D
Sbjct:  909 VIQPSNSEWASP--PVLIRKKDGSVRWCVDYRELNKKTIKDSYPIPNICDCLDCLAGNQFLSLIDMAQGYFQIEIDEKDRNKTAFITRYGLYEHKRMAMGLTNSPASFSRAVQLVLRGLTWEKVLVYLD 1035          
BLAST of EWM22720.1 vs. NCBI_GenBank
Match: gi|1207921754|ref|XP_021349841.1| (uncharacterized protein LOC110448106 [Mizuhopecten yessoensis] >gi|1207931771|ref|XP_021355197.1| uncharacterized protein LOC110451483 [Mizuhopecten yessoensis] >gi|1207951824|ref|XP_021365943.1| uncharacterized protein LOC110458536 [Mizuhopecten yessoensis] >gi|1207957085|ref|XP_021368768.1| uncharacterized protein LOC110460270 [Mizuhopecten yessoensis] >gi|1207963129|ref|XP_021371995.1| uncharacterized protein LOC110462381 [Mizuhopecten yessoensis] >gi|1207966480|ref|XP_021373801.1| uncharacterized protein LOC110463496 [Mizuhopecten yessoensis] >gi|1207970005|ref|XP_021375693.1| uncharacterized protein LOC110464680 [Mizuhopecten yessoensis])

HSP 1 Score: 68.1662 bits (165), Expect = 1.844e-10
Identity = 29/82 (35.37%), Postives = 47/82 (57.32%), Query Frame = 0
Query:   65 LDSCLDVFNGARYFAVTGILLAYHETEVEADPVEKTAFVRKFREYEFRRAMLGVRNLPGFWRRLADLVFRGLTWIIRVVFFD 146
            ++ CLD  +GA  F+   ++  YH+ EV+     KTAFV K   +E+ R   G+ N P  ++R  +LV RG  W+I +++ D
Sbjct:  841 IEECLDTLSGATLFSTVDLMSGYHQIEVDEMDRSKTAFVTKQGLFEYTRMPFGLSNSPSTFQRAMELVLRGFQWVILLIYLD 922          
BLAST of EWM22720.1 vs. NCBI_GenBank
Match: gi|1139792625|ref|XP_019923125.1| (PREDICTED: uncharacterized protein LOC109618848, partial [Crassostrea gigas])

HSP 1 Score: 67.3958 bits (163), Expect = 3.136e-10
Identity = 37/120 (30.83%), Postives = 61/120 (50.83%), Query Frame = 0
Query:   32 TKPVVMRGKDGELQF--PGREEGSGDHGGTGAAESLDSCLDVFNGARYFAVTGILLAYHETEVEADPVEKTAFVRKFREYEFRRAMLGVRNLPGFWRRLADLVFRGLTWIIRVVFFDPKL 149
            + PV++R KDG++++    R   +           +D C D  +G  +F+      A+H+  +     +KTAF+ ++  +EFRR   G+ N P  + R  +LV RGLTW I + F D  L
Sbjct:  598 SAPVLIRKKDGQVRWCLDYRRLNNVTRKDVFPLPLIDECFDTLSGNVWFSKLDANSAFHQIMISPKDRKKTAFITRYGLFEFRRMGFGLCNAPATFSRAMNLVLRGLTWSIVLAFLDDAL 717          
BLAST of EWM22720.1 vs. NCBI_GenBank
Match: gi|919045756|ref|XP_013406092.1| (PREDICTED: uncharacterized protein LOC106170666 [Lingula anatina])

HSP 1 Score: 65.855 bits (159), Expect = 9.845e-10
Identity = 42/147 (28.57%), Postives = 71/147 (48.30%), Query Frame = 0
Query:    8 QEEEQRRMPVVVVSQHANSDTGSKTKPVVMRGKDGELQFPGREEGSGDHGGTGAAES--------LDSCLDVFNGARYFAVTGILLAYHETEVEADPVEKTAFVRKFREYEFRRAMLGVRNLPGFWRRLADLVFRGLTWIIRVVFFD 146
            +E   ++M    V Q + SD  S   PV++R KDG +++        D+       +        +D+CLD  +G+ +F+      AY +  +  +  +KTAF+ K+  YE  R   G+   P  + R+ +LVFRGL+W   + F D
Sbjct:  962 EEAHLQKMIQAGVIQESTSDWASA--PVLIRKKDGSVRY------CIDYRALNEVTTKDVFPLPLVDNCLDTLSGSVFFSKLDANSAYWQVPIREEDRKKTAFITKYGLYEHIRMAFGLCGAPATYARIMNLVFRGLSWKTVLAFLD 1100          
BLAST of EWM22720.1 vs. NCBI_GenBank
Match: gi|919004755|ref|XP_013381256.1| (PREDICTED: uncharacterized protein LOC106152279 [Lingula anatina])

HSP 1 Score: 63.929 bits (154), Expect = 5.236e-9
Identity = 40/144 (27.78%), Postives = 72/144 (50.00%), Query Frame = 0
Query:    5 MQRQEEEQRRMPVVVVSQHANSDTGSKTKPVVMRGKDGELQF--PGREEGSGDHGGTGAAESLDSCLDVFNGARYFAVTGILLAYHETEVEADPVEKTAFVRKFREYEFRRAMLGVRNLPGFWRRLADLVFRGLTWIIRVVFFD 146
            ++ +E    +M    V Q + SD  +   PV++R +DG +++    R   +     T     ++ CLD  +G  +F+      AY + +V+ +  +KTAF+ K+  +E  R   G+ N P  + R+ +L+ RGLTW   + F D
Sbjct:  647 VEEEEAHLNKMLKAGVIQESTSDWAAA--PVLIRKRDGSVRWCIDYRALNNVTVKDTYPLPLMEDCLDTLSGKTWFSKLDANSAYWQIKVKKEDRKKTAFITKYGLFEHVRMGFGLTNAPATYSRVVNLLMRGLTWKTVLAFLD 788          
BLAST of EWM22720.1 vs. NCBI_GenBank
Match: gi|1022748247|gb|KZS00679.1| (Uncharacterized protein APZ42_002933, partial [Daphnia magna])

HSP 1 Score: 61.2326 bits (147), Expect = 1.581e-8
Identity = 36/123 (29.27%), Postives = 59/123 (47.97%), Query Frame = 0
Query:   26 SDTGSKTKPVVMRGKDGELQF--PGREEGSGDHGGTGAAESLDSCLDVFNGARYFAVTGILLAYHETEVEADPVEKTAFVRKFREYEFRRAMLGVRNLPGFWRRLADLVFRGLTWIIRVVFFD 146
            SD+   ++ V+++ KDG ++F    R               +D  LD  NGA +F+   +   Y +  V    V+KTAFV +   +EF+R   G+ N P  ++RL D V     W+  +V+ D
Sbjct:    8 SDSPWSSQVVLVKKKDGSIRFCVDYRRLNQATTRDVYPLPRIDEILDNLNGASFFSTIDLYRGYWQVPVNKSDVKKTAFVTRDGLFEFKRMPFGLSNAPATFQRLMDQVLASHKWLHCLVYLD 130          
BLAST of EWM22720.1 vs. NCBI_GenBank
Match: gi|1022764431|gb|KZS09850.1| (Uncharacterized protein APZ42_025824, partial [Daphnia magna])

HSP 1 Score: 62.3882 bits (150), Expect = 1.648e-8
Identity = 39/117 (33.33%), Postives = 57/117 (48.72%), Query Frame = 0
Query:   35 VVMRGKDGELQFPG--REEGSGDHGGTGAAESLDSCLDVFNGARYFAVTGILLAYHETEVEADPVEKTAFVRKFREYEFRRAMLGVRNLPGFWRRLADLVFRGLTWIIRVVFFDPKL 149
            V++R KD + +F    R   +     T      D   D   GA++FA   +L  Y++  V    +EKTAF+     +EF R   GV N PG ++RL D V R L W + +V+ D  L
Sbjct:  722 VLVRKKDQDYRFCADYRRLNAVTKRDTYPLPRADDIFDRLAGAKWFASIDLLSGYYQVPVAEKDIEKTAFITPDGLFEFTRMPQGVHNGPGCFQRLMDRVLRHLKWSMCLVYLDDCL 838          
BLAST of EWM22720.1 vs. NCBI_GenBank
Match: gi|954471089|gb|KRZ01677.1| (Retrovirus-related Pol polyprotein from transposon opus [Trichinella zimbabwensis])

HSP 1 Score: 62.003 bits (149), Expect = 1.809e-8
Identity = 28/82 (34.15%), Postives = 45/82 (54.88%), Query Frame = 0
Query:   65 LDSCLDVFNGARYFAVTGILLAYHETEVEADPVEKTAFVRKFREYEFRRAMLGVRNLPGFWRRLADLVFRGLTWIIRVVFFD 146
            +D   D  +GA++F+   +   + + EVE   +E+TAF   F  Y+FR    G+ N P  ++RL +LV +GL W    V+ D
Sbjct:  335 IDDTFDALSGAKWFSTMDLSSGFWQVEVEEKDMERTAFCTPFGLYQFRVMPFGLCNAPSIFQRLMELVLQGLNWSTCPVYLD 416          
The following BLAST results are available for this feature:
BLAST of EWM22720.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103302|gb|EWM22720.1|4.065e-107100.00hypothetical protein Naga_101219g1 [Nannochloropsi... [more]
gi|553193872|ref|XP_005855850.1|1.469e-3396.83hypothetical protein NGA_0570100 [Nannochloropsis ... [more]
gi|919093461|ref|XP_013383559.1|8.383e-1130.23PREDICTED: uncharacterized protein LOC106153949 [L... [more]
gi|1207921754|ref|XP_021349841.1|1.844e-1035.37uncharacterized protein LOC110448106 [Mizuhopecten... [more]
gi|1139792625|ref|XP_019923125.1|3.136e-1030.83PREDICTED: uncharacterized protein LOC109618848, p... [more]
gi|919045756|ref|XP_013406092.1|9.845e-1028.57PREDICTED: uncharacterized protein LOC106170666 [L... [more]
gi|919004755|ref|XP_013381256.1|5.236e-927.78PREDICTED: uncharacterized protein LOC106152279 [L... [more]
gi|1022748247|gb|KZS00679.1|1.581e-829.27Uncharacterized protein APZ42_002933, partial [Dap... [more]
gi|1022764431|gb|KZS09850.1|1.648e-833.33Uncharacterized protein APZ42_025824, partial [Dap... [more]
gi|954471089|gb|KRZ01677.1|1.809e-834.15Retrovirus-related Pol polyprotein from transposon... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7974rna7974Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications