EWM29875.1, cds794 (CDS) Nannochloropsis gaditana

Overview
NameEWM29875.1
Unique Namecds794
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:433230..433291 +
Alignment locationCM002456.1:433602..436566 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29875.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100106g7.1449.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:433230..433291 +
CM002456.1supercontigCM002456.1:433602..436566 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29875.1 vs. NCBI_GenBank
Match: gi|585112457|gb|EWM29875.1| (hypothetical protein Naga_100106g7 [Nannochloropsis gaditana])

HSP 1 Score: 2051.17 bits (5313), Expect = 0.000e+0
Identity = 1008/1008 (100.00%), Postives = 1008/1008 (100.00%), Query Frame = 0
Query:    1 MGSSKPLFCEKLYAVSRPSSIVWPRQDARSTHPPLALDHVVMINGRKGAMAAAFLFLLSLIAGKAWVLHPSTSSSCAGQSFPSLVGCVAAATFHSPVKSGKAAGEEAVGGSESERRELVLANKPPDAVQRAARTRPSHKAKLPQDRQRHTANGGWSEGDVRAAHHHYQDPLHSEATSAHAPSYTRHPFSTLARTRLRGSDCNTLLNSIETYAEGASVDELSDALSRLGRLATSKEALGRICHDARFHLLLQRLVESSPLMPPKRAPFLLSSLAKFSTAPGPTVTAFISTPSVQALLPALQKRVDAGLDQYSPIAFCTVAFAFSRLRYAPHLEVEDCEIEDTKGPDKASHTPPSPSDPPDRSVLAWWSRFIEASQNRLIEFSPWELSQLVRSLMAQTGAPKEALLSPPFLTLTLRCAERQLFTAFTVRDLEGLATSLSKIPPHLFKPPQSFLETVVRAADAQLPRGFRPPSLARFLHALSRLEGFSPDPHFLRRAEQACAGWTGTWEQGPIALIVQAWSWLKYHPSEATLATLLGQARGMLEDGVFTPLNAGTLIQSLGELRRSPGDAWLSTFCEAAALKFPDMHGKDLNFILKGLAKLNWYPGDAFMVGLLGHMRPYLEGFNGADLQFTMSSIVGLHYLPHRAFLDAFQARFSRLLQDRQVSSRNLCIVLWAFAALEVPNARPFVVECMRAAIAQLEAERPRWGQWEADAPETWSLTARIRQLRQVYLYALRLEGAGSQSDRNESSLAEEFRGMGLVELLETGLRYSKEELVLAKSQESGFHREVAEILQSLGVRARRSVDCFVLDLMLESPQAAEASGQGGDKGEGLGAGTLDSTGKERQDWSGRGMSTGQRQSSEGDAVRDAEDPRTEGPPAGGKEQEIKGAKDATKPLVLLLHGPSRFLRGLTGTASPKMEAGTAFKVKILQTKSLHRFADVVSLDVWEWARQRTREEKVEFLRQKIGPTLLETYMAPSMTLASADGGGRSEKQEKKEKGKGEGKVMEGMRQVMA 1008
            MGSSKPLFCEKLYAVSRPSSIVWPRQDARSTHPPLALDHVVMINGRKGAMAAAFLFLLSLIAGKAWVLHPSTSSSCAGQSFPSLVGCVAAATFHSPVKSGKAAGEEAVGGSESERRELVLANKPPDAVQRAARTRPSHKAKLPQDRQRHTANGGWSEGDVRAAHHHYQDPLHSEATSAHAPSYTRHPFSTLARTRLRGSDCNTLLNSIETYAEGASVDELSDALSRLGRLATSKEALGRICHDARFHLLLQRLVESSPLMPPKRAPFLLSSLAKFSTAPGPTVTAFISTPSVQALLPALQKRVDAGLDQYSPIAFCTVAFAFSRLRYAPHLEVEDCEIEDTKGPDKASHTPPSPSDPPDRSVLAWWSRFIEASQNRLIEFSPWELSQLVRSLMAQTGAPKEALLSPPFLTLTLRCAERQLFTAFTVRDLEGLATSLSKIPPHLFKPPQSFLETVVRAADAQLPRGFRPPSLARFLHALSRLEGFSPDPHFLRRAEQACAGWTGTWEQGPIALIVQAWSWLKYHPSEATLATLLGQARGMLEDGVFTPLNAGTLIQSLGELRRSPGDAWLSTFCEAAALKFPDMHGKDLNFILKGLAKLNWYPGDAFMVGLLGHMRPYLEGFNGADLQFTMSSIVGLHYLPHRAFLDAFQARFSRLLQDRQVSSRNLCIVLWAFAALEVPNARPFVVECMRAAIAQLEAERPRWGQWEADAPETWSLTARIRQLRQVYLYALRLEGAGSQSDRNESSLAEEFRGMGLVELLETGLRYSKEELVLAKSQESGFHREVAEILQSLGVRARRSVDCFVLDLMLESPQAAEASGQGGDKGEGLGAGTLDSTGKERQDWSGRGMSTGQRQSSEGDAVRDAEDPRTEGPPAGGKEQEIKGAKDATKPLVLLLHGPSRFLRGLTGTASPKMEAGTAFKVKILQTKSLHRFADVVSLDVWEWARQRTREEKVEFLRQKIGPTLLETYMAPSMTLASADGGGRSEKQEKKEKGKGEGKVMEGMRQVMA
Sbjct:    1 MGSSKPLFCEKLYAVSRPSSIVWPRQDARSTHPPLALDHVVMINGRKGAMAAAFLFLLSLIAGKAWVLHPSTSSSCAGQSFPSLVGCVAAATFHSPVKSGKAAGEEAVGGSESERRELVLANKPPDAVQRAARTRPSHKAKLPQDRQRHTANGGWSEGDVRAAHHHYQDPLHSEATSAHAPSYTRHPFSTLARTRLRGSDCNTLLNSIETYAEGASVDELSDALSRLGRLATSKEALGRICHDARFHLLLQRLVESSPLMPPKRAPFLLSSLAKFSTAPGPTVTAFISTPSVQALLPALQKRVDAGLDQYSPIAFCTVAFAFSRLRYAPHLEVEDCEIEDTKGPDKASHTPPSPSDPPDRSVLAWWSRFIEASQNRLIEFSPWELSQLVRSLMAQTGAPKEALLSPPFLTLTLRCAERQLFTAFTVRDLEGLATSLSKIPPHLFKPPQSFLETVVRAADAQLPRGFRPPSLARFLHALSRLEGFSPDPHFLRRAEQACAGWTGTWEQGPIALIVQAWSWLKYHPSEATLATLLGQARGMLEDGVFTPLNAGTLIQSLGELRRSPGDAWLSTFCEAAALKFPDMHGKDLNFILKGLAKLNWYPGDAFMVGLLGHMRPYLEGFNGADLQFTMSSIVGLHYLPHRAFLDAFQARFSRLLQDRQVSSRNLCIVLWAFAALEVPNARPFVVECMRAAIAQLEAERPRWGQWEADAPETWSLTARIRQLRQVYLYALRLEGAGSQSDRNESSLAEEFRGMGLVELLETGLRYSKEELVLAKSQESGFHREVAEILQSLGVRARRSVDCFVLDLMLESPQAAEASGQGGDKGEGLGAGTLDSTGKERQDWSGRGMSTGQRQSSEGDAVRDAEDPRTEGPPAGGKEQEIKGAKDATKPLVLLLHGPSRFLRGLTGTASPKMEAGTAFKVKILQTKSLHRFADVVSLDVWEWARQRTREEKVEFLRQKIGPTLLETYMAPSMTLASADGGGRSEKQEKKEKGKGEGKVMEGMRQVMA 1008          
BLAST of EWM29875.1 vs. NCBI_GenBank
Match: gi|553190633|ref|XP_005855232.1| (hypothetical protein NGA_0160400 [Nannochloropsis gaditana CCMP526] >gi|422293834|gb|EKU21134.1| hypothetical protein NGA_0160400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 86.6557 bits (213), Expect = 1.030e-13
Identity = 82/316 (25.95%), Postives = 128/316 (40.51%), Query Frame = 0
Query:  363 LAWWSRFIEASQNRLIEFSPWELSQLVRSLMAQTGAPKEALLSPPFLTLTLRCAERQLFTAFTVRDLEGLATSLSKIPPHLFKPPQSFLETVVRAADAQLPRGFRPPSLARFLHALSRLEGFSPDPHFLRRAEQACAGWTGTWEQGPIALIVQAWSWLKYHPSEATLATLLGQARGMLEDGVFTPLNAGTLIQSLGELRRSPGDAWLSTFCEAAALKFPDMHGKDLNFILKGLAKLNWYPGDAFMVGLLGHMRPYLEGFNGADLQFTMSSIVGLHYLPHRAFLDAFQARFSRLLQDRQVSSRNLCIVLWAFAALEV 678
            L + + F E   N L++F P  L  ++R        P +     PFL +   CA R+L   F  R L      L+ +     +PP  F+  +VR  D QL                   + FS                   W   P A  + A S L Y P E  L  ++ +A+  L    F P      I  L +L+  PG  ++  + +A  LK         + +L  +A+L +YPG +FM      + P L  F   +L      +  LHY P  AFL A+    +   Q R+++ +++ +VLW+FA L+V
Sbjct:  324 LEFMALFTEVVANSLMDFQPVGLMSIIRGFAKLGHDPGK-----PFLKVFTACAMRKLHN-FPPRALSSTIQGLATL---RHQPPPEFMALLVREMDRQL-------------------DDFS-------------------WLDIPNA--ITALSKLLYLPPEPFLRRVVAKAKEKLS--AFNPQALCNFIFGLFKLQHDPGVEFMPVYFQACHLKLDQFTPAGFSSMLHSVARLGYYPGTSFMEDFEALVAPRLGRFTKGELWKLAHGLATLHYRPQDAFLTAYWEALAG--QGRRLTVKDVSLVLWSFAVLDV 586          
BLAST of EWM29875.1 vs. NCBI_GenBank
Match: gi|585110040|gb|EWM27763.1| (hypothetical protein Naga_100982g1 [Nannochloropsis gaditana])

HSP 1 Score: 80.1073 bits (196), Expect = 1.131e-11
Identity = 79/314 (25.16%), Postives = 125/314 (39.81%), Query Frame = 0
Query:  363 LAWWSRFIEASQNRLIEFSPWELSQLVRSLMAQTGAPKEALLSPPFLTLTLRCAERQLFTAFTVRDLEGLATSLSKIPPHLFKPPQSFLETVVRAADAQLPRGFRPPSLARFLHALSRLEGFSPDPHFLRRAEQACAGWTGTWEQGPIALIVQAWSWLKYHPSEATLATLLGQARGMLEDGVFTPLNAGTLIQSLGELRRSPGDAWLSTFCEAAALKFPDMHGKDLNFILKGLAKLNWYPGDAFMVGLLGHMRPYLEGFNGADLQFTMSSIVGLHYLPHRAFLDAFQARFSRLLQDRQVSSRNLCIVLWAFAAL 676
            L + + F E   N L++F P  L  ++R        P +     PFL +   CA R+L   F  R L      L+ +     +PP  F+  +VR  D QL                   + FS                   W   P A  + A S L Y P E  L  ++ +A+  L    F P      I  L +L+  PG  ++  + +A  LK         + +L  +A+L +YPG +FM      + P L  F   +L      +  LHY P  AFL A+    +   Q R+++ +++ +VLW  ++L
Sbjct:  348 LEFMALFTEVVANSLMDFQPVGLMSIIRGFAKLGHDPGK-----PFLKVFTACAMRKLHN-FPPRALSSTIQGLATL---RHQPPPEFMALLVREMDRQL-------------------DDFS-------------------WLDIPNA--ITALSKLLYLPPEPFLRRVVAKAKEKLS--AFNPQALCNFIFGLFKLQHDPGVEFMPVYFQACHLKLDQFTPAGFSSMLHSVARLGYYPGTSFMEDFEALVAPRLGRFTKGELWKLAHGLATLHYRPQDAFLTAYWEALAG--QGRRLTVKDVSLVLWTTSSL 608          
BLAST of EWM29875.1 vs. NCBI_GenBank
Match: gi|799031407|ref|WP_045917601.1| (hypothetical protein [Orientia tsutsugamushi] >gi|788102611|gb|KJV71514.1| hypothetical protein OTSTA716_2236 [Orientia tsutsugamushi str. TA716])

HSP 1 Score: 74.7146 bits (182), Expect = 5.829e-10
Identity = 68/332 (20.48%), Postives = 134/332 (40.36%), Query Frame = 0
Query:  365 WWSRFIEASQNRLIEFSPWELSQLVRSLMAQTGAPKEALLSPPFLTLTLRCAERQLFTAFTVRDLEGLATSL---SKIPPHLFKPPQSFLETVVRAADAQLPRGFRPPSLARFLHALSRLEGFSPDPHFLRRAEQACAGWTGTWEQGPIALIVQAWSWLKYHPSEATLATLLGQARGMLEDGVFTPLNAGTLIQSLGELRRSPGDAWLSTFCEAAALKFPDMHGKDLNFILKGLAKLNWYPGDAFMVGLLGHMRPYLEGFNGADLQFTMSSIVGLHYLPHRAFLDAFQARFSRLLQDRQVSSRNLCIVLWAFAALEVPNARPFVVECMRAAI 693
            + + F  +S N +  F+   LS  + +L   +  P E  +   F      C   ++  +   +DL     +L   S IPP+ F   +SF E  +      +   F+  SL+  ++AL RL   +P   FL     +      ++    ++  +     LK  P    L +       ++    F        I +LG L  +P + +L++F  ++       + ++L+  + GLA LN  P + F+    G     +  F   +L  T+++   L    H  F + F  + S++      ++++L   ++AF  L +     F+ +C   A+
Sbjct:   65 FIASFFNSSVNIINSFNSQNLSNTIYALGRLSITPTEEFIESFF-----ECYVNRI-NSLNSQDLSNTIYALGRLSVIPPNEF--IESFFEHCIN-----IMSSFKAQSLSNTIYALGRL-SITPTEEFLASFFNSSVNIINSFNSQELSNTINGLKNLKIKPPNEFLESFFEHCINIMSS--FNSQELSNTIYALGRLSITPTEEFLASFFNSSVNIINSFNSQELSNTIGGLAHLNIKPPEEFLESFFGRSENIMSSFKAQELSMTINAFRRLKITSHNEFNNVFLMQSSKV---NDFTAQSLSTTIFAFGCLGIKPTDEFLDDCFERAV 377          
BLAST of EWM29875.1 vs. NCBI_GenBank
Match: gi|324983394|gb|ADY68544.1| (Tab3, partial (chloroplast) [Chlamydomonas reinhardtii])

HSP 1 Score: 70.4774 bits (171), Expect = 1.676e-8
Identity = 44/144 (30.56%), Postives = 66/144 (45.83%), Query Frame = 0
Query:  513 IVQAWSWLKYHPSEATLATLLGQARGMLEDGVFTPLNAGTLIQSLGELRRSPGDAWLSTFCEAAALKFPDMHGKDLNFILKGLAKLNWYPGDAFMVGLLGHMRPYLEGFNGADLQFTMSSIVGLHYLPHRAFLDAFQARFSRLL 656
            +V A+  L Y PS+  L +        L     TP +  TL+ SLG     P  AWL + C AAA   P      L  +  GL  +   P D ++   LG     L G++ A+L  T+SS+ GL   P   +++ F AR + ++
Sbjct:  408 LVSAFGSLGYRPSQTWLLSFTRCTAPHLTTYASTPESLPTLLSSLGNTGHRPPPAWLQSACAAAAPHLPSYSSAQLKALAAGLCAMRHLPDDPWVAAYLGASAQLLPGYSAAELTVTISSLAGLGCRPGDEWMEGFYARATAVV 551          
BLAST of EWM29875.1 vs. NCBI_GenBank
Match: gi|159468832|ref|XP_001692578.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158278291|gb|EDP04056.1| predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 66.6254 bits (161), Expect = 2.143e-7
Identity = 42/137 (30.66%), Postives = 62/137 (45.26%), Query Frame = 0
Query:  520 LKYHPSEATLATLLGQARGMLEDGVFTPLNAGTLIQSLGELRRSPGDAWLSTFCEAAALKFPDMHGKDLNFILKGLAKLNWYPGDAFMVGLLGHMRPYLEGFNGADLQFTMSSIVGLHYLPHRAFLDAFQARFSRLL 656
            L Y PS+  L +        L     TP +  TL+ SLG     P  AWL + C AAA   P      L  +  GL  +   P D ++   LG     L G++ A+L  T+SS+ GL   P   +++ F AR + ++
Sbjct:  284 LGYRPSQTWLLSFTRCTAPHLTTYASTPESLPTLLSSLGNTGHRPPPAWLQSACAAAAPHLPSYSSAQLKALAAGLCAMRHLPDDPWVAAYLGASAQLLPGYSAAELTVTISSLAGLGCRPGDEWMEGFYARATAVV 420          
The following BLAST results are available for this feature:
BLAST of EWM29875.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585112457|gb|EWM29875.1|0.000e+0100.00hypothetical protein Naga_100106g7 [Nannochloropsi... [more]
gi|553190633|ref|XP_005855232.1|1.030e-1325.95hypothetical protein NGA_0160400 [Nannochloropsis ... [more]
gi|585110040|gb|EWM27763.1|1.131e-1125.16hypothetical protein Naga_100982g1 [Nannochloropsi... [more]
gi|799031407|ref|WP_045917601.1|5.829e-1020.48hypothetical protein [Orientia tsutsugamushi] >gi|... [more]
gi|324983394|gb|ADY68544.1|1.676e-830.56Tab3, partial (chloroplast) [Chlamydomonas reinhar... [more]
gi|159468832|ref|XP_001692578.1|2.143e-730.66predicted protein [Chlamydomonas reinhardtii] >gi|... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna794rna794Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications