EWM22734.1, cds7936 (CDS) Nannochloropsis gaditana

Overview
NameEWM22734.1
Unique Namecds7936
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:226249..226723 -
Alignment locationKK037247.1:225887..226071 -
Alignment locationKK037247.1:225597..225702 -
Alignment locationKK037247.1:225245..225294 -
Alignment locationKK037247.1:224978..225128 -
Alignment locationKK037247.1:224692..224800 -
Alignment locationKK037247.1:224530..224586 -
Alignment locationKK037247.1:224169..224418 -
Alignment locationKK037247.1:223852..223977 -
Alignment locationKK037247.1:223554..223691 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22734.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100209g4.4960.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:226249..226723 -
KK037247.1supercontigKK037247.1:225887..226071 -
KK037247.1supercontigKK037247.1:225597..225702 -
KK037247.1supercontigKK037247.1:225245..225294 -
KK037247.1supercontigKK037247.1:224978..225128 -
KK037247.1supercontigKK037247.1:224692..224800 -
KK037247.1supercontigKK037247.1:224530..224586 -
KK037247.1supercontigKK037247.1:224169..224418 -
KK037247.1supercontigKK037247.1:223852..223977 -
KK037247.1supercontigKK037247.1:223554..223691 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM22734.1 vs. NCBI_GenBank
Match: gi|585103327|gb|EWM22734.1| (hypothetical protein Naga_100209g4 [Nannochloropsis gaditana])

HSP 1 Score: 1128.24 bits (2917), Expect = 0.000e+0
Identity = 548/548 (100.00%), Postives = 548/548 (100.00%), Query Frame = 0
Query:    1 MVRPPSLSEPNVEDNEAPLSHPLSPAQASPPPPSAAGSPLTNDSMFTPSALLAKALLCDDEDDNCSQGNVSAEERMERGKNKGRRSKQHPKLGGQSSLGGSPSAQPSLQTILRQVQPPSTRTGQFHRQQEVKMQRIRGVLLASLSINLVCGFMSATMTGYVTIVLAWGFFARPSPPPSTPSLLGAKDHETSTIYLSWIALFAVALFLIYIACFGIHSARKVSINHLLRYFWGAALGITPLVLVTTFAFDFYDISRSFIRHHWDGKAMEGLRLVFCSQGAEAGGKCAAPVLGGPNFSSIQDWCEHYHAGADDCEAIKHAALSQADKWIYFMLLSAGLLGVLNLVSLLVSMHLCVRLITPSVIMTYANDNISYLLLLPAGCCLGISLFLFSHTGFSPDHTWFAWSFLCAAALTLLNSVLTLVGGRLKKRRLLQACLVSNAVVVLLLTGLCATGYIIAGELSDQGSFYTSRRAQDIACKIQLRGCCCCHYSESVPDNRCPEWGTDEVISMIAADFRIASLAALLTILYDFGGLITGFLVMKNLDNYHCEYI 548
            MVRPPSLSEPNVEDNEAPLSHPLSPAQASPPPPSAAGSPLTNDSMFTPSALLAKALLCDDEDDNCSQGNVSAEERMERGKNKGRRSKQHPKLGGQSSLGGSPSAQPSLQTILRQVQPPSTRTGQFHRQQEVKMQRIRGVLLASLSINLVCGFMSATMTGYVTIVLAWGFFARPSPPPSTPSLLGAKDHETSTIYLSWIALFAVALFLIYIACFGIHSARKVSINHLLRYFWGAALGITPLVLVTTFAFDFYDISRSFIRHHWDGKAMEGLRLVFCSQGAEAGGKCAAPVLGGPNFSSIQDWCEHYHAGADDCEAIKHAALSQADKWIYFMLLSAGLLGVLNLVSLLVSMHLCVRLITPSVIMTYANDNISYLLLLPAGCCLGISLFLFSHTGFSPDHTWFAWSFLCAAALTLLNSVLTLVGGRLKKRRLLQACLVSNAVVVLLLTGLCATGYIIAGELSDQGSFYTSRRAQDIACKIQLRGCCCCHYSESVPDNRCPEWGTDEVISMIAADFRIASLAALLTILYDFGGLITGFLVMKNLDNYHCEYI
Sbjct:    1 MVRPPSLSEPNVEDNEAPLSHPLSPAQASPPPPSAAGSPLTNDSMFTPSALLAKALLCDDEDDNCSQGNVSAEERMERGKNKGRRSKQHPKLGGQSSLGGSPSAQPSLQTILRQVQPPSTRTGQFHRQQEVKMQRIRGVLLASLSINLVCGFMSATMTGYVTIVLAWGFFARPSPPPSTPSLLGAKDHETSTIYLSWIALFAVALFLIYIACFGIHSARKVSINHLLRYFWGAALGITPLVLVTTFAFDFYDISRSFIRHHWDGKAMEGLRLVFCSQGAEAGGKCAAPVLGGPNFSSIQDWCEHYHAGADDCEAIKHAALSQADKWIYFMLLSAGLLGVLNLVSLLVSMHLCVRLITPSVIMTYANDNISYLLLLPAGCCLGISLFLFSHTGFSPDHTWFAWSFLCAAALTLLNSVLTLVGGRLKKRRLLQACLVSNAVVVLLLTGLCATGYIIAGELSDQGSFYTSRRAQDIACKIQLRGCCCCHYSESVPDNRCPEWGTDEVISMIAADFRIASLAALLTILYDFGGLITGFLVMKNLDNYHCEYI 548          
BLAST of EWM22734.1 vs. NCBI_GenBank
Match: gi|223994719|ref|XP_002287043.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978358|gb|EED96684.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 107.457 bits (267), Expect = 9.861e-21
Identity = 86/346 (24.86%), Postives = 147/346 (42.49%), Query Frame = 0
Query:  213 FGIHSARKVSINHLLRYFWGAALGITPLVLVTTFAFDFYDISRSFIRHHWDGKAMEGLRLVFCSQGAEAGGKCAAPVLGGPNFSSIQDWC-EHYHAGADDCEAIKHAALSQADKWIYFMLLSAGLLGVLNLVSLLVSMHLCVRLITPSVIMTYANDNISYLLLLPAGCCLGISLFLF---SHTGFS-PDHTWFAWSFLC-------AAALTLLNSVLTLVGGRLKKRRLLQACLVSNAVVVLLLTGLCATGYIIAGELSDQGSFYTS------RRAQDIACKIQLRGCCCCHYSESVPDNRCPEWGTDEVISMIAADFRIASLAALLTILYDFGGLITGFLVMKNL 540
            F   + R+V++   +R+ W     +   + +    FD+Y +   +++H WD  +M   R VFC  G  A  +C  P+ GG +++S   WC E Y  G+ +C  I++ A +      Y    S G+  +  +  + V++ +   +IT  ++      NI   L LP   C GI   L    S+   S  D  W   ++L        AA +       T++ GR KK        V   VVV  L  +  T + +A   +    +  S          +IAC +   G C    S  V +  CPEW  D+V  ++    + ++  A + ++Y    L  GFL+ ++L
Sbjct:  445 FAQTAIREVNLVRSVRFMWSLLWLLPVQIFLMIGLFDYYRVMEVWLKHWWDSASMSYFRNVFCEDGT-ADAECTVPIQGGASYNSEDAWCLEKY--GSTECTEIRNEAQTYCTVASYIFFTSNGVWALFLVALMWVTLSVLQAIITVPIVQRSKESNIPLWLTLPIVGCFGIGYILLYGPSNVTVSIQDVYWIGLTYLISGGSFALAALVGYFLQFYTVMNGREKK--------VKQGVVVFFLVTIVVTVFSVATIFAISLIYSLSIVDIPVESFHNIACYLDFGGSCSGCNSNIVAE-ICPEWSQDDVTRVLKTIMKQSATVAAIFLVYALITLRYGFLLFRHL 778          
BLAST of EWM22734.1 vs. NCBI_GenBank
Match: gi|1210531551|dbj|GAX09907.1| (hypothetical protein FisN_11Lh108 [Fistulifera solaris])

HSP 1 Score: 74.3294 bits (181), Expect = 2.720e-10
Identity = 70/338 (20.71%), Postives = 140/338 (41.42%), Query Frame = 0
Query:  176 PPSTPSLLGAKDHETSTIYLSWIALFAVALFLIYIACFGIHSARKVSINHLLRYFWGAALGITPLVLVTTFA-FDFYDISRSFIRHHWDGKAMEGLRLVFCSQGAEAGGKCAAPVLGGPNFSSIQDWCEHYHAGADDCEAIKHAALSQADKWIYFMLLSAGLLGVLNLVSLLVSMHLCVRLITPSVIMTYANDNISYLLLLPAGCCLGIS-LFLFSHTGFSPDHT------WFAWSFLCAAALTLLNSVL-------TLVGGRLKKRRLLQACLVSNAVVVLLLTGLCATGYIIAGELSDQGSFYTSRRAQDIACKIQLRGCCCCHYSESVPDNRCPE 498
            P STP+ +    H    I  +   + ++A  L+ +    +   R V++   +RY W   L I P+ + +    FD++ ++R +++H W  +++   R  FC   +     CAA     P   ++  WC   +    +C  I+  A  + DK++        + G++ ++ LL+ + +   +I+  ++      N+     LP   C+G   LF+FS +    +        W    F+ A  L  L ++L       T++  R K+ ++L        + V+ +  +   G  IA  +S   +  +     +IAC +     C     +     RCP+
Sbjct:  289 PDSTPADIEVLSH-VWNINGAVFTMGSIAFLLLVMTIVIVPVVRSVNLKGAIRYLW-LLLWIIPIQIYSVIGLFDYFRVTRVWVKHWWRDESLATFRRAFCKPSSSYNTLCAA-----PEVENVTSWC-LVNFNVTNCGEIRADAQDKFDKFMIAYYYGNAIWGIVLVLLLLLVVRILESIISRPLVQKSRESNVPAWFSLPILGCIGNGLLFVFSSSSELVNQADRSSTFWVGLLFVAAGGLFFLAAILGWFISSYTILNTRDKRYKMLAVNFFLIIIAVVFILLIWIVGGSIAFSISLVENPLSEEARGNIACFLDQANTCTGCDQDPSDSIRCPD 618          
BLAST of EWM22734.1 vs. NCBI_GenBank
Match: gi|1072237887|gb|OEU22614.1| (hypothetical protein FRACYDRAFT_232772 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 73.9442 bits (180), Expect = 3.406e-10
Identity = 50/190 (26.32%), Postives = 87/190 (45.79%), Query Frame = 0
Query:  203 VALFLIYIACFGIHSARKVSINHLLRYFWGAALGITPL-VLVTTFAFDFYDISRSFIRHHWDGKAMEGLRLVFCSQGAEAGGKCAAPVLGGPNFSSIQDWC-EHYHAGADDCEAIKHAALSQADKWIYFMLLSAGLLGVLNLVSLLVSMHLCVRLITPSVIMTYANDNISYLLLLPAGC-CLGISLFLFS 389
            +AL L++   +     ++V +   LR+ W   L I P+   +    FD++ ++  +I+H+W+ + M   R  +CS G  A   C  P++G P+  S  DWC   Y+  A  C  I+  A  +   W+     S    G + +  +L+ +    R+I+  ++      NI   L  P  C  L  S FLF+
Sbjct:  356 LALVLLFTCVWTFRIIKEVDLVGALRFLW-ILLWILPVYTFLCIIVFDYHQVTSIWIKHYWNVEQMWWFRKHYCSPGT-AETLCMVPIVGAPDHISEDDWCTSKYNTTA--CTEIRDEAQKETGFWLMVFYRSFASWGYIYMFVMLLIIKSLERIISKPMVQKSREINIVGWLTFPVFCTALFASFFLFA 541          
BLAST of EWM22734.1 vs. NCBI_GenBank
Match: gi|397623899|gb|EJK67187.1| (hypothetical protein THAOC_11811 [Thalassiosira oceanica])

HSP 1 Score: 71.2478 bits (173), Expect = 1.921e-9
Identity = 40/159 (25.16%), Postives = 77/159 (48.43%), Query Frame = 0
Query:  184 GAKDHETSTIYLSWIALFAVALFLIYIACFGI----------HSARKVSINHLLRYFWGAALGITPLVLVTTFA-FDFYDISRSFIRHHWDGKAMEGLRLVFCSQGAEAGGKCAAPVLGGPNFSSIQDWCEHYHAGADDCEAIKHAA--LSQADKWIYF 329
            G  D     + +  + L+++  F+ +++ FG+           + R V++   +R+ W   L + P+ +      FD+Y+++    +H W    M  +R ++C +G  + GKC  P+ GG  + S   WC+    GA DC +I+++A  LS     IY+
Sbjct:  430 GVPDDGEDQVPMLTMTLWSLETFVYFLSIFGVILLIACLVAQKAIRNVNLGGNIRFMW-VLLWLLPIQIFCAIGLFDYYNVNYVTTKHRWLSPTMVWVRDLYCEEGT-SNGKCTVPIDGGEGYESEDAWCKANFDGATDCTSIRNSAQNLSNVVSQIYY 586          
BLAST of EWM22734.1 vs. NCBI_GenBank
Match: gi|301101906|ref|XP_002900041.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102616|gb|EEY60668.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 64.3142 bits (155), Expect = 1.774e-7
Identity = 71/279 (25.45%), Postives = 115/279 (41.22%), Query Frame = 0
Query:  226 LLRYFWGAALGITPLVLVTTFAFDFYDISRSFIRHHWDGKAMEGLRLVFCSQGAEAGGKCAAPVLGGPNFSSIQDWCEHYHAGADDCEAIKHAALSQADKWIYFMLLSAGLLGVLNLVSLLVSMHLCVRLITPSVIM--TYANDNISYLLLLPAGCCLGISLFLFS-----HTGFSPDHTWFAWSFLCAAALTLLNSVLTLVGGRLKKRRLLQACLV--SNAVVVLLLTGLCATGYIIAGELSDQ-GSFYTSRRAQDIACKIQLRGCCCCH--YSESVP 492
            LL +F+   L +T L +    AF F D   S+++HHW    +  LR  +C         CA        +S   D+ EH                          +++ G +GV  ++ ++ SM   VR++T  ++M    +  N+++ L       LG  LF+F      H   +    W A  F+    L +  SVL ++G R K R LL   ++   + +V LL+  + A  +      SD   S Y +  +  +AC I L GC  C    SE +P
Sbjct:   67 LLIFFFVNFLLVTGLFVACYTAFFFQDALESWVKHHWTANVLAALRDSWC---------CA-------TYSDAVDYLEHR-------------------------VVAIGAIGVACMLLVIASMFCVVRIVTVPIVMRSMLSVMNVAFTL-------LGTGLFIFGLSVKVHDEMTSGQRWIAIIFIVVGTLMIALSVLGIIGSRSKSRSLLLIYIIGLGSCLVALLVCSVSAFSF------SDHLASTYNAHTSSTLACDINLSGCTNCTDVTSEMIP 291          
BLAST of EWM22734.1 vs. NCBI_GenBank
Match: gi|298714235|emb|CBJ27371.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 62.003 bits (149), Expect = 1.882e-7
Identity = 40/150 (26.67%), Postives = 71/150 (47.33%), Query Frame = 0
Query:  407 AAALTLLNSVLTLVGGRLKKRRLLQACLVSNAVVVLLLTGLCATGYIIAGELSDQGSFYTSRRAQDIACKIQLRGCCCCHYS-------ESVPDNRCPEWGTDEVISMIAADF-RIASLAALLTILYDFGGLITGFLVMKNLDNYHCEYI 548
              AL L+ +V+ ++ G L+   LLQ  +     V++L   L   G +    L+D            IAC++ + GCCCC Y+        +VP   CPEW   + ++ +A  F ++  L +++++++   GL    +   NL  Y  +YI
Sbjct:   42 VGALLLVVAVMGVLAGHLRHHLLLQVYMAGLGAVLMLYLVLITLGLVSWARLADGFDPDDPEGLVRIACEVGVHGCCCCRYTPELDFSLYTVPG--CPEWSDPKELAQVAIVFVKLGLLTSVMSVVFVLCGLWASVMFHNNLKGYQVDYI 189          
BLAST of EWM22734.1 vs. NCBI_GenBank
Match: gi|568059784|gb|ETM56350.1| (hypothetical protein L914_00655 [Phytophthora parasitica])

HSP 1 Score: 62.7734 bits (151), Expect = 6.662e-7
Identity = 67/279 (24.01%), Postives = 113/279 (40.50%), Query Frame = 0
Query:  226 LLRYFWGAALGITPLVLVTTFAFDFYDISRSFIRHHWDGKAMEGLRLVFCSQGAEAGGKCAAPVLGGPNFSSIQDWCEHYHAGADDCEAIKHAALSQADKWIYFMLLSAGLLGVLNLVSLLVSMHLCVRLITPSVIMTYANDNISYLLLLPAGCCLGISLFLFS-----HTGFSPDHTWFAWSFLCAAALTLLNSVLTLVGGRLKKRRLLQACLV--SNAVVVLLLTGLCATGYIIAGELSDQ-GSFYTSRRAQDIACKIQLRGCCCC--HYSESVPDN 494
            LL +F+   L +T L +    AF F D   S+++HHW    +  LR   C                          C  Y               S+A  ++ + +++ G +GV  ++ ++ SM+  VR++T  +IM      ++ +  L     LG  LF+F      H   +    W A  F+    L +  SVL  +G + K R LL   ++   + ++ LL+  + A  +      SD   S Y +  +  +AC I L GC  C    +E +P N
Sbjct:   81 LLIFFFVNFLLVTGLFVACYTAFFFQDALESWVKHHWTANVLAALRDSSC--------------------------CATY---------------SEAVDYLEYRVVAIGAIGVACMLLVIASMYCVVRIVTVPIIMRSMLSVMNAIFTL-----LGTGLFIFGLSVKVHDEMTSGQRWIAIIFIVVGTLMVALSVLGFIGSKSKSRSLLLIYIIGLGSCLIALLVCSVSAFSF------SDHLASTYNAHTSSTLACDINLSGCTNCTDMATEIIPCN 307          
The following BLAST results are available for this feature:
BLAST of EWM22734.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585103327|gb|EWM22734.1|0.000e+0100.00hypothetical protein Naga_100209g4 [Nannochloropsi... [more]
gi|223994719|ref|XP_002287043.1|9.861e-2124.86predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210531551|dbj|GAX09907.1|2.720e-1020.71hypothetical protein FisN_11Lh108 [Fistulifera sol... [more]
gi|1072237887|gb|OEU22614.1|3.406e-1026.32hypothetical protein FRACYDRAFT_232772 [Fragilario... [more]
gi|397623899|gb|EJK67187.1|1.921e-925.16hypothetical protein THAOC_11811 [Thalassiosira oc... [more]
gi|301101906|ref|XP_002900041.1|1.774e-725.45conserved hypothetical protein [Phytophthora infes... [more]
gi|298714235|emb|CBJ27371.1|1.882e-726.67expressed unknown protein [Ectocarpus siliculosus][more]
gi|568059784|gb|ETM56350.1|6.662e-724.01hypothetical protein L914_00655 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7958rna7958Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications