EWM22755.1, cds7923 (CDS) Nannochloropsis gaditana

Overview
NameEWM22755.1
Unique Namecds7923
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:174909..175099 +
Alignment locationKK037247.1:175226..175284 +
Alignment locationKK037247.1:175388..175563 +
Alignment locationKK037247.1:175652..175761 +
Alignment locationKK037247.1:175836..176034 +
Alignment locationKK037247.1:176168..176275 +
Alignment locationKK037247.1:176386..176613 +
Alignment locationKK037247.1:176725..177012 +

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Properties
Property NameValue
Protein idEWM22755.1
Productpoly -binding protein 4 isoform c
Orig transcript idgnl|cribi|Naga_100143g5.3784.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:174909..175099 +
KK037247.1supercontigKK037247.1:175226..175284 +
KK037247.1supercontigKK037247.1:175388..175563 +
KK037247.1supercontigKK037247.1:175652..175761 +
KK037247.1supercontigKK037247.1:175836..176034 +
KK037247.1supercontigKK037247.1:176168..176275 +
KK037247.1supercontigKK037247.1:176386..176613 +
KK037247.1supercontigKK037247.1:176725..177012 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR004087KH_dom
Homology
[Close]
BLAST of EWM22755.1 vs. NCBI_GenBank
Match: gi|585103354|gb|EWM22755.1| (poly -binding protein 4 isoform c [Nannochloropsis gaditana])

HSP 1 Score: 947.577 bits (2448), Expect = 0.000e+0
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0 
Query:    1 MDMEDRYTECKESDNPPACLQSQKGHARHFTQDICMVEDFQDGQDCRSVNLSDALVDDDSPKESYSTHAPSKKPVDDCHQIRRAPYKVTPGVICSRLLIPQSRVGLAIGRKGGRIREMSATTGARINVCIQNGIGRDEAYRLIVVTGSITAVCWAVDLLAQKTGLFNGYSNILSRPKEILNHKMGRTPVMDANSLIPEGKDGIGNPSPAEENIIDGATELKNNGDRKSDQIVPLPGIRLLVHSSMAGALLGRAGSTISFIRSQSNARIVLLNEEESAMEGGIVGERVLLIVGIPDYCRRAHLLVLGALNDTNFLAKARAQQGLPGSIQQDYSKADTTLPYLRRSSKQPKNQMKDHEMTMCNRGMVNFASPVPLSFNMGVQSPYAFSPAHMNAMMSYQQQAFSMQLQEQHMLFQQQMWQYYQINPFSNNFENANMVHASIPLTEERYSMESDK 452
            MDMEDRYTECKESDNPPACLQSQKGHARHFTQDICMVEDFQDGQDCRSVNLSDALVDDDSPKESYSTHAPSKKPVDDCHQIRRAPYKVTPGVICSRLLIPQSRVGLAIGRKGGRIREMSATTGARINVCIQNGIGRDEAYRLIVVTGSITAVCWAVDLLAQKTGLFNGYSNILSRPKEILNHKMGRTPVMDANSLIPEGKDGIGNPSPAEENIIDGATELKNNGDRKSDQIVPLPGIRLLVHSSMAGALLGRAGSTISFIRSQSNARIVLLNEEESAMEGGIVGERVLLIVGIPDYCRRAHLLVLGALNDTNFLAKARAQQGLPGSIQQDYSKADTTLPYLRRSSKQPKNQMKDHEMTMCNRGMVNFASPVPLSFNMGVQSPYAFSPAHMNAMMSYQQQAFSMQLQEQHMLFQQQMWQYYQINPFSNNFENANMVHASIPLTEERYSMESDK
Sbjct:    1 MDMEDRYTECKESDNPPACLQSQKGHARHFTQDICMVEDFQDGQDCRSVNLSDALVDDDSPKESYSTHAPSKKPVDDCHQIRRAPYKVTPGVICSRLLIPQSRVGLAIGRKGGRIREMSATTGARINVCIQNGIGRDEAYRLIVVTGSITAVCWAVDLLAQKTGLFNGYSNILSRPKEILNHKMGRTPVMDANSLIPEGKDGIGNPSPAEENIIDGATELKNNGDRKSDQIVPLPGIRLLVHSSMAGALLGRAGSTISFIRSQSNARIVLLNEEESAMEGGIVGERVLLIVGIPDYCRRAHLLVLGALNDTNFLAKARAQQGLPGSIQQDYSKADTTLPYLRRSSKQPKNQMKDHEMTMCNRGMVNFASPVPLSFNMGVQSPYAFSPAHMNAMMSYQQQAFSMQLQEQHMLFQQQMWQYYQINPFSNNFENANMVHASIPLTEERYSMESDK 452
[Close]
BLAST of EWM22755.1 vs. NCBI_GenBank
Match: gi|585104780|gb|EWM23629.1| (poly -binding protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 98.2117 bits (243), Expect = 2.458e-18
Identity = 80/245 (32.65%), Postives = 119/245 (48.57%), Query Frame = 0 
Query:   97 LLIPQSRVGLAIGRKGGRIREMSATTGARINVCIQNGIGRDEAYRLIVVTGSITAVCWAVDLLAQKTGLFNGYSNILSRPKEILNHKMGRTPVMDANSLIPEGKDGIGNPSPAEENIIDGATELKNNGDRKSDQIVPLPGIRLLVHSSMAGALLGRAGSTISFIRSQSNARIVLLNEEESAMEGGIVGERVLLIVGIPDYCRRAHLLVLGALNDTNFLAKARAQQGLPGSIQQDYS--KADTTLP 339
            LL+P SR+G  IGR G  I+ +   TG RI++       RD A+RL+ V+GS+  VC AV+L++++ GLF                                G+DG                           +  P PG+RL++ SS AG ++G+ G+TI+ IR+QS ARI +L++EESA EG +  ERV+L++G  + CR AH ++   L +    A A A    P   QQ  S  +A   +P
Sbjct:  208 LLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELISRQAGLFESQQG---------------------------GEDG---------------------------EDYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEACRLAHKMICSLLAN----AYASASSNSPSGHQQQPSVQQASVAVP 394
The following BLAST results are available for this feature:
BLAST of EWM22755.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103354|gb|EWM22755.1|0.000e+0100.00poly -binding protein 4 isoform c [Nannochloropsis... [more]
gi|585104780|gb|EWM23629.1|2.458e-1832.65poly -binding protein 3 [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7945rna7945Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications