EWM22762.1, cds7912 (CDS) Nannochloropsis gaditana

Overview
NameEWM22762.1
Unique Namecds7912
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:144435..144994 +
Alignment locationKK037247.1:145659..145764 +
Alignment locationKK037247.1:146006..146047 +
Alignment locationKK037247.1:146372..146410 +
Alignment locationKK037247.1:146571..146618 +
Alignment locationKK037247.1:146787..147035 +
Alignment locationKK037247.1:147199..147240 +
Alignment locationKK037247.1:147399..147602 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22762.1
Product16s ribosomal rna methyltransferase
Orig transcript idgnl|cribi|Naga_100297g5.7170.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:144435..144994 +
KK037247.1supercontigKK037247.1:145659..145764 +
KK037247.1supercontigKK037247.1:146006..146047 +
KK037247.1supercontigKK037247.1:146372..146410 +
KK037247.1supercontigKK037247.1:146571..146618 +
KK037247.1supercontigKK037247.1:146787..147035 +
KK037247.1supercontigKK037247.1:147199..147240 +
KK037247.1supercontigKK037247.1:147399..147602 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008168methyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR029028Alpha/beta_knot_MTases
IPR006700rRNA_ssu_MeTrfase-E
IPR029026tRNA_m1G_MTases_N
Homology
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|585103364|gb|EWM22762.1| (16s ribosomal rna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 873.233 bits (2255), Expect = 0.000e+0
Identity = 429/429 (100.00%), Postives = 429/429 (100.00%), Query Frame = 0
Query:    1 MSIFASQPFHASASAKKGHGRRRTCSNASHTVLSGSVFLVLLLVFLIAAAAGDGGQGLSWVCRKNPPLEGGRERIKNIVTGPRTCISMYQCNGRSAFLSSLSYSFVGSLCGKRNMPPRTASHRASFPHCGRSISRSIPMRLNRLLFEAEEINLTSRNPQDGRGEREESVIVRLGQDDARAQHVRKVGVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWEQSIGRIASPQDDSGAALEGSRSDIRDKNDKSLQ 429
            MSIFASQPFHASASAKKGHGRRRTCSNASHTVLSGSVFLVLLLVFLIAAAAGDGGQGLSWVCRKNPPLEGGRERIKNIVTGPRTCISMYQCNGRSAFLSSLSYSFVGSLCGKRNMPPRTASHRASFPHCGRSISRSIPMRLNRLLFEAEEINLTSRNPQDGRGEREESVIVRLGQDDARAQHVRKVGVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWEQSIGRIASPQDDSGAALEGSRSDIRDKNDKSLQ
Sbjct:    1 MSIFASQPFHASASAKKGHGRRRTCSNASHTVLSGSVFLVLLLVFLIAAAAGDGGQGLSWVCRKNPPLEGGRERIKNIVTGPRTCISMYQCNGRSAFLSSLSYSFVGSLCGKRNMPPRTASHRASFPHCGRSISRSIPMRLNRLLFEAEEINLTSRNPQDGRGEREESVIVRLGQDDARAQHVRKVGVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWEQSIGRIASPQDDSGAALEGSRSDIRDKNDKSLQ 429          
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|553190327|ref|XP_005855168.1| (16s ribosomal rna methyltransferase [Nannochloropsis gaditana CCMP526] >gi|422293892|gb|EKU21192.1| 16s ribosomal rna methyltransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 441.039 bits (1133), Expect = 5.832e-151
Identity = 250/282 (88.65%), Postives = 250/282 (88.65%), Query Frame = 0
Query:    1 MSIFASQPFHASASAKKGHGRRRTCSNASHTVLSGSVFLVLLLVFLIAAAAGDGGQGLSWVCRKNPPLEGGRERIKNIVTGPRTCISMYQCNGRSAFLSSLSYSFVGSLCGKRNMPPRTASHRASFPHCGRSISRSIPMRLNRLLFEAEEINLTSRNPQDGRGEREESVIVRLGQDDARAQHVRKV-----------------GVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLK 265
            MSIFASQPFHASASAKKGHGRRRTCSNASHTVLSGSVFLVLLLVFLIAAAAGDGGQGLSWVCRKNPPLEGGRERIKNIVTGPRTCISMYQCNGRSAFLSSLSYSFVGSLCGKRNMPPRTASHRASFPHCGRSISRSIPMRLNRLLFEAEEINLTSRNPQDGRGEREESVIVRLGQDDARAQHVRKV                  VDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKK              QALRELVVEGLSQAGDTIVPDIIIDRRLK
Sbjct:    1 MSIFASQPFHASASAKKGHGRRRTCSNASHTVLSGSVFLVLLLVFLIAAAAGDGGQGLSWVCRKNPPLEGGRERIKNIVTGPRTCISMYQCNGRSAFLSSLSYSFVGSLCGKRNMPPRTASHRASFPHCGRSISRSIPMRLNRLLFEAEEINLTSRNPQDGRGEREESVIVRLGQDDARAQHVRKVLRAKTGDEVRVGVLNGGRVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKK--------------QALRELVVEGLSQAGDTIVPDIIIDRRLK 268          

HSP 2 Score: 170.244 bits (430), Expect = 2.140e-45
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0
Query:  348 EEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWEQSIGRIASPQDDSGAALEGSRSDIRDKNDKSLQ 429
            +EPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWEQSIGRIASPQDDSGAALEGSRSDIRDKNDKSLQ
Sbjct:  268 KEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWEQSIGRIASPQDDSGAALEGSRSDIRDKNDKSLQ 349          
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|1210526954|dbj|GAX14281.1| (hypothetical protein FisN_1Hh477 [Fistulifera solaris])

HSP 1 Score: 159.073 bits (401), Expect = 1.024e-41
Identity = 81/200 (40.50%), Postives = 125/200 (62.50%), Query Frame = 0
Query:  188 VDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELF-REHGFQQITLGPRVLRTETAVPALLALAHD 386
            V ++LA+  PL++ R++P +  +GV  L++T A+KV K Y+GSHL R+P+ L E ++EGL Q+GDT +P + + + L +F+ D L+ L+P               RV++HP R + D      R R +++P+  P+            R+++A+GPE GWEEP E+E F  +HGFQQIT+G RVLR++ AV +LL LAHD
Sbjct:  124 VSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSGDTKLPQVTVVKNLSQFMDDTLDELFP----------LHSHARVIAHPQRVVKDRVIESVRMRSVTFPTDSPR------------RMVIAVGPEGGWEEPNEIERFVNQHGFQQITMGTRVLRSDCAVVSLLGLAHD 301          
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|397620002|gb|EJK65495.1| (hypothetical protein THAOC_13634 [Thalassiosira oceanica])

HSP 1 Score: 154.836 bits (390), Expect = 1.542e-39
Identity = 87/191 (45.55%), Postives = 124/191 (64.92%), Query Frame = 0
Query:  202 RIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQP-RLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHAL 391
            R++P +  LGV  L++T+A+KV K Y+GSHL R+P  LR L+VEGLSQ+GD  +P + + +RLK FL D+L+ L+P S         Q+  R+++HP R   D  G  TR            + +K     G P R+LLA+GPE GWEEPYEL++F++ GF++ITLG RVLRT+ AV +LLALA++   +L
Sbjct:  201 RLLPMVAQLGVENLILTNARKVPKDYFGSHLFRKPSVLRGLLVEGLSQSGDVRLPRVTVSKRLKIFLEDELDELFPRS---------QYE-RIIAHPQR--KDETGRMTRM-----------SDIKVNATDGSPRRILLAVGPEGGWEEPYELDMFQKLGFKRITLGTRVLRTDVAVVSLLALANEACSSL 368          
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|1210521295|dbj|GAX20043.1| (hypothetical protein FisN_1Lh477 [Fistulifera solaris])

HSP 1 Score: 153.68 bits (387), Expect = 2.206e-39
Identity = 80/200 (40.00%), Postives = 123/200 (61.50%), Query Frame = 0
Query:  188 VDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELF-REHGFQQITLGPRVLRTETAVPALLALAHD 386
            V ++LA+  PL++ R++P +  +GV  L++T A+KV K Y+GSHL R+P+ L E ++EGL Q+GDT +P + I + L +FL  K++ L+P               RV++HP R + D      R R +S+P+  P+            ++++A+GPE GWEEP E++ F  EH F QIT+G RVLR++ AV +LL LAHD
Sbjct:  146 VSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSGDTKLPKVTIVKSLSQFLDGKVDELFP----------LHSYARVIAHPQRVVEDRVIESVRMRSVSFPTDSPR------------KIVIAVGPEGGWEEPNEIDRFVNEHDFHQITMGTRVLRSDCAVVSLLGLAHD 323          
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|219112567|ref|XP_002178035.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410920|gb|EEC50849.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 153.295 bits (386), Expect = 2.977e-39
Identity = 82/199 (41.21%), Postives = 125/199 (62.81%), Query Frame = 0
Query:  188 VDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHD 386
            V ++LA+  PL++ R++P +  +GV  L++  A+KV K Y+GSHLLR P+ LRE ++EGL QAGD  +P + I R L+ FL+++++ ++P +             R ++HP R   D  G   + +Q+ +P             V   RL++A+GPE GWEEP EL+ FR+ GFQQIT+G RVLR++ AV +LL+LAHD
Sbjct:  152 VSLILALPRPLQLGRMLPMISQMGVNHLVLAQAQKVPKDYFGSHLLRNPEELREKLIEGLCQAGDVRLPQLHIVRNLRDFLTNEVDEIFPKN----------QYARAIAHPQRT-SDPMGSLKKMKQVEFP-------------VKSSRLVVAVGPEGGWEEPDELDRFRDCGFQQITMGARVLRSDCAVVSLLSLAHD 326          
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|1072228988|gb|OEU13723.1| (alpha/beta knot [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 149.443 bits (376), Expect = 1.160e-37
Identity = 85/224 (37.95%), Postives = 132/224 (58.93%), Query Frame = 0
Query:  173 LGQDDARAQHVRKVGVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRF-LSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFR-EHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQ 394
            +  D   +     + V ++LA+  PL++ RI+P +  +GV  L++TSAKKV K Y+GSHL ++P+ L E ++EGL QAGD  +P + + R  + F LS++ + L+P           +   RVLSHP R     E +  R  Q+ +P   P             R+++A+GPE GWEEPYEL++ + + GFQQITLG R LR++ AV  LL+LAH+  ++ D++
Sbjct:  140 IDNDSQSSPATDPINVSLILALPRPLQLGRILPMISQIGVDHLVLTSAKKVPKEYFGSHLFKKPELLTEKLIEGLCQAGDVRLPQLHLVRNFRNFLLSEEFDNLFPK----------ETYARVLSHPKRQSDLEEPL--RMSQVEFPKTSPS------------RIVVAVGPEGGWEEPYELDMLKNDCGFQQITLGSRTLRSDVAVCGLLSLAHEACYSNDKK 339          
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|919583024|ref|WP_052880786.1| (hypothetical protein [Kiritimatiella glycovorans] >gi|827038784|gb|AKJ63343.1| Ribosomal RNA small subunit methyltransferase E [Kiritimatiella glycovorans])

HSP 1 Score: 128.642 bits (322), Expect = 6.852e-31
Identity = 77/195 (39.49%), Postives = 117/195 (60.00%), Query Frame = 0
Query:  188 VDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLA 382
            VD+LLA+  P  ++R++  + A+GVGR+++T+A+KVE+ Y+ SH+L +   +R  +VEGL QAGDT VPD+ I R LK FL D+L+ L P S            +R+L+HP               +   P   P++ L+     G+ R+L A+GPE GW + YEL++  +H F  +T+GPR LR++TA  AL A
Sbjct:   77 VDLLLALPRPKILKRLLAQLAAVGVGRIMLTNAEKVERYYFDSHVL-DAAFIRARLVEGLQQAGDTRVPDVFIRRELKPFLEDELDALEPES------------VRLLAHP---------------RAGRP---PEDALRAADPRGERRVLAALGPEGGWTD-YELDMIGQHSFIPVTMGPRTLRSDTAAIALHA 239          
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|551607149|ref|XP_005784894.1| (hypothetical protein EMIHUDRAFT_230791 [Emiliania huxleyi CCMP1516] >gi|485638010|gb|EOD32465.1| hypothetical protein EMIHUDRAFT_230791 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 127.872 bits (320), Expect = 4.769e-30
Identity = 90/240 (37.50%), Postives = 133/240 (55.42%), Query Frame = 0
Query:  162 RGEREESVIVRL--GQDD-----------ARAQHVRKVGVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHL 388
            RG  +E+ +  L  G DD           +R +   +  +D+LLAM  PL+  R++P + +LGVG + +T+A K EKS++ SHLLRE QA ++ +    + AGDT VP +++DRRL+                       Q+  R+++HP R   D+  V      L+        G   + A   PR+LLA+GPE GW+EP ELEL REHGF+++TLG R LRT+ AV +LL++AH  L
Sbjct:   77 RGSSDEATVCWLPGGADDPPGLRLALGEPSRLRPAERPRIDLLLAMPRPLQFGRLLPMVASLGVGTVYVTAAAKTEKSFFSSHLLREDQAAQQQLRA--ALAGDTAVPRVVVDRRLRSL---------------LRDRLPQYGRRLVAHPRREGRDARTVGEALSGLASSQAAIDAGEGQDGAGSGPRVLLAVGPEGGWDEPAELELLREHGFEEVTLGSRTLRTDVAVVSLLSVAHASL 299          
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|1095342421|emb|SEU35518.1| (RNA methyltransferase, RsmE family [Stigmatella erecta])

HSP 1 Score: 125.176 bits (313), Expect = 1.600e-29
Identity = 81/208 (38.94%), Postives = 121/208 (58.17%), Query Frame = 0
Query:  185 KVGVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLE-VLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALL---ALAHDHL 388
            + GVD+LLA+  P  +++++P + +LGV R+++ +A +VEKSY+ S +L  P  ++EL+++GL QA DT +P++++  R + F+ D+LE VL P +            LR+L HP                   P+  P    +  TA   PR+LLAIGP+ GW  P+E  L   HGFQ  TLGPR+LR ETAVP LL   AL  D++
Sbjct:   74 RAGVDLLLAIPRPKALKKVLPAVASLGVDRVVLVNAARVEKSYFDSKVL-APDFIQELLLQGLEQARDTHLPEVLVRERFRPFVEDELEAVLGPRA------------LRLLPHP-------------------PAHQPLTATRVGTA---PRVLLAIGPDGGWV-PFEASLLEAHGFQPFTLGPRILRVETAVPVLLGQVALLRDNI 245          
The following BLAST results are available for this feature:
BLAST of EWM22762.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103364|gb|EWM22762.1|0.000e+0100.0016s ribosomal rna methyltransferase [Nannochlorops... [more]
gi|553190327|ref|XP_005855168.1|5.832e-15188.6516s ribosomal rna methyltransferase [Nannochlorops... [more]
gi|1210526954|dbj|GAX14281.1|1.024e-4140.50hypothetical protein FisN_1Hh477 [Fistulifera sola... [more]
gi|397620002|gb|EJK65495.1|1.542e-3945.55hypothetical protein THAOC_13634 [Thalassiosira oc... [more]
gi|1210521295|dbj|GAX20043.1|2.206e-3940.00hypothetical protein FisN_1Lh477 [Fistulifera sola... [more]
gi|219112567|ref|XP_002178035.1|2.977e-3941.21predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072228988|gb|OEU13723.1|1.160e-3737.95alpha/beta knot [Fragilariopsis cylindrus CCMP1102... [more]
gi|919583024|ref|WP_052880786.1|6.852e-3139.49hypothetical protein [Kiritimatiella glycovorans] ... [more]
gi|551607149|ref|XP_005784894.1|4.769e-3037.50hypothetical protein EMIHUDRAFT_230791 [Emiliania ... [more]
gi|1095342421|emb|SEU35518.1|1.600e-2938.94RNA methyltransferase, RsmE family [Stigmatella er... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7934rna7934Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications