EWM22762.1, cds7912 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|585103364|gb|EWM22762.1| (16s ribosomal rna methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 873.233 bits (2255), Expect = 0.000e+0 Identity = 429/429 (100.00%), Postives = 429/429 (100.00%), Query Frame = 0 Query: 1 MSIFASQPFHASASAKKGHGRRRTCSNASHTVLSGSVFLVLLLVFLIAAAAGDGGQGLSWVCRKNPPLEGGRERIKNIVTGPRTCISMYQCNGRSAFLSSLSYSFVGSLCGKRNMPPRTASHRASFPHCGRSISRSIPMRLNRLLFEAEEINLTSRNPQDGRGEREESVIVRLGQDDARAQHVRKVGVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWEQSIGRIASPQDDSGAALEGSRSDIRDKNDKSLQ 429 MSIFASQPFHASASAKKGHGRRRTCSNASHTVLSGSVFLVLLLVFLIAAAAGDGGQGLSWVCRKNPPLEGGRERIKNIVTGPRTCISMYQCNGRSAFLSSLSYSFVGSLCGKRNMPPRTASHRASFPHCGRSISRSIPMRLNRLLFEAEEINLTSRNPQDGRGEREESVIVRLGQDDARAQHVRKVGVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWEQSIGRIASPQDDSGAALEGSRSDIRDKNDKSLQ Sbjct: 1 MSIFASQPFHASASAKKGHGRRRTCSNASHTVLSGSVFLVLLLVFLIAAAAGDGGQGLSWVCRKNPPLEGGRERIKNIVTGPRTCISMYQCNGRSAFLSSLSYSFVGSLCGKRNMPPRTASHRASFPHCGRSISRSIPMRLNRLLFEAEEINLTSRNPQDGRGEREESVIVRLGQDDARAQHVRKVGVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWEQSIGRIASPQDDSGAALEGSRSDIRDKNDKSLQ 429
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|553190327|ref|XP_005855168.1| (16s ribosomal rna methyltransferase [Nannochloropsis gaditana CCMP526] >gi|422293892|gb|EKU21192.1| 16s ribosomal rna methyltransferase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 441.039 bits (1133), Expect = 5.832e-151 Identity = 250/282 (88.65%), Postives = 250/282 (88.65%), Query Frame = 0 Query: 1 MSIFASQPFHASASAKKGHGRRRTCSNASHTVLSGSVFLVLLLVFLIAAAAGDGGQGLSWVCRKNPPLEGGRERIKNIVTGPRTCISMYQCNGRSAFLSSLSYSFVGSLCGKRNMPPRTASHRASFPHCGRSISRSIPMRLNRLLFEAEEINLTSRNPQDGRGEREESVIVRLGQDDARAQHVRKV-----------------GVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLK 265 MSIFASQPFHASASAKKGHGRRRTCSNASHTVLSGSVFLVLLLVFLIAAAAGDGGQGLSWVCRKNPPLEGGRERIKNIVTGPRTCISMYQCNGRSAFLSSLSYSFVGSLCGKRNMPPRTASHRASFPHCGRSISRSIPMRLNRLLFEAEEINLTSRNPQDGRGEREESVIVRLGQDDARAQHVRKV VDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKK QALRELVVEGLSQAGDTIVPDIIIDRRLK Sbjct: 1 MSIFASQPFHASASAKKGHGRRRTCSNASHTVLSGSVFLVLLLVFLIAAAAGDGGQGLSWVCRKNPPLEGGRERIKNIVTGPRTCISMYQCNGRSAFLSSLSYSFVGSLCGKRNMPPRTASHRASFPHCGRSISRSIPMRLNRLLFEAEEINLTSRNPQDGRGEREESVIVRLGQDDARAQHVRKVLRAKTGDEVRVGVLNGGRVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKK--------------QALRELVVEGLSQAGDTIVPDIIIDRRLK 268 HSP 2 Score: 170.244 bits (430), Expect = 2.140e-45 Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0 Query: 348 EEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWEQSIGRIASPQDDSGAALEGSRSDIRDKNDKSLQ 429 +EPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWEQSIGRIASPQDDSGAALEGSRSDIRDKNDKSLQ Sbjct: 268 KEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQWEQSIGRIASPQDDSGAALEGSRSDIRDKNDKSLQ 349
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|1210526954|dbj|GAX14281.1| (hypothetical protein FisN_1Hh477 [Fistulifera solaris]) HSP 1 Score: 159.073 bits (401), Expect = 1.024e-41 Identity = 81/200 (40.50%), Postives = 125/200 (62.50%), Query Frame = 0 Query: 188 VDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELF-REHGFQQITLGPRVLRTETAVPALLALAHD 386 V ++LA+ PL++ R++P + +GV L++T A+KV K Y+GSHL R+P+ L E ++EGL Q+GDT +P + + + L +F+ D L+ L+P RV++HP R + D R R +++P+ P+ R+++A+GPE GWEEP E+E F +HGFQQIT+G RVLR++ AV +LL LAHD Sbjct: 124 VSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSGDTKLPQVTVVKNLSQFMDDTLDELFP----------LHSHARVIAHPQRVVKDRVIESVRMRSVTFPTDSPR------------RMVIAVGPEGGWEEPNEIERFVNQHGFQQITMGTRVLRSDCAVVSLLGLAHD 301
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|397620002|gb|EJK65495.1| (hypothetical protein THAOC_13634 [Thalassiosira oceanica]) HSP 1 Score: 154.836 bits (390), Expect = 1.542e-39 Identity = 87/191 (45.55%), Postives = 124/191 (64.92%), Query Frame = 0 Query: 202 RIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQP-RLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHLHAL 391 R++P + LGV L++T+A+KV K Y+GSHL R+P LR L+VEGLSQ+GD +P + + +RLK FL D+L+ L+P S Q+ R+++HP R D G TR + +K G P R+LLA+GPE GWEEPYEL++F++ GF++ITLG RVLRT+ AV +LLALA++ +L Sbjct: 201 RLLPMVAQLGVENLILTNARKVPKDYFGSHLFRKPSVLRGLLVEGLSQSGDVRLPRVTVSKRLKIFLEDELDELFPRS---------QYE-RIIAHPQR--KDETGRMTRM-----------SDIKVNATDGSPRRILLAVGPEGGWEEPYELDMFQKLGFKRITLGTRVLRTDVAVVSLLALANEACSSL 368
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|1210521295|dbj|GAX20043.1| (hypothetical protein FisN_1Lh477 [Fistulifera solaris]) HSP 1 Score: 153.68 bits (387), Expect = 2.206e-39 Identity = 80/200 (40.00%), Postives = 123/200 (61.50%), Query Frame = 0 Query: 188 VDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELF-REHGFQQITLGPRVLRTETAVPALLALAHD 386 V ++LA+ PL++ R++P + +GV L++T A+KV K Y+GSHL R+P+ L E ++EGL Q+GDT +P + I + L +FL K++ L+P RV++HP R + D R R +S+P+ P+ ++++A+GPE GWEEP E++ F EH F QIT+G RVLR++ AV +LL LAHD Sbjct: 146 VSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSGDTKLPKVTIVKSLSQFLDGKVDELFP----------LHSYARVIAHPQRVVEDRVIESVRMRSVSFPTDSPR------------KIVIAVGPEGGWEEPNEIDRFVNEHDFHQITMGTRVLRSDCAVVSLLGLAHD 323
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|219112567|ref|XP_002178035.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410920|gb|EEC50849.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 153.295 bits (386), Expect = 2.977e-39 Identity = 82/199 (41.21%), Postives = 125/199 (62.81%), Query Frame = 0 Query: 188 VDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHD 386 V ++LA+ PL++ R++P + +GV L++ A+KV K Y+GSHLLR P+ LRE ++EGL QAGD +P + I R L+ FL+++++ ++P + R ++HP R D G + +Q+ +P V RL++A+GPE GWEEP EL+ FR+ GFQQIT+G RVLR++ AV +LL+LAHD Sbjct: 152 VSLILALPRPLQLGRMLPMISQMGVNHLVLAQAQKVPKDYFGSHLLRNPEELREKLIEGLCQAGDVRLPQLHIVRNLRDFLTNEVDEIFPKN----------QYARAIAHPQRT-SDPMGSLKKMKQVEFP-------------VKSSRLVVAVGPEGGWEEPDELDRFRDCGFQQITMGARVLRSDCAVVSLLSLAHD 326
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|1072228988|gb|OEU13723.1| (alpha/beta knot [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 149.443 bits (376), Expect = 1.160e-37 Identity = 85/224 (37.95%), Postives = 132/224 (58.93%), Query Frame = 0 Query: 173 LGQDDARAQHVRKVGVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRF-LSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFR-EHGFQQITLGPRVLRTETAVPALLALAHDHLHALDEQ 394 + D + + V ++LA+ PL++ RI+P + +GV L++TSAKKV K Y+GSHL ++P+ L E ++EGL QAGD +P + + R + F LS++ + L+P + RVLSHP R E + R Q+ +P P R+++A+GPE GWEEPYEL++ + + GFQQITLG R LR++ AV LL+LAH+ ++ D++ Sbjct: 140 IDNDSQSSPATDPINVSLILALPRPLQLGRILPMISQIGVDHLVLTSAKKVPKEYFGSHLFKKPELLTEKLIEGLCQAGDVRLPQLHLVRNFRNFLLSEEFDNLFPK----------ETYARVLSHPKRQSDLEEPL--RMSQVEFPKTSPS------------RIVVAVGPEGGWEEPYELDMLKNDCGFQQITLGSRTLRSDVAVCGLLSLAHEACYSNDKK 339
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|919583024|ref|WP_052880786.1| (hypothetical protein [Kiritimatiella glycovorans] >gi|827038784|gb|AKJ63343.1| Ribosomal RNA small subunit methyltransferase E [Kiritimatiella glycovorans]) HSP 1 Score: 128.642 bits (322), Expect = 6.852e-31 Identity = 77/195 (39.49%), Postives = 117/195 (60.00%), Query Frame = 0 Query: 188 VDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLA 382 VD+LLA+ P ++R++ + A+GVGR+++T+A+KVE+ Y+ SH+L + +R +VEGL QAGDT VPD+ I R LK FL D+L+ L P S +R+L+HP + P P++ L+ G+ R+L A+GPE GW + YEL++ +H F +T+GPR LR++TA AL A Sbjct: 77 VDLLLALPRPKILKRLLAQLAAVGVGRIMLTNAEKVERYYFDSHVL-DAAFIRARLVEGLQQAGDTRVPDVFIRRELKPFLEDELDALEPES------------VRLLAHP---------------RAGRP---PEDALRAADPRGERRVLAALGPEGGWTD-YELDMIGQHSFIPVTMGPRTLRSDTAAIALHA 239
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|551607149|ref|XP_005784894.1| (hypothetical protein EMIHUDRAFT_230791 [Emiliania huxleyi CCMP1516] >gi|485638010|gb|EOD32465.1| hypothetical protein EMIHUDRAFT_230791 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 127.872 bits (320), Expect = 4.769e-30 Identity = 90/240 (37.50%), Postives = 133/240 (55.42%), Query Frame = 0 Query: 162 RGEREESVIVRL--GQDD-----------ARAQHVRKVGVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLEVLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALLALAHDHL 388 RG +E+ + L G DD +R + + +D+LLAM PL+ R++P + +LGVG + +T+A K EKS++ SHLLRE QA ++ + + AGDT VP +++DRRL+ Q+ R+++HP R D+ V L+ G + A PR+LLA+GPE GW+EP ELEL REHGF+++TLG R LRT+ AV +LL++AH L Sbjct: 77 RGSSDEATVCWLPGGADDPPGLRLALGEPSRLRPAERPRIDLLLAMPRPLQFGRLLPMVASLGVGTVYVTAAAKTEKSFFSSHLLREDQAAQQQLRA--ALAGDTAVPRVVVDRRLRSL---------------LRDRLPQYGRRLVAHPRREGRDARTVGEALSGLASSQAAIDAGEGQDGAGSGPRVLLAVGPEGGWDEPAELELLREHGFEEVTLGSRTLRTDVAVVSLLSVAHASL 299
BLAST of EWM22762.1 vs. NCBI_GenBank
Match: gi|1095342421|emb|SEU35518.1| (RNA methyltransferase, RsmE family [Stigmatella erecta]) HSP 1 Score: 125.176 bits (313), Expect = 1.600e-29 Identity = 81/208 (38.94%), Postives = 121/208 (58.17%), Query Frame = 0 Query: 185 KVGVDVLLAMQAPLRMERIIPHMVALGVGRLLITSAKKVEKSYWGSHLLREPQALRELVVEGLSQAGDTIVPDIIIDRRLKRFLSDKLE-VLYPSSPSPSASSSFQHTLRVLSHPFRALHDSEGVDTRFRQLSWPSPVPKNGLKGETAVGQPRLLLAIGPESGWEEPYELELFREHGFQQITLGPRVLRTETAVPALL---ALAHDHL 388 + GVD+LLA+ P +++++P + +LGV R+++ +A +VEKSY+ S +L P ++EL+++GL QA DT +P++++ R + F+ D+LE VL P + LR+L HP P+ P + TA PR+LLAIGP+ GW P+E L HGFQ TLGPR+LR ETAVP LL AL D++ Sbjct: 74 RAGVDLLLAIPRPKALKKVLPAVASLGVDRVVLVNAARVEKSYFDSKVL-APDFIQELLLQGLEQARDTHLPEVLVRERFRPFVEDELEAVLGPRA------------LRLLPHP-------------------PAHQPLTATRVGTA---PRVLLAIGPDGGWV-PFEASLLEAHGFQPFTLGPRILRVETAVPVLLGQVALLRDNI 245 The following BLAST results are available for this feature:
BLAST of EWM22762.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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