EWM22806.1, cds7870 (CDS) Nannochloropsis gaditana

Overview
NameEWM22806.1
Unique Namecds7870
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:47049..47171 -
Alignment locationKK037247.1:46854..46969 -
Alignment locationKK037247.1:46503..46650 -
Alignment locationKK037247.1:45983..46327 -
Alignment locationKK037247.1:45346..45648 -
Alignment locationKK037247.1:45013..45246 -
Alignment locationKK037247.1:44625..44881 -
Alignment locationKK037247.1:44171..44405 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22806.1
Productintraflagellar transport protein 52
Orig transcript idgnl|cribi|Naga_100178g7.3211.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:47049..47171 -
KK037247.1supercontigKK037247.1:46854..46969 -
KK037247.1supercontigKK037247.1:46503..46650 -
KK037247.1supercontigKK037247.1:45983..46327 -
KK037247.1supercontigKK037247.1:45346..45648 -
KK037247.1supercontigKK037247.1:45013..45246 -
KK037247.1supercontigKK037247.1:44625..44881 -
KK037247.1supercontigKK037247.1:44171..44405 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Homology
BLAST of EWM22806.1 vs. NCBI_GenBank
Match: gi|585103429|gb|EWM22806.1| (intraflagellar transport protein 52 [Nannochloropsis gaditana])

HSP 1 Score: 1182.55 bits (3058), Expect = 0.000e+0
Identity = 586/586 (100.00%), Postives = 586/586 (100.00%), Query Frame = 0
Query:    1 MHSEQSGHSSQSNASSGNYSSNRKLDGCNVARLTYQPHPGQAPLEERHNHVVFNAVKGENYQNMKRLFRRLRRAGLKVTINKHSDVPSILVREGQHVGIRPDASHGAPALSLPSLAVFACPQSAFTTHEEQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLSSLPETEDDQAGKDERQEEEGDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGEDGGEGKGAGRRGEAGKEEEEWLNGGERGKGRGGGGAGGGGRRGGRLVVLGAADMWTDAWLDQEDNGWLADVIFRWLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLFCGDARPEQERAHDPALPPSLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPPPPPTLEQFDLDQVFASPRTQLARLFHKCASSRLEGAKEGSREDLSYFVREAAEVRGGDKERNWRKS 586
            MHSEQSGHSSQSNASSGNYSSNRKLDGCNVARLTYQPHPGQAPLEERHNHVVFNAVKGENYQNMKRLFRRLRRAGLKVTINKHSDVPSILVREGQHVGIRPDASHGAPALSLPSLAVFACPQSAFTTHEEQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLSSLPETEDDQAGKDERQEEEGDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGEDGGEGKGAGRRGEAGKEEEEWLNGGERGKGRGGGGAGGGGRRGGRLVVLGAADMWTDAWLDQEDNGWLADVIFRWLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLFCGDARPEQERAHDPALPPSLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPPPPPTLEQFDLDQVFASPRTQLARLFHKCASSRLEGAKEGSREDLSYFVREAAEVRGGDKERNWRKS
Sbjct:    1 MHSEQSGHSSQSNASSGNYSSNRKLDGCNVARLTYQPHPGQAPLEERHNHVVFNAVKGENYQNMKRLFRRLRRAGLKVTINKHSDVPSILVREGQHVGIRPDASHGAPALSLPSLAVFACPQSAFTTHEEQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLSSLPETEDDQAGKDERQEEEGDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGEDGGEGKGAGRRGEAGKEEEEWLNGGERGKGRGGGGAGGGGRRGGRLVVLGAADMWTDAWLDQEDNGWLADVIFRWLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLFCGDARPEQERAHDPALPPSLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPPPPPTLEQFDLDQVFASPRTQLARLFHKCASSRLEGAKEGSREDLSYFVREAAEVRGGDKERNWRKS 586          
BLAST of EWM22806.1 vs. NCBI_GenBank
Match: gi|553183511|ref|XP_005853911.1| (intraflagellar transport protein 52, partial [Nannochloropsis gaditana CCMP526] >gi|422295147|gb|EKU22446.1| intraflagellar transport protein 52, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 625.935 bits (1613), Expect = 0.000e+0
Identity = 399/485 (82.27%), Postives = 401/485 (82.68%), Query Frame = 0
Query:  130 EQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLSSLPETEDDQAGKDERQEEEGDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGEDGGEGKGAGRRGEAGKEEEEWLN-GGERGKGRGGGGAGGGGRRGGRLVVLGAADMWTDAWLDQEDNGWLADVIFR---------------------------------WLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLFCGDARPEQERAHDPALPP----SLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPPPPPTLEQFDLDQVFASPRTQLARLFHKCASSRLEGAKEGSREDLSYFVREAAEVRG 576
            EQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLSSLPETEDDQAGKDERQEEE DPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGEDGGEGKGAGRR EAGKEEE+ LN G       GGG  GGGGRRGGRLVVLGA DMWTDAWLDQEDNGWLADVIFR                                 WLLHREPDAESSAPPSNLGQASFSHDRSPSRL QLLFCGDARPEQERAHDPALPP    SLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFV                               FASPRTQLARLFHKCASSRLEGAKEGSREDLSYFVREAAE+ G
Sbjct:    1 EQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLSSLPETEDDQAGKDERQEEEKDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGEDGGEGKGAGRREEAGKEEEKRLNEGERGKGRGGGGAGGGGGRRGGRLVVLGAVDMWTDAWLDQEDNGWLADVIFRVGARKAPEGEGEGKERGGEGWHHSRPLVLPRSQWLLHREPDAESSAPPSNLGQASFSHDRSPSRLAQLLFCGDARPEQERAHDPALPPALPPSLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFV-------------------------------FASPRTQLARLFHKCASSRLEGAKEGSREDLSYFVREAAEIVG 454          
BLAST of EWM22806.1 vs. NCBI_GenBank
Match: gi|953494892|emb|CEG43533.1| (intraflagellar transport protein 52 homolog [Plasmopara halstedii])

HSP 1 Score: 176.407 bits (446), Expect = 5.508e-45
Identity = 161/551 (29.22%), Postives = 239/551 (43.38%), Query Frame = 0
Query:   47 RHNHVVFNAVKGENY---QNMKRLFRRLRRAGLKVTINKHSDVPSILVREGQHVGIRPDASHGAPALSLPSLAVFACPQSAFTTHEEQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLS-----------LSSLPETEDD-QAGKDERQE------EEGDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGEDGGEGKGAGRRGEAGKEEEEWLNGGERGKGRGGGGAGGGGRRGGRLVVLGAADMWTDAWLDQEDNGWLADVIFRWLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLFCGDARPEQERAHDPALPPSLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPPPPPTLEQFDLDQVFASPRTQLARLFHKCASSRLEGAKEGSREDLSYFVREAAEVRG 576
            + + V+F+A K E +     +K+L RRL+    +V +NK  D+    +++                    ++ VFA  +  F++ E   L  FL   G S+LL+L EG G  Q  +       LN WL+ +G+  + DAV+R   H ++ HPKEV +S            + L   +D   +G+D +        E+   G SFVYPYG +L+V  PA  LLSSG  SYP +RPV AAW+ R                                      G      + GRL+V G+   + D W+D+E+N  L ++IFRWLL  +          NL                              H  A  P L   +  P  + L+ +LR C+Q     + +   D   L                        +  L+     +L+PE +  +H LG++ E PL  + P+F CP PPL+ AVFPP+   PPPP L+QFDLD+ FAS   +LA+L +KC           S EDL Y+VRE+A++ G
Sbjct:   12 KSSTVLFDASKKEQFYPASGLKKLARRLKPL-CRVDVNK-DDLSRDRIKDA-------------------NVLVFAGVRERFSSTEFATLKDFL-SSGGSILLMLGEG-GEQQFDTN------LNGWLKDFGIFVNPDAVIRTVYH-KYHHPKEVLVSRGVVNRELTRMANELFSRKDVLMSGRDLKVTGSDGAPEKDQKGLSFVYPYGATLNVKKPAATLLSSGSVSYPVNRPVAAAWQER--------------------------------------GVAAPASKSGRLIVFGSTQCFVDEWIDKEENAKLQEIIFRWLLKDKT--------INLN-----------------------------HQDAEDPDLNEYVRLPDTQALSDRLRSCMQ----ESEELPKDFTRLF-----------------------DDSLFKF-DTSLIPEAVNLYHDLGVKHE-PLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASETLRLAQLTNKC-----------SDEDLEYYVRESADILG 417          
BLAST of EWM22806.1 vs. NCBI_GenBank
Match: gi|646717406|gb|KDR20281.1| (Intraflagellar transport protein 52-like protein [Zootermopsis nevadensis])

HSP 1 Score: 171.785 bits (434), Expect = 1.030e-43
Identity = 145/540 (26.85%), Postives = 224/540 (41.48%), Query Frame = 0
Query:   44 LEERHNHVVFNAVKGENY---QNMKRLFRRLRRAGLKVTINKHSDVPSILVREGQHVGIRPDASHGAPALSLPSLAVFACPQSAFTTHEEQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLSSLPETEDDQAGK---DERQEEEGDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGEDGGEGKGAGRRGEAGKEEEEWLNGGERGKGRGGGGAGGGGRRGGRLVVLGAADMWTDAWLDQEDNGWLADVIFRWLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLFCGDARPEQERAHDPALPPSLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPPPPPTLEQFDLDQVFASPRTQLARLFHKCASSRLEGAKEGSRE-DLSYFVREAAEVRG 576
            ++E+ N ++FN+ K E +   +N K L R+L+    KV  NK                I  D   G     +P       P+  FT  E  +L ++L   G ++L+L+ EG        E+   + +N  L+ +G+  + D V+R   +  F HPKE  ++   L       +GK    +  +        FVYPYG +L+VA PA  +LS+G  ++P +RPV A +                                              G  GG+L VLG+  +++D ++D+EDN  + DV+FR+L                                     D +  Q  A DP     +   +  P    LA++ R CLQ  +   P  +  L N                            L+++    + P  +  +H L ++ E PLR + P+F  P PPL+ AVFPPSF   PPP LE FDLD+ F+S ++ LA+L +KC    L G   G+ E DL YF+RE  +V G
Sbjct:   11 VKEKGNTILFNSSKNELFKISENYKTLHRKLK-GSWKVLTNKDD--------------ISSDVLSGVTLFVIPG------PREKFTESEFNSLKKYL-DSGGNILILVGEG-------GEKNFQTNVNFLLEEYGIMINTDCVVRTHYYKYF-HPKECLVANGILNRAIAVVSGKFSGSDHYDHNISQTLKFVYPYGATLNVARPAVAVLSTGSVAFPLNRPVCAFYTHTNTT---------------------------------------SGSPGGKLAVLGSVHIFSDKYIDKEDNDIVRDVLFRFLT----------------------------------SSDIKLNQIDADDP----EITDYIMVPDTARLAEKPRVCLQESVDEIPTDYTKLFN--------------------------QRLFSINTGCV-PAAIQAYHELNVKHE-PLRLITPQFETPLPPLQAAVFPPSFRELPPPNLELFDLDEAFSSEKSHLAQLANKC----LSGGDIGNDEADLEYFIRECGQVLG 411          
BLAST of EWM22806.1 vs. NCBI_GenBank
Match: gi|1197305583|ref|XP_021122604.1| (intraflagellar transport protein 52 homolog [Anas platyrhynchos])

HSP 1 Score: 172.17 bits (435), Expect = 1.044e-43
Identity = 134/476 (28.15%), Postives = 216/476 (45.38%), Query Frame = 0
Query:  115 LAVFACPQSAFTTHEEQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLSSLPETEDDQAGKD--ERQEEEGD----PGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAW--------EGRAEGEDGGEGKGAGRRGEAGKEEEEWLNGGERGKGRGGGGAGGGGRRGGRLVVLGAADMWTDAWLDQEDNGWLADVIFRWLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLFCGDARPEQERAHDPALPPSLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPPPPPTLEQFDLDQVFASPRTQLARLFHKCASSRLEGAKEGSREDLSYFVREAAEVRG 576
            L + A P+  F+  E   L +FL  +G ++L++L EG G ++ G+       +N  L+ +G+  ++DAV+R   + ++ HPKE  +S   L     + AGK   E  +E+G      G +FVYP+G +L+V  PA  +LS+G   +P +RP+LA +        + + E E    G  +GR  +  + + + L   +R              +GGR+  LG+  M++D +LD+E+NG + DV+F+WL                                     D    Q    D    P +      P    L++QLR CLQ                    DE  R+  +   K+         LY L   T LP V+  +  L ++ E PL+ + P F  P P L+ AVFPP+F   PPP LE FDLD+ F+S +T+LA + +KC             +DL +++R+  ++ G
Sbjct:   32 LWITAGPREKFSAAEFLVLKKFL-EDGGAILVMLREG-GESRSGTN------INFLLEEYGIVFNNDAVVRNVYY-KYHHPKEALISDGVLNRGISEAAGKTALETTDEDGSIRNLQGLTFVYPFGATLNVMKPAVAILSTGSVCFPLNRPILAFYQHEFAEVVDKKVEDEARDRGSLSGRAEKLVRRKTKSLGAKKRYSKEQQQKVKEWKSKGGRMAALGSCHMFSDQYLDKEENGKIMDVLFQWLT----------------------------------TSDVHLNQMDMED----PEISDYTMLPDAAALSEQLRVCLQ------------------EGDENPRDFTKLFDKS---------LYQL-DTTALPAVIKAYEQLNVKHE-PLQLIQPLFETPLPALQPAVFPPAFRELPPPPLELFDLDETFSSEKTRLAEITNKCTD-----------DDLEFYIRKCGDILG 420          
BLAST of EWM22806.1 vs. NCBI_GenBank
Match: gi|301090731|ref|XP_002895569.1| (Intraflagellar Transport Protein 52 [Phytophthora infestans T30-4] >gi|262097808|gb|EEY55860.1| Intraflagellar Transport Protein 52 [Phytophthora infestans T30-4])

HSP 1 Score: 172.555 bits (436), Expect = 1.469e-43
Identity = 161/547 (29.43%), Postives = 242/547 (44.24%), Query Frame = 0
Query:   51 VVFNAVKGENY---QNMKRLFRRLRRAGLKVTINKHSDVPSILVREGQHVGIRPDASHGAPALSLPSLAVFACPQSAFTTHEEQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLS-----------LSSLPETEDD-QAGKDER------QEEEGDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGEDGGEGKGAGRRGEAGKEEEEWLNGGERGKGRGGGGAGGGGRRGGRLVVLGAADMWTDAWLDQEDNGWLADVIFRWLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLFCGDARPEQERAHDPALPPSLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPPPPPTLEQFDLDQVFASPRTQLARLFHKCASSRLEGAKEGSREDLSYFVREAAEVRG 576
            V+F+A K E +     +K+L R+L+    +V +NK  D+    +++                    S+ VFA  +  F++ E   L  FL   G S+LL+L EG        E+   + LN WL+ +G+  + DAV+R   H ++ HPKEV +S           ++ L   +D   AG++ +        E+   G +FVYPYG +L+V  PA  LLSSG  SYP +RPV+AAW+                                       GG  G   + GRL+V G+A  + D W+D+E+N  L ++IFRWLL                      D+S S                  H  A  P L   +  P  + L+ +LR C+Q +    P+   D   L                        +  L+     +L+PE +  +  LG++ E PL  + P+F CP PPL+ AVFPP+   PPPP L+QFDLD+ FAS   +LA+L +KC           S +DL Y+VRE+A++ G
Sbjct:   18 VLFDASKKEQFYPTSGLKKLARKLKPL-CRVDVNK-DDLSRDRIKDA-------------------SVLVFAGVRERFSSTEFATLKDFL-NSGGSILLMLGEG-------GEQTFDTNLNGWLKDFGIFVNPDAVIRTVYH-KYHHPKEVLISSGVVNRELARMVNVLYGRKDLLVAGRESKPLGPGGALEKDQKGLTFVYPYGATLTVKKPAAPLLSSGFISYPVNRPVVAAWQE--------------------------------------GGVAGPASKSGRLIVFGSAQCFVDEWIDKEENAKLQEIIFRWLLK---------------------DKSISL----------------NHQDAEDPDLNEYVRLPDTQALSDRLRSCMQ-ESEDLPK---DFTRLF-----------------------DDSLFKF-DTSLIPEAVNLYRELGVKHE-PLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASESLRLAQLTNKC-----------SDDDLEYYVRESADILG 419          
BLAST of EWM22806.1 vs. NCBI_GenBank
Match: gi|676386317|ref|XP_009036437.1| (hypothetical protein AURANDRAFT_2280, partial [Aureococcus anophagefferens] >gi|323452649|gb|EGB08522.1| hypothetical protein AURANDRAFT_2280, partial [Aureococcus anophagefferens])

HSP 1 Score: 171.785 bits (434), Expect = 1.527e-43
Identity = 168/554 (30.32%), Postives = 234/554 (42.24%), Query Frame = 0
Query:   51 VVFNAVKGENYQ---NMKRLFRRLRRAGLKVTINKHSDVPSILVREGQHVGIRPDASHGAPALSLPSLAVFACPQSAFTTHEEQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLS-------LSSLPETEDDQAGKDER------QEEEGDP------GFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGEDGGEGKGAGRRGEAGKEEEEWLNGGERGKGRGGGGAGGGGRRGGRLVVLGAADMWTDAWLDQEDNGWLADVIFRWLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLFCGDARPEQERAHDPALPPSLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNT-LLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPPPPPTLEQFDLDQVFASPRTQLARLFHKCA---SSRLEG-AKEGSREDLSYFVREAAEVRGG 577
            +  +A K E +      K+LFRRLR +  K   NK    P +L                        + V   P+  FT  E + +  F+   G S+L+L SEG G  + G        +N  L+ +GM A  D+VLR   + ++ HPKEVF+S       L++        A K  R      +E EG        G SFVYP G +LSV  PA+ +LSSG  SYP HR V AAWEG                             GER + R             R+V  GA +M++D WLD+E+NG L D++FRWL     DAE+ +   + G  + ++ R                                    P +  LA +LR CLQ                    DE  R   R    A             R +T ++PEV+A +  L ++ E  L  + P F  P PPL+ A FPP+   PP P L+QFDLD+ FAS R +LA+L +KC     ++ +G A     +DL Y+VREA E+ G 
Sbjct:    4 ICIDASKRETHHAGNGFKKLFRRLRSSNYKPISNKEDLTPQLL--------------------GTVDVLVVGAPRERFTADELRDVKEFV-ANGGSLLVLSSEG-GEPKLGCN------VNELLEGYGMSAQPDSVLRTVYY-KYLHPKEVFVSHGVLQPELATHKHLSHGNARKHRRGGVAAAKEPEGGHDAAQGGGLSFVYPRGATLSVQRPARAVLSSGAISYPIHRTVCAAWEGSHP-------------------------NGERNRPR------------PRVVAAGAVEMFSDEWLDKEENGTLCDLLFRWLAR---DAEAPSLHHHAGDDAAAYAR-----------------------------------VPDIEALASRLRACLQEN------------------DELPRNFTRLFNDA-----------LFRFDTDVIPEVVALYEQLHVKHE-ALSLIPPSFEYPLPPLQPATFPPALREPPSPPLDQFDLDEHFASKRERLAQLTNKCIPGGMTKKDGDAALAEPDDLEYYVREAGEIVGA 423          
BLAST of EWM22806.1 vs. NCBI_GenBank
Match: gi|960964088|ref|XP_014796793.1| (PREDICTED: intraflagellar transport protein 52 homolog isoform X1 [Calidris pugnax])

HSP 1 Score: 170.244 bits (430), Expect = 6.389e-43
Identity = 150/551 (27.22%), Postives = 239/551 (43.38%), Query Frame = 0
Query:   49 NHVVFNAVKGENYQ---NMKRLFRRLRRAGLKVTINKHSDVPSILVREGQHVGIRPDASHGAPALSLPSLAVFACPQSAFTTHEEQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLS-------------LSSLPETEDDQAGKDERQEEEGDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAW------EGR-AEGEDGGEGKGAGRRGEAGKEEEEWLNGGERGKGRGGGGAGGGGRRGGRLVVLGAADMWTDAWLDQEDNGWLADVIFRWLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLFCGDARPEQERAHDPALPPSLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPPPPPTLEQFDLDQVFASPRTQLARLFHKCASSRLEGAKEGSREDLSYFVREAAEVRG 576
            N +VFNA KGE +    N K L +RLR    K+   K        +   +  G++              L + A P+  F+  E   L +FL  +G ++L++L EG G  + G+       +N  L+ +G+  ++DAV+R   + ++ HPKE  +S              + L  T++D +G+D +         +FVYP+G +L+V  PA  +LS+G   +P +RP+LA +      EGR  E E    G  + R  + G+ +   L   ER              +GG++  LG++ M++D +LD+E+NG + DV+F+WL                                     D    Q    D    P +      P    L++QLR CLQ                    DE  R+  +    A         LY L   T LP V+  +  L ++ E PL+ + P+F  P P  + AVFPP+F   PPP LE FDLD+ F+S + +LA + +KC             +DL ++VR+  ++ G
Sbjct:    7 NAIVFNASKGEAFTLASNYKALRKRLR-GNWKIQSLKDE------ITSEKLFGVK--------------LWITAGPREKFSAAEFSVLKKFL-EDGGAILVMLREG-GETRYGTN------INFLLEEYGIVFNNDAVVRNVYY-KYHHPKEALISDGVLNRGISEAARKTLLETTDEDGSGRDAQ-------ALTFVYPFGATLNVMKPAVAVLSTGSVCFPLNRPILAFYQHELKEEGRRVEDEARDRGCLSSRAEKLGRRKTRALGEEERYGKEEQQKVKEQKSQGGKMAALGSSHMFSDQYLDKEENGKIMDVLFQWLT----------------------------------TSDIHLNQMDMED----PEISDYTMLPDTAALSEQLRVCLQ------------------EGDENPRDFTKLFDTA---------LYQL-DTTALPSVIKAYEQLNVKHE-PLQLIQPQFETPLPAFQPAVFPPAFRELPPPPLELFDLDETFSSEKARLAEITNKCTD-----------DDLEFYVRKCGDILG 442          
BLAST of EWM22806.1 vs. NCBI_GenBank
Match: gi|566019594|gb|ETI42505.1| (hypothetical protein F443_12383 [Phytophthora parasitica P1569] >gi|567985572|gb|ETL35911.1| hypothetical protein L916_12030 [Phytophthora parasitica] >gi|568014968|gb|ETL89145.1| hypothetical protein L917_11871 [Phytophthora parasitica] >gi|570323171|gb|ETO71119.1| hypothetical protein F444_12483 [Phytophthora parasitica P1976])

HSP 1 Score: 170.629 bits (431), Expect = 7.594e-43
Identity = 158/547 (28.88%), Postives = 238/547 (43.51%), Query Frame = 0
Query:   51 VVFNAVKGENY---QNMKRLFRRLRRAGLKVTINKHSDVPSILVREGQHVGIRPDASHGAPALSLPSLAVFACPQSAFTTHEEQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLS----SLPETEDDQAGKDE-----RQE---------EEGDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGEDGGEGKGAGRRGEAGKEEEEWLNGGERGKGRGGGGAGGGGRRGGRLVVLGAADMWTDAWLDQEDNGWLADVIFRWLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLFCGDARPEQERAHDPALPPSLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPPPPPTLEQFDLDQVFASPRTQLARLFHKCASSRLEGAKEGSREDLSYFVREAAEVRG 576
            V+F+A K E +     +K+L R+L+    +V +NK  D+    +++                    S+ VFA  +  F++ E   L  FL   G S+LL+L EG        E+   + LN WL+ +G+  + DAV+R   H ++ HPKEV +S       L    ++  G+ +     R+          E+   G +FVYPYG +L+V  PA  LLSSG  SYP +RPV+AAW+                                       GG      + GRL+V G+A  + D W+D+E+N  L ++IFRWLL                      D+S S                  H  A  P L   +  P  + L+ +LR C+Q     + +   D   L                        +  L+     +L+PE +  +  LG++ E PL  + P+F CP PPL+ AVFPP+   PPPP L+QFDLD+ FAS   +LA+L +KC           S +DL Y+VRE+A++ G
Sbjct:   18 VLFDASKKEQFYPNSGLKKLARKLKPL-CRVDVNK-DDLSRDRIKDA-------------------SVLVFAGIRERFSSTEFATLKEFL-NGGGSILLMLGEG-------GEQTFDTNLNGWLKDFGIFVNPDAVIRTVYH-KYHHPKEVLISSGVVNRELARMVNELYGRKDLLISGREAKPTGPGGALEKDQKGLTFVYPYGATLTVKKPAASLLSSGFISYPVNRPVVAAWQE--------------------------------------GGVAAPASKSGRLIVFGSAQCFVDEWIDKEENAKLQEIIFRWLLK---------------------DKSISL----------------NHQDAEDPDLNEYVRLPDTQALSDRLRSCMQ----ESEELPKDFTRLF-----------------------DDSLFKF-DTSLIPEAVNLYRELGVKHE-PLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASESLRLAQLTNKC-----------SDDDLEYYVRESADILG 419          
BLAST of EWM22806.1 vs. NCBI_GenBank
Match: gi|675199657|ref|XP_008908713.1| (hypothetical protein PPTG_13977 [Phytophthora parasitica INRA-310] >gi|568045247|gb|ETM42403.1| hypothetical protein L914_11941 [Phytophthora parasitica] >gi|568091387|gb|ETN06211.1| hypothetical protein PPTG_13977 [Phytophthora parasitica INRA-310] >gi|570979407|gb|ETP40350.1| hypothetical protein F442_12304 [Phytophthora parasitica P10297] >gi|970641135|gb|KUF83398.1| Intraflagellar Transport Protein 52 [Phytophthora nicotianae] >gi|970660798|gb|KUF98319.1| hypothetical protein AM588_10008957 [Phytophthora nicotianae])

HSP 1 Score: 170.244 bits (430), Expect = 8.393e-43
Identity = 158/547 (28.88%), Postives = 238/547 (43.51%), Query Frame = 0
Query:   51 VVFNAVKGENY---QNMKRLFRRLRRAGLKVTINKHSDVPSILVREGQHVGIRPDASHGAPALSLPSLAVFACPQSAFTTHEEQALSRFLLVEGQSVLLLLSEGVGNNQCGSEEGPSSLLNRWLQPWGMHAHHDAVLRRRRHPRFPHPKEVFLSLS----SLPETEDDQAGKDE-----RQE---------EEGDPGFSFVYPYGCSLSVAPPAKVLLSSGPYSYPAHRPVLAAWEGRAEGEDGGEGKGAGRRGEAGKEEEEWLNGGERGKGRGGGGAGGGGRRGGRLVVLGAADMWTDAWLDQEDNGWLADVIFRWLLHREPDAESSAPPSNLGQASFSHDRSPSRLVQLLFCGDARPEQERAHDPALPPSLQPRLCTPRVRDLAQQLRPCLQGKMYSTPQSHVDLNNLLNPPDEGGREGGRGRGKAGVPPGEEPPLYALRPNTLLPEVLATHHALGLEPEHPLRPVAPEFVCPQPPLRLAVFPPSFAPPPPPTLEQFDLDQVFASPRTQLARLFHKCASSRLEGAKEGSREDLSYFVREAAEVRG 576
            V+F+A K E +     +K+L R+L+    +V +NK  D+    +++                    S+ VFA  +  F++ E   L  FL   G S+LL+L EG        E+   + LN WL+ +G+  + DAV+R   H ++ HPKEV +S       L    ++  G+ +     R+          E+   G +FVYPYG +L+V  PA  LLSSG  SYP +RPV+AAW+                                       GG      + GRL+V G+A  + D W+D+E+N  L ++IFRWLL                      D+S S                  H  A  P L   +  P  + L+ +LR C+Q     + +   D   L                        +  L+     +L+PE +  +  LG++ E PL  + P+F CP PPL+ AVFPP+   PPPP L+QFDLD+ FAS   +LA+L +KC           S +DL Y+VRE+A++ G
Sbjct:   18 VLFDASKKEQFYPTSGLKKLARKLKPL-CRVDVNK-DDLSRDRIKDA-------------------SVLVFAGIRERFSSTEFATLKEFL-NGGGSILLMLGEG-------GEQTFDTNLNGWLKDFGIFVNPDAVIRTVYH-KYHHPKEVLISSGVVNRELARMVNELYGRKDLLISGREAKPTGPGGALEKDQKGLTFVYPYGATLTVKKPAASLLSSGFISYPVNRPVVAAWQE--------------------------------------GGVAAPASKSGRLIVFGSAQCFVDEWIDKEENAKLQEIIFRWLLK---------------------DKSISL----------------NHQDAEDPDLNEYVRLPDTQALSDRLRSCMQ----ESEELPKDFTRLF-----------------------DDSLFKF-DTSLIPEAVNLYRELGVKHE-PLTLIPPQFECPLPPLKSAVFPPALREPPPPALDQFDLDEHFASESLRLAQLTNKC-----------SDDDLEYYVRESADILG 419          
The following BLAST results are available for this feature:
BLAST of EWM22806.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103429|gb|EWM22806.1|0.000e+0100.00intraflagellar transport protein 52 [Nannochlorops... [more]
gi|553183511|ref|XP_005853911.1|0.000e+082.27intraflagellar transport protein 52, partial [Nann... [more]
gi|953494892|emb|CEG43533.1|5.508e-4529.22intraflagellar transport protein 52 homolog [Plasm... [more]
gi|646717406|gb|KDR20281.1|1.030e-4326.85Intraflagellar transport protein 52-like protein [... [more]
gi|1197305583|ref|XP_021122604.1|1.044e-4328.15intraflagellar transport protein 52 homolog [Anas ... [more]
gi|301090731|ref|XP_002895569.1|1.469e-4329.43Intraflagellar Transport Protein 52 [Phytophthora ... [more]
gi|676386317|ref|XP_009036437.1|1.527e-4330.32hypothetical protein AURANDRAFT_2280, partial [Aur... [more]
gi|960964088|ref|XP_014796793.1|6.389e-4327.22PREDICTED: intraflagellar transport protein 52 hom... [more]
gi|566019594|gb|ETI42505.1|7.594e-4328.88hypothetical protein F443_12383 [Phytophthora para... [more]
gi|675199657|ref|XP_008908713.1|8.393e-4328.88hypothetical protein PPTG_13977 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7892rna7892Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications