EWM29904.1, cds784 (CDS) Nannochloropsis gaditana

Overview
NameEWM29904.1
Unique Namecds784
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:408099..409196 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29904.1
ProductMethyltransferase FkbM
Orig transcript idgnl|cribi|Naga_100035g45.3368.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:408099..409196 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR006342FkbM_mtfrase
Homology
BLAST of EWM29904.1 vs. NCBI_GenBank
Match: gi|585112487|gb|EWM29904.1| (Methyltransferase FkbM [Nannochloropsis gaditana])

HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0
Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 0
Query:    1 MPAHAAYRKFALARAVQVARSPCMLFLGALSGAILGSIIGGHMAQETLHPYTLAATNTNSGGESEACPEWTISALTQKRMQRDYCIRRFTGEVPEQDLVKTKLLAPDQTHMDFIVYDGNDIVSGAIRSNGHWEHHLSTALVMVLSKVAEDRGLPHEQVHLLDIGGNVGAHTVYAQAAGFSVVTFEPLPQNEAIIRTNLCFNDPKQERVTLFTNGLGSEPTLCKQFSAPNYNRGNGIVNCNGSIPQHPDGQLIYRGQMEVLRLDDVLLPCKDGTQLPPDIVFGAMKMDVEGFEPEVLKGGETFFTKALIPYIVFEIGRMPETRRQAVLQFFYGLGYQASTTGFFQGLGQPKDLPGTEDVYLVLLQA 365
            MPAHAAYRKFALARAVQVARSPCMLFLGALSGAILGSIIGGHMAQETLHPYTLAATNTNSGGESEACPEWTISALTQKRMQRDYCIRRFTGEVPEQDLVKTKLLAPDQTHMDFIVYDGNDIVSGAIRSNGHWEHHLSTALVMVLSKVAEDRGLPHEQVHLLDIGGNVGAHTVYAQAAGFSVVTFEPLPQNEAIIRTNLCFNDPKQERVTLFTNGLGSEPTLCKQFSAPNYNRGNGIVNCNGSIPQHPDGQLIYRGQMEVLRLDDVLLPCKDGTQLPPDIVFGAMKMDVEGFEPEVLKGGETFFTKALIPYIVFEIGRMPETRRQAVLQFFYGLGYQASTTGFFQGLGQPKDLPGTEDVYLVLLQA
Sbjct:    1 MPAHAAYRKFALARAVQVARSPCMLFLGALSGAILGSIIGGHMAQETLHPYTLAATNTNSGGESEACPEWTISALTQKRMQRDYCIRRFTGEVPEQDLVKTKLLAPDQTHMDFIVYDGNDIVSGAIRSNGHWEHHLSTALVMVLSKVAEDRGLPHEQVHLLDIGGNVGAHTVYAQAAGFSVVTFEPLPQNEAIIRTNLCFNDPKQERVTLFTNGLGSEPTLCKQFSAPNYNRGNGIVNCNGSIPQHPDGQLIYRGQMEVLRLDDVLLPCKDGTQLPPDIVFGAMKMDVEGFEPEVLKGGETFFTKALIPYIVFEIGRMPETRRQAVLQFFYGLGYQASTTGFFQGLGQPKDLPGTEDVYLVLLQA 365          
BLAST of EWM29904.1 vs. NCBI_GenBank
Match: gi|1027023874|ref|XP_016604665.1| (FkbM family methyltransferase [Spizellomyces punctatus DAOM BR117] >gi|907090137|gb|KNC96625.1| FkbM family methyltransferase [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 139.043 bits (349), Expect = 4.571e-34
Identity = 115/354 (32.49%), Postives = 160/354 (45.20%), Query Frame = 0
Query:   20 RSPCMLF-LGALSGAILGSIIGGHMAQETLHPYTLAATNTNSGGESEACPEWTISALTQKRMQRD-YCIRRFTGEVPEQDLVKTKLLAPDQTHMDFIVYD-GNDIVSGAIRSNGHWEHHLSTALVMVLSKVAEDRGLPHEQVHLLDIGGNVGAHTVYAQAAGFSVVTFEPLPQNEAIIRTNLCFNDPKQERVTLFTNGLGSEPTLCKQFSAPNYNRGNGIVNCNGSIPQHPDGQLIYRGQMEVLRLDDVLLPCKDGTQLPPDIVFGAMKMDVEGFEPEVLKGGET--FFTKALIPYIVFEI-----GRMPETRRQAVLQFFYGLGYQASTTGFFQGLGQPKDLPGTEDVYLVLL 363
            RSP M F L A++  +  S+  G   + T            S G  ++  E  I+  T+  ++++ +C  R     P  D    K +  D       +YD G D VS  I   G WEH  +  ++  L    + RG   ++   LDIGGNVG +TV A A G  V  FEP+PQNE +IR +LC N      V  +  GLG++P  C+  S  N N GNGI+ C     +    Q   R  + +  LD ++   +   +      FG MKMDVEGFE EVLKGGE   F T    P I+ E       R+       +L    G GY+  T+ +F    + KD   T  VY   L
Sbjct:    9 RSPRMWFALAAVAFLLFVSVPWGRPTEIT----------RTSFGMPKSWYENKIAWRTRAAIEQNAFC--RTAAVTPLPDKTVEKTIDLDGVSYKLTLYDTGMDAVSAIIIRTGVWEHAATRQVLWALKLANDVRG--QDRATFLDIGGNVGWYTVTAAAHGHRVAVFEPMPQNEYLIRRSLCANRDLARHVDYYAMGLGAQPDECRIISH-NENHGNGILQCGEDSKKPVADQHGVRADVSIHTLDGIVQDDRRAGE------FGVMKMDVEGFESEVLKGGEKSLFATDNRPPMIMMEYIPSLQARLLGDDPTGILTLLDGYGYEIRTS-WFTHEAKAKDSTETGKVYNSFL 340          
BLAST of EWM29904.1 vs. NCBI_GenBank
Match: gi|678318282|emb|CDW85353.1| (UNKNOWN [Stylonychia lemnae])

HSP 1 Score: 118.627 bits (296), Expect = 1.082e-26
Identity = 75/228 (32.89%), Postives = 106/228 (46.49%), Query Frame = 0
Query:  120 DIVSGAIRSNGHWEHHLSTALVMVLSKVAEDRGLPHEQVHLLDIGGNVGAHTVYAQAAGFSVVTFEPLPQNEAIIRTNLCFNDPKQERVTLFTNGLGSEPTLCKQFSAPNYNRGNGIVNCNGSIPQHPD----GQLIYRGQMEVLRLDDVLLPCKDGTQLPPDIVFGAMKMDVEGFEPEVLKGGETFFTKALIPYIVFEIG-RMPETRRQAVLQFFYGLGYQASTTGF 342
            DI+S  I     WE H S  +V  L K++     P  ++ LLDIG N+G  T  A +  ++V+ FEPL QN   I   +C N      + L    LG++   C  +S P  N  NGI+ C   I  H        +I R ++ +  LD           + PDI  G +K+DVE FE +V  GG+ F  +  IPYIV E   +     ++     F  LGY+A  T F
Sbjct:  103 DIISYVIFETNSWEDHNSIQIVNALKKIS--IQYPDYKIALLDIGANLGWFTFMAASLDYNVIAFEPLDQNYKAIEYAMCLNQNVSNLIQLEKFALGAKNETCNLYSQPQ-NTQNGIIRCGDDINDHSKVVDVSNVILRQEVPIRTLDSY------TKTISPDIKIGVLKIDVEEFEYDVFVGGKNFLKEHKIPYIVQEYSLKSYGAHQEDHFNLFKDLGYEARLTSF 321          
BLAST of EWM29904.1 vs. NCBI_GenBank
Match: gi|678329198|emb|CDW79770.1| (UNKNOWN [Stylonychia lemnae])

HSP 1 Score: 118.627 bits (296), Expect = 3.660e-26
Identity = 75/228 (32.89%), Postives = 106/228 (46.49%), Query Frame = 0
Query:  120 DIVSGAIRSNGHWEHHLSTALVMVLSKVAEDRGLPHEQVHLLDIGGNVGAHTVYAQAAGFSVVTFEPLPQNEAIIRTNLCFNDPKQERVTLFTNGLGSEPTLCKQFSAPNYNRGNGIVNCNGSIPQHPD----GQLIYRGQMEVLRLDDVLLPCKDGTQLPPDIVFGAMKMDVEGFEPEVLKGGETFFTKALIPYIVFEIG-RMPETRRQAVLQFFYGLGYQASTTGF 342
            DI+S  I     WE H S  +V  L K++     P  ++ LLDIG N+G  T  A +  ++V+ FEPL QN   I   +C N      + L    LG++   C  +S P  N  NGI+ C   I  H        +I R ++ +  LD           + PDI  G +K+DVE FE +V  GG+ F  +  IPYIV E   +     ++     F  LGY+A  T F
Sbjct:  187 DIISYVIFETNSWEDHNSIQIVNALKKIS--IQYPDYKIALLDIGANLGWFTFMAASLDYNVIAFEPLDQNYKAIEYAMCLNQNVSNLIQLEKFALGAKNETCNLYSQPQ-NTQNGIIRCGDDINDHSKVVDVSNVILRQEVPIRTLDSYT------KTISPDIKIGVLKIDVEEFEYDVFVGGKNFLKEHKIPYIVQEYSLKSYGAHQEDHFNLFKDLGYEARLTSF 405          
BLAST of EWM29904.1 vs. NCBI_GenBank
Match: gi|926796690|ref|XP_013906081.1| (hypothetical protein MNEG_0895 [Monoraphidium neglectum] >gi|761977316|gb|KIZ07062.1| hypothetical protein MNEG_0895 [Monoraphidium neglectum])

HSP 1 Score: 115.161 bits (287), Expect = 1.773e-25
Identity = 83/254 (32.68%), Postives = 120/254 (47.24%), Query Frame = 0
Query:  107 DQTHMDFIVYDGNDIVSGAIRSNGHWEHHLSTALVMVLSK---------VAEDRGLPHEQVHLLDIGGNVGAHTVYAQAAGFSVVTFEPLPQNEAIIRTNLCFNDPKQERVTLFTNGLGSEPTLCKQFSAPNYNRGNGIVNCNGSIPQ-------HPDGQLIYRGQMEVLRLDDVLLPCKDGTQLPPDIVFGAMKMDVEGFEPEVLKGGETFFTKALIPYIVFEI--GRMPETRRQAVLQFFYGLGYQASTTGF 342
            D+T++   VY G+DIVSG +    HWE      +V  +              DR  P     + D+GGNVG   + A A G  V  FEP+  N A++R +LC N    +RV L+  GL ++ + CK +S  + NRGNGI +C  +  Q         +     RG +  +RLD ++           D     MKMDVEG+E EVLKG     TK  + +I+ E+  G +    + A L+    LGY  S+  F
Sbjct:   36 DKTNVTAYVYAGDDIVSGWLAGVHHWEAKDVEEMVYAMGAPVPQSPGDLAHPDRWKPPAAPFVADVGGNVGTFLLNAAARGAVVAAFEPMANNIALLRASLCANPWLMDRVALYGTGLSTKASKCKIYSDTS-NRGNGITDCEKTEEQVIAWFKSEFNITAAVRGSITTMRLDSII-----------DHDVQVMKMDVEGYESEVLKGAHGLLTKHNVWHIMTEVNYGLLKAEGQAAFLKLINDLGYYISSISF 277          
BLAST of EWM29904.1 vs. NCBI_GenBank
Match: gi|552811978|ref|XP_005843604.1| (hypothetical protein CHLNCDRAFT_140178 [Chlorella variabilis] >gi|307103240|gb|EFN51502.1| hypothetical protein CHLNCDRAFT_140178 [Chlorella variabilis])

HSP 1 Score: 110.153 bits (274), Expect = 3.928e-24
Identity = 69/189 (36.51%), Postives = 94/189 (49.74%), Query Frame = 0
Query:  110 HMDFIVYDG----NDIVSGAIRSNGHWEHHLSTALVMVLSKVAEDRGLPHEQVHLLDIGGNVGAHTVYAQAAGFSVVTFEPLPQNEAIIRTNLCFNDPKQERVTLFTNGLGSEPTLCKQFSAPNYNRGNGIVNCNGSIPQHPDGQLIYRGQMEVLRLDDVLLPCKDGTQLPPDIVFGAMKMDVEGFEPE 294
            ++   VY G    +DIVS +I   G WE H +  +V  L +  + RGL  EQV+ +DIG NVG  TV A A G+SV+ FE    N   IR  LC N   Q+RV L   GL      C   +A + N G+G V CN          L+  GQ +++ LD  +    +G         G +K+DVEGFE +
Sbjct:  103 NVSMWVYQGTSKHHDIVSSSIEQGGAWEPHETREVVTKLERFQQARGLSKEQVYFIDIGANVGYFTVNAAALGYSVIAFEATTPNAFAIRQTLCSNPQLQKRVALVNKGLSDAIERCAVVAASD-NVGDGHVECNKDAADLAASGLVVHGQFDLITLDSYV----EGHLEALRQKVGVVKIDVEGFEDK 286          
BLAST of EWM29904.1 vs. NCBI_GenBank
Match: gi|585106497|gb|EWM24875.1| (Methyltransferase FkbM [Nannochloropsis gaditana])

HSP 1 Score: 108.612 bits (270), Expect = 1.919e-23
Identity = 71/228 (31.14%), Postives = 112/228 (49.12%), Query Frame = 0
Query:  122 VSGAIRSNGHWEHHLSTALVMVLSKVA-EDRGLPH----------EQVHLLDIGGNVGAHTVYAQAAGFSVVTFEPLPQNEAIIRTNLCFNDPKQERVTLFTNGLGSEPTLCKQFSAPNYNRGNGIVNCNGSIPQHPDGQLIYRGQMEVLRLDDVLLPCKDGTQLPPDIVFG---AMKMDVEGFEPEVLKGGETFFTKALIPYIVFEIGRMPETRRQAVLQFFYGLGY 335
            VS  I  +G+WE    + L+++L +   + R   H          +++ +LD+GGN+GA+T+    AGF V+TFE + +N   IR  +C N   +ERV L   GL  +   C        N G+GI  C G        + +    ++V  LD  L   +      P    G   A+KMDVEGFE  V++GG+ F   + +  ++ E G MP  +R+ +L++F   GY
Sbjct:   15 VSRDIAMHGYWEMENMSVLLLLLERARWQRREWRHPESPSRPPRRDELVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKEETCT-LVVDKENIGDGITRCQGQ-GVSLGSEEVREDAIQVTTLDRALYCPQSSRDAVPSFYTGRPAALKMDVEGFEMLVVQGGQGFLNTSDLAVVLHENGHMPFEKRKYLLEYFVDRGY 240          
BLAST of EWM29904.1 vs. NCBI_GenBank
Match: gi|678331459|emb|CDW78597.1| (UNKNOWN [Stylonychia lemnae])

HSP 1 Score: 103.219 bits (256), Expect = 5.657e-22
Identity = 61/196 (31.12%), Postives = 100/196 (51.02%), Query Frame = 0
Query:  126 IRSNGHWEHHLSTALVMVLS-------KVAEDRGLPHEQVHLLDIGGNVGAHTVYAQAAGFSVVTFEPLPQNEAIIRTNLCFNDPKQERVTLFTNGLGSEPTLCKQFSAPNYNRGNGIVNCNGSIPQHPDGQLIYRGQMEVLRLDDVLLPCKDGTQLPPDIVFGAMKMDVEGFEPEVLKGGETFFTKALIPYIVFE 314
            +++      +L  A +M+L        KV ED+     +V  +D+GGN+G  T+ A    F V TFEP+  N   ++ +LC     +E+V +F  GLG +  LC  +S  + N  NG+V C        +    +R  +++ +LDD +        +P D++ G MK+D+EG+E  + KGG  F  +  IPYI+ E
Sbjct:    8 VKTGRQQTSNLVRASMMILKFLFGWHPKVNEDK-----RVAFIDVGGNIGWFTLVAARNEFLVYTFEPMKSNTDALKYSLCLQPSLKEKVQIFEYGLGDQNYLCGIYSL-DINIQNGLVKCESQFAAGAE----FREFIQLKKLDDFI------DNIPDDVLIGVMKIDIEGYEYFLFKGGSQFINRYKIPYIIIE 187          
BLAST of EWM29904.1 vs. NCBI_GenBank
Match: gi|553182892|ref|XP_005853802.1| (methyltransferase family [Nannochloropsis gaditana CCMP526] >gi|422295258|gb|EKU22557.1| methyltransferase family [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.145 bits (261), Expect = 1.191e-21
Identity = 78/272 (28.68%), Postives = 123/272 (45.22%), Query Frame = 0
Query:  101 TKLLAPDQTHMDFIVYDGNDIVSGAIRSNGHWEHHLSTALVMVLSKVA-EDRGLPH----------EQVHLLDIGGNVGAHTVYAQAAGFSVVTFEPLPQNEAIIRTNLCFNDPKQERVTLFTNGLGSE---------------PTLCKQFSAP--------NYNRGNGIVNCNGSIPQHPDGQLIYRGQMEVLRLDDVLLPCKDGTQLPPDIVFG---AMKMDVEGFEPEVLKGGETFFTKALIPYIVFEIGRMPETRRQAVLQFFYGLGY 335
            T+ +A    ++    Y   D VS  I  +G+WE    + L+++L +   + R   H          +++ +LD+GGN+GA+T+    AGF V+TFE + +N   IR  +C N   +ERV L   GL  +               P    Q S P          N G+GI  C G        + +    ++V  LD  L   +      P    G   A+KMDVEGFE  V++GG+ F   + +  ++ E G MP  +R+ +L++F   GY
Sbjct:   56 TQWVAEKDRNVTLFGYAEKDKVSRDIAMHGYWEMENMSVLLLLLERARWQRREWRHPESPSRPPRRDELVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKEESRPSSLSRTFDFLPVPTAQSSQPQTCTLVVDKENIGDGITRCQGQ-GVSLGSEEVREDAIQVTTLDRALYCPQSSRDAVPSFYTGRPAALKMDVEGFEMLVVQGGQGFLNTSDLAVVLHENGHMPFEKRKYLLEYFVDRGY 326          
BLAST of EWM29904.1 vs. NCBI_GenBank
Match: gi|678332191|emb|CDW78221.1| (UNKNOWN [Stylonychia lemnae])

HSP 1 Score: 102.064 bits (253), Expect = 2.966e-21
Identity = 70/220 (31.82%), Postives = 103/220 (46.82%), Query Frame = 0
Query:  140 LVMVLSKVAEDRGLPHEQVHLLDIGGNVGAHTVYAQAAGFSVVTFEPLPQNEAIIRTNLCFNDPKQERVTLFTNGLGSEPTLCKQFSAPNYNRGNGIVNCNGSIPQHPD----GQLIYRGQMEVLRLDDVLLPCKDGTQLPPDIVFGAMKMDVEGFEPEVLKGGETFFTKALIPYIVFEIGRMPE-TRRQAVLQFFYGLGYQASTTGF----FQGLGQPK 350
            L+  L KV+     P +++ LLDIG N+G  T  A +  ++V+ FEP   N   I   +C N      + L    LG++   C  +S  +YN  NGI+ C   I  H        +++R ++ +  LD           + P+I  G +K+DVE FE +VL GG+TF     IPYIV E   +     ++     F  LGY A  TGF    FQ   + K
Sbjct:   40 LINALKKVS--IQYPDQKIALLDIGANLGWFTFIAASLDYNVIAFEPYEPNYKAIEYAMCLNQNVSNLIQLEKFALGTKNESCNLYSH-DYNTQNGIIRCGDDINDHSKLLDVSIVLFRQEVPIRTLDSY------SKTISPNIKIGVLKIDVEEFEYDVLLGGKTFLKDHKIPYIVQEYSLISYGANQEDHFNIFKDLGYVARLTGFNGQEFQTFNELK 250          
The following BLAST results are available for this feature:
BLAST of EWM29904.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112487|gb|EWM29904.1|0.000e+0100.00Methyltransferase FkbM [Nannochloropsis gaditana][more]
gi|1027023874|ref|XP_016604665.1|4.571e-3432.49FkbM family methyltransferase [Spizellomyces punct... [more]
gi|678318282|emb|CDW85353.1|1.082e-2632.89UNKNOWN [Stylonychia lemnae][more]
gi|678329198|emb|CDW79770.1|3.660e-2632.89UNKNOWN [Stylonychia lemnae][more]
gi|926796690|ref|XP_013906081.1|1.773e-2532.68hypothetical protein MNEG_0895 [Monoraphidium negl... [more]
gi|552811978|ref|XP_005843604.1|3.928e-2436.51hypothetical protein CHLNCDRAFT_140178 [Chlorella ... [more]
gi|585106497|gb|EWM24875.1|1.919e-2331.14Methyltransferase FkbM [Nannochloropsis gaditana][more]
gi|678331459|emb|CDW78597.1|5.657e-2231.12UNKNOWN [Stylonychia lemnae][more]
gi|553182892|ref|XP_005853802.1|1.191e-2128.68methyltransferase family [Nannochloropsis gaditana... [more]
gi|678332191|emb|CDW78221.1|2.966e-2131.82UNKNOWN [Stylonychia lemnae][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna784rna784Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications