EWM22842.1, cds7831 (CDS) Nannochloropsis gaditana

Overview
NameEWM22842.1
Unique Namecds7831
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:131161..131298 +
Alignment locationCM002474.1:131370..131443 +
Alignment locationCM002474.1:131580..132170 +
Alignment locationCM002474.1:132345..132379 +
Alignment locationCM002474.1:132502..132644 +
Alignment locationCM002474.1:132837..132937 +
Alignment locationCM002474.1:133067..133124 +
Alignment locationCM002474.1:133197..133301 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22842.1
Productpilus assembly protein
Orig transcript idgnl|cribi|Naga_100293g2.8348.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:131161..131298 +
CM002474.1supercontigCM002474.1:131370..131443 +
CM002474.1supercontigCM002474.1:131580..132170 +
CM002474.1supercontigCM002474.1:132345..132379 +
CM002474.1supercontigCM002474.1:132502..132644 +
CM002474.1supercontigCM002474.1:132837..132937 +
CM002474.1supercontigCM002474.1:133067..133124 +
CM002474.1supercontigCM002474.1:133197..133301 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom
IPR019734TPR_repeat
Homology
[Close]
BLAST of EWM22842.1 vs. NCBI_GenBank
Match: gi|585103481|gb|EWM22842.1| (pilus assembly protein [Nannochloropsis gaditana])

HSP 1 Score: 838.951 bits (2166), Expect = 0.000e+0
Identity = 414/414 (100.00%), Postives = 414/414 (100.00%), Query Frame = 0 
Query:    1 MTTSKAVAAAAGSVASTRDHGILLRSLYRAMSRHGKWFDATPMAKAVIPFPLPFSYQVLLGGHNRDFYGQNLSVHEAIRCGFGPAASSHAQTEVSEELRIDMTLQLARQLAGWRHLLSSSSSSFSAPLISQATRPLDSLSSSAATAGTESETGGVFHPLTVDVAPYTRELIPAFFFTYFSTASSLSPLGAPSSSSSSSPSSSSSSSSSTSSTTSTSSFSSLPSSPVTYQEVYGNARKHNSQLHAALEKLEEAERLLEAGGREGGVIDRERIKSLYQMSLALYPTADARTYLAYLLSYEGALKEAKEELKEAMKQDAEFGNAWNDLGLYLWQEGRREEALKVLAEAKKKRRYQVRYKPYLNSGHIFLELGQPTSALVEYLHALHHAGPDRGREIRAVICDMARVLSQEELREGGG 414
            MTTSKAVAAAAGSVASTRDHGILLRSLYRAMSRHGKWFDATPMAKAVIPFPLPFSYQVLLGGHNRDFYGQNLSVHEAIRCGFGPAASSHAQTEVSEELRIDMTLQLARQLAGWRHLLSSSSSSFSAPLISQATRPLDSLSSSAATAGTESETGGVFHPLTVDVAPYTRELIPAFFFTYFSTASSLSPLGAPSSSSSSSPSSSSSSSSSTSSTTSTSSFSSLPSSPVTYQEVYGNARKHNSQLHAALEKLEEAERLLEAGGREGGVIDRERIKSLYQMSLALYPTADARTYLAYLLSYEGALKEAKEELKEAMKQDAEFGNAWNDLGLYLWQEGRREEALKVLAEAKKKRRYQVRYKPYLNSGHIFLELGQPTSALVEYLHALHHAGPDRGREIRAVICDMARVLSQEELREGGG
Sbjct:    1 MTTSKAVAAAAGSVASTRDHGILLRSLYRAMSRHGKWFDATPMAKAVIPFPLPFSYQVLLGGHNRDFYGQNLSVHEAIRCGFGPAASSHAQTEVSEELRIDMTLQLARQLAGWRHLLSSSSSSFSAPLISQATRPLDSLSSSAATAGTESETGGVFHPLTVDVAPYTRELIPAFFFTYFSTASSLSPLGAPSSSSSSSPSSSSSSSSSTSSTTSTSSFSSLPSSPVTYQEVYGNARKHNSQLHAALEKLEEAERLLEAGGREGGVIDRERIKSLYQMSLALYPTADARTYLAYLLSYEGALKEAKEELKEAMKQDAEFGNAWNDLGLYLWQEGRREEALKVLAEAKKKRRYQVRYKPYLNSGHIFLELGQPTSALVEYLHALHHAGPDRGREIRAVICDMARVLSQEELREGGG 414
[Close]
BLAST of EWM22842.1 vs. NCBI_GenBank
Match: gi|1125450200|gb|OLD76531.1| (hypothetical protein AUG87_08420 [Candidatus Rokubacteria bacterium 13_1_20CM_4_70_14])

HSP 1 Score: 101.293 bits (251), Expect = 6.753e-22
Identity = 53/122 (43.44%), Postives = 78/122 (63.93%), Query Frame = 0 
Query:  267 DRERIKSLYQMSLALYPTADARTYLAYLLSYEGALKEAKEELKEAMKQDAEFGNAWNDLGLYLWQEGRREEALKVLAEAKKKRRYQVRYKPYLNSGHIFLELGQPTSALVEYLHALHHAGPD 388
            D ER   LYQ S+ + PTA+A T+L + +S++G L+EA  E  +A++ D +FGN +ND+G YL Q+G+ EEA+  L +AK   RY+ R  PY+N G I+L  G+   AL E+  A+  A  D
Sbjct:   25 DLERAAELYQRSIDVCPTAEAHTFLGWTMSFQGRLEEATRECLKAIEVDPDFGNPYNDIGCYLMQQGKLEEAIPWLEKAKHAPRYEPRQFPYMNLGRIYLRQGRWADALREFEAAVRLAPTD 146
[Close]
BLAST of EWM22842.1 vs. NCBI_GenBank
Match: gi|1125141400|gb|OLA98736.1| (hypothetical protein AUH09_07485 [Candidatus Rokubacteria bacterium 13_2_20CM_70_12] >gi|1125265808|gb|OLC11290.1| hypothetical protein AUH26_06835 [Candidatus Rokubacteria bacterium 13_1_40CM_69_96] >gi|1125310076|gb|OLC52714.1| hypothetical protein AUH77_11680 [Candidatus Rokubacteria bacterium 13_1_40CM_4_69_39] >gi|1125393938|gb|OLD30091.1| hypothetical protein AUI18_01955 [Candidatus Rokubacteria bacterium 13_1_40CM_2_70_45] >gi|1125441369|gb|OLD68775.1| hypothetical protein AUF63_02165 [Candidatus Rokubacteria bacterium 13_1_20CM_70_15] >gi|1125531495|gb|OLE47778.1| hypothetical protein AUG01_09330 [Candidatus Rokubacteria bacterium 13_1_20CM_2_69_58])

HSP 1 Score: 100.908 bits (250), Expect = 8.443e-22
Identity = 53/122 (43.44%), Postives = 78/122 (63.93%), Query Frame = 0 
Query:  267 DRERIKSLYQMSLALYPTADARTYLAYLLSYEGALKEAKEELKEAMKQDAEFGNAWNDLGLYLWQEGRREEALKVLAEAKKKRRYQVRYKPYLNSGHIFLELGQPTSALVEYLHALHHAGPD 388
            D ER   LYQ S+ + PTA+A T+L + +S++G L+EA  E  +A++ D +FGN +ND+G YL Q+G+ EEA+  L +AK   RY+ R  PY+N G I+L  G+   AL E+  A+  A  D
Sbjct:   25 DLERAVELYQRSIDVCPTAEAHTFLGWTMSFQGRLEEATRECLKAIEVDPDFGNPYNDIGCYLMQQGKLEEAIPWLEKAKHAPRYEPRQFPYMNLGRIYLRQGRWADALREFEAAVRLAPTD 146
[Close]
BLAST of EWM22842.1 vs. NCBI_GenBank
Match: gi|1125348783|gb|OLC88478.1| (hypothetical protein AUJ05_14175 [Candidatus Rokubacteria bacterium 13_1_40CM_3_69_38])

HSP 1 Score: 100.908 bits (250), Expect = 8.883e-22
Identity = 53/122 (43.44%), Postives = 78/122 (63.93%), Query Frame = 0 
Query:  267 DRERIKSLYQMSLALYPTADARTYLAYLLSYEGALKEAKEELKEAMKQDAEFGNAWNDLGLYLWQEGRREEALKVLAEAKKKRRYQVRYKPYLNSGHIFLELGQPTSALVEYLHALHHAGPD 388
            D ER   LYQ S+ + PTA+A T+L + +S++G L+EA  E  +A++ D +FGN +ND+G YL Q+G+ EEA+  L +AK   RY+ R  PY+N G I+L  G+   AL E+  A+  A  D
Sbjct:   25 DLERAVELYQRSIDVCPTAEAHTFLGWTMSFQGRLEEATRECLKAIEVDPDFGNPYNDIGCYLMQQGKLEEAIPWLEKAKHAPRYEPRQFPYMNLGRIYLRQGRWADALREFEAAVRLAPTD 146
[Close]
BLAST of EWM22842.1 vs. NCBI_GenBank
Match: gi|1125199098|gb|OLB51727.1| (hypothetical protein AUH99_06855 [Candidatus Rokubacteria bacterium 13_2_20CM_2_70_11])

HSP 1 Score: 100.908 bits (250), Expect = 1.110e-21
Identity = 53/122 (43.44%), Postives = 79/122 (64.75%), Query Frame = 0 
Query:  267 DRERIKSLYQMSLALYPTADARTYLAYLLSYEGALKEAKEELKEAMKQDAEFGNAWNDLGLYLWQEGRREEALKVLAEAKKKRRYQVRYKPYLNSGHIFLELGQPTSALVEYLHALHHAGPD 388
            D ER   LYQ S+ ++PTA+A T+L + LS++G L+EA  E  +A++ D +FGN +ND+G YL Q+G+ EEA+  L +AK+  RY+ R  PY+N G I+L   +   AL E+  A+  A  D
Sbjct:   25 DLERAIDLYQQSIDVHPTAEAHTFLGWTLSFQGRLEEATRECLKAIEVDPDFGNPYNDIGCYLMQQGKLEEAIPWLEKAKRAPRYEPRQFPYMNLGRIYLRQARWWEALREFEVAVRLAPAD 146
[Close]
BLAST of EWM22842.1 vs. NCBI_GenBank
Match: gi|1125151438|gb|OLB07964.1| (hypothetical protein AUH14_02270 [Candidatus Rokubacteria bacterium 13_2_20CM_69_15_1])

HSP 1 Score: 100.523 bits (249), Expect = 1.156e-21
Identity = 53/122 (43.44%), Postives = 79/122 (64.75%), Query Frame = 0 
Query:  267 DRERIKSLYQMSLALYPTADARTYLAYLLSYEGALKEAKEELKEAMKQDAEFGNAWNDLGLYLWQEGRREEALKVLAEAKKKRRYQVRYKPYLNSGHIFLELGQPTSALVEYLHALHHAGPD 388
            D ER   LYQ S+ ++PTA+A T+L + LS++G L+EA  E  +A++ D +FGN +ND+G YL Q+G+ EEA+  L +AK+  RY+ R  PY+N G I+L   +   AL E+  A+  A  D
Sbjct:   25 DLERAIDLYQQSIDVHPTAEAHTFLGWTLSFQGRLEEATRECLKAIEVDPDFGNPYNDIGCYLMQQGKLEEAIPWLEKAKRAPRYEPRQFPYMNLGRIYLRQARWWEALREFEVAVRLAPAD 146
[Close]
BLAST of EWM22842.1 vs. NCBI_GenBank
Match: gi|1125272592|gb|OLC17587.1| (hypothetical protein AUH29_01505 [Candidatus Rokubacteria bacterium 13_1_40CM_69_27])

HSP 1 Score: 100.523 bits (249), Expect = 2.023e-21
Identity = 57/146 (39.04%), Postives = 91/146 (62.33%), Query Frame = 0 
Query:  267 DRERIKSLYQMSLALYPTADARTYLAYLLSYEGALKEAKEELKEAMKQDAEFGNAWNDLGLYLWQEGRREEALKVLAEAKKKRRYQVRYKPYLNSGHIFLELGQPTSALVEYLHALHHAGPDRGREIRAVICDMARVLSQEELREG 412
            D E    LY+ S+A+ PTA+A T+L +  S++G L+EA  E  +A++ D +FGN +ND+G+YL Q+G+ +EA+  L +AK   RY+ R  PY+N G I+++LG+   AL E+  A+  A PD     +A+   +AR+      R+G
Sbjct:   25 DLEAAIELYRRSIAMCPTAEAHTFLGWTYSFQGRLEEATAECLKAIEIDPDFGNPYNDIGVYLMQQGKLDEAVPWLEKAKGAARYEPRQFPYMNLGRIYIKLGRWPDALREFEGAVRMA-PDDAEACKALHGLLARLNGHHARRDG 169
[Close]
BLAST of EWM22842.1 vs. NCBI_GenBank
Match: gi|1125397250|gb|OLD32984.1| (hypothetical protein AUI49_01475, partial [Candidatus Rokubacteria bacterium 13_1_40CM_2_68_13])

HSP 1 Score: 98.5969 bits (244), Expect = 6.025e-21
Identity = 58/147 (39.46%), Postives = 88/147 (59.86%), Query Frame = 0 
Query:  242 LHAALEKLEEAERLLEAGGREGGVIDRERIKSLYQMSLALYPTADARTYLAYLLSYEGALKEAKEELKEAMKQDAEFGNAWNDLGLYLWQEGRREEALKVLAEAKKKRRYQVRYKPYLNSGHIFLELGQPTSALVEYLHALHHAGPD 388
            L  A+E   EA R   AG       D +   +LY+ SLA+ PTA+A T+L +  S++G   +A EE  +A+K D +FGN +ND+G+YL Q+G+ +EA+  L +AK+  RY+ R  P++N G I++  GQ   AL E+  A+  A  D
Sbjct:    2 LERAIELWREAYRRQMAG-------DLDEAITLYRRSLAVRPTAEAHTFLGWTYSFQGRFDDATEECLKAIKVDPDFGNPYNDIGVYLMQQGKLDEAVPWLEKAKRAPRYEPRQFPFMNLGRIYIRQGQWWQALREFEGAVTAAPGD 141
[Close]
BLAST of EWM22842.1 vs. NCBI_GenBank
Match: gi|1125154440|gb|OLB10710.1| (hypothetical protein AUH18_07430 [Candidatus Rokubacteria bacterium 13_2_20CM_69_10] >gi|1125183164|gb|OLB36981.1| hypothetical protein AUI04_17520 [Candidatus Rokubacteria bacterium 13_2_20CM_2_64_8] >gi|1125470430|gb|OLD94312.1| hypothetical protein AUG80_18880 [Candidatus Rokubacteria bacterium 13_1_20CM_4_68_9] >gi|1125524437|gb|OLE41742.1| hypothetical protein AUG14_14285 [Candidatus Rokubacteria bacterium 13_1_20CM_2_68_19])

HSP 1 Score: 97.8265 bits (242), Expect = 8.111e-21
Identity = 50/122 (40.98%), Postives = 79/122 (64.75%), Query Frame = 0 
Query:  267 DRERIKSLYQMSLALYPTADARTYLAYLLSYEGALKEAKEELKEAMKQDAEFGNAWNDLGLYLWQEGRREEALKVLAEAKKKRRYQVRYKPYLNSGHIFLELGQPTSALVEYLHALHHAGPD 388
            D +   +LY+ SLA+ PTA+A T+L +  S++G   +A EE  +A+K D +FGN +ND+G+YL Q+G+ +EA+  L +AK+  RY+ R  P++N G I++  GQ   AL E+  A+  A  D
Sbjct:    4 DLDEAITLYRRSLAVRPTAEAHTFLGWTYSFQGRFDDATEECLKAIKVDPDFGNPYNDIGVYLMQQGKLDEAVPWLEKAKRAPRYEPRQFPFMNLGRIYIRQGQWWQALREFEGAVTAAPGD 125
[Close]
BLAST of EWM22842.1 vs. NCBI_GenBank
Match: gi|1082885128|gb|OGB94689.1| (hypothetical protein A3H39_10185 [candidate division NC10 bacterium RIFCSPLOWO2_02_FULL_66_22] >gi|1082894014|gb|OGC02720.1| hypothetical protein A3G35_12295 [candidate division NC10 bacterium RIFCSPLOWO2_12_FULL_66_18])

HSP 1 Score: 97.8265 bits (242), Expect = 1.084e-20
Identity = 56/127 (44.09%), Postives = 81/127 (63.78%), Query Frame = 0 
Query:  274 LYQMSLALYPTADARTYLAYLLSYEGALKEAKEELKEAMKQDAEFGNAWNDLGLYLWQEGRREEALKVLAEAKKKRRYQVRYKPYLNSGHIFLELGQPTSALVEYLHALHHAGPDRGREIRAVICDM 400
            LY+ SL +YPTA+A T+L +  S++G L EA EE  +A+  D +FGN +ND+G+YL Q+G  + A+  L +AKK  RY+ R  PY+N G IFL  G  T AL E+  A   A PD   E+R ++ ++
Sbjct:   32 LYKESLDVYPTAEAHTFLGWAYSFQGRLDEAIEECHKAIAADPDFGNPYNDIGVYLMQQGDLDGAIPWLEKAKKAPRYEPRQFPYMNLGRIFLRRGHWTEALREF-EAGVRAAPDDS-EMRKMLHEL 156
The following BLAST results are available for this feature:
BLAST of EWM22842.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103481|gb|EWM22842.1|0.000e+0100.00pilus assembly protein [Nannochloropsis gaditana][more]
gi|1125450200|gb|OLD76531.1|6.753e-2243.44hypothetical protein AUG87_08420 [Candidatus Rokub... [more]
gi|1125141400|gb|OLA98736.1|8.443e-2243.44hypothetical protein AUH09_07485 [Candidatus Rokub... [more]
gi|1125348783|gb|OLC88478.1|8.883e-2243.44hypothetical protein AUJ05_14175 [Candidatus Rokub... [more]
gi|1125199098|gb|OLB51727.1|1.110e-2143.44hypothetical protein AUH99_06855 [Candidatus Rokub... [more]
gi|1125151438|gb|OLB07964.1|1.156e-2143.44hypothetical protein AUH14_02270 [Candidatus Rokub... [more]
gi|1125272592|gb|OLC17587.1|2.023e-2139.04hypothetical protein AUH29_01505 [Candidatus Rokub... [more]
gi|1125397250|gb|OLD32984.1|6.025e-2139.46hypothetical protein AUI49_01475, partial [Candida... [more]
gi|1125154440|gb|OLB10710.1|8.111e-2140.98hypothetical protein AUH18_07430 [Candidatus Rokub... [more]
gi|1082885128|gb|OGB94689.1|1.084e-2044.09hypothetical protein A3H39_10185 [candidate divisi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7853rna7853Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications