EWM22841.1, cds7826 (CDS) Nannochloropsis gaditana

Overview
NameEWM22841.1
Unique Namecds7826
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:120886..120894 -
Alignment locationCM002474.1:120055..120510 -
Alignment locationCM002474.1:119726..119879 -
Alignment locationCM002474.1:119436..119535 -
Alignment locationCM002474.1:119024..119189 -
Alignment locationCM002474.1:118767..118862 -
Alignment locationCM002474.1:118485..118571 -
Alignment locationCM002474.1:118150..118269 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22841.1
Productnudix hydrolase
Orig transcript idgnl|cribi|Naga_100293g6.8347.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:120886..120894 -
CM002474.1supercontigCM002474.1:120055..120510 -
CM002474.1supercontigCM002474.1:119726..119879 -
CM002474.1supercontigCM002474.1:119436..119535 -
CM002474.1supercontigCM002474.1:119024..119189 -
CM002474.1supercontigCM002474.1:118767..118862 -
CM002474.1supercontigCM002474.1:118485..118571 -
CM002474.1supercontigCM002474.1:118150..118269 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR020084NUDIX_hydrolase_CS
IPR015797NUDIX_hydrolase_dom-like
IPR000086NUDIX_hydrolase_dom
Homology
BLAST of EWM22841.1 vs. NCBI_GenBank
Match: gi|585103480|gb|EWM22841.1| (nudix hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 809.675 bits (2090), Expect = 0.000e+0
Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 0
Query:    1 MLDRHKRLFAKDFLVRYPSVSSSPLATLCPVVPAPKETEEQSFEFPTPPQTASWINPAYMRLENSNMSLTSSSSCSTCSLPPASSTSALGAAPLRRRRRVNGVGAAAFLLGLLVGGAHAFVPAYHRKLAAAAPCAAANNKRRAGGMSGHQSVTMSAVARDSHTASVPAPPTPHTHAPHTPSPGSVAPPEQPIINQYPVFPRAAVNIVVVRARPLNMGREYLFVQRSKEPGTNQWALPGGSVEIGEEMLQAAAREVVEETTLDHTTLQFYPRCFMTTDAIYNDDMGAVKYHFVISHMVCWAAPEAAPVAADDAKDIRWMTLPQLRTLDPEAIFRGVVEVVETVERLVDVGCITKADLVRVPVAPDGSMLPSLPPTPPGMGLDDDAQGANDLIPRRM 395
            MLDRHKRLFAKDFLVRYPSVSSSPLATLCPVVPAPKETEEQSFEFPTPPQTASWINPAYMRLENSNMSLTSSSSCSTCSLPPASSTSALGAAPLRRRRRVNGVGAAAFLLGLLVGGAHAFVPAYHRKLAAAAPCAAANNKRRAGGMSGHQSVTMSAVARDSHTASVPAPPTPHTHAPHTPSPGSVAPPEQPIINQYPVFPRAAVNIVVVRARPLNMGREYLFVQRSKEPGTNQWALPGGSVEIGEEMLQAAAREVVEETTLDHTTLQFYPRCFMTTDAIYNDDMGAVKYHFVISHMVCWAAPEAAPVAADDAKDIRWMTLPQLRTLDPEAIFRGVVEVVETVERLVDVGCITKADLVRVPVAPDGSMLPSLPPTPPGMGLDDDAQGANDLIPRRM
Sbjct:    1 MLDRHKRLFAKDFLVRYPSVSSSPLATLCPVVPAPKETEEQSFEFPTPPQTASWINPAYMRLENSNMSLTSSSSCSTCSLPPASSTSALGAAPLRRRRRVNGVGAAAFLLGLLVGGAHAFVPAYHRKLAAAAPCAAANNKRRAGGMSGHQSVTMSAVARDSHTASVPAPPTPHTHAPHTPSPGSVAPPEQPIINQYPVFPRAAVNIVVVRARPLNMGREYLFVQRSKEPGTNQWALPGGSVEIGEEMLQAAAREVVEETTLDHTTLQFYPRCFMTTDAIYNDDMGAVKYHFVISHMVCWAAPEAAPVAADDAKDIRWMTLPQLRTLDPEAIFRGVVEVVETVERLVDVGCITKADLVRVPVAPDGSMLPSLPPTPPGMGLDDDAQGANDLIPRRM 395          
BLAST of EWM22841.1 vs. NCBI_GenBank
Match: gi|585101312|gb|EWM21211.1| (nudix [Nannochloropsis gaditana])

HSP 1 Score: 135.191 bits (339), Expect = 3.089e-32
Identity = 78/173 (45.09%), Postives = 101/173 (58.38%), Query Frame = 0
Query:  194 NQYPVFPRAAVNIVV-VRARPLNMGREYLFVQRSKEPGTNQWALPGGSVEIGEEMLQAAAREVVEETTLDHTTLQFYPRCFMTTDAIYNDDMGA--VKYHFVISHMVCWAAPEAA--PVAADDAKDIRWMTLPQLRTLDPEAIFRG-VVEVVETVERLVDVGCIT-KADLVRV 359
            N YP+  RAAV + +  +         Y  V+RSKEPG  +W+LPGGSVE+GEE L AAARE  EET+L    L+FYP    TTDAIY  + GA  V +H+VI+H   W    A     A DDA ++ + TL +L+ +  E +  G V +VV  VERLV  G I    DLVR+
Sbjct:  232 NAYPLHARAAVAVTIATKPSAFEKTTRYCVVKRSKEPGKGKWSLPGGSVELGEETLLAAAREAREETSLSKEDLRFYPHAVCTTDAIYRREDGARGVLFHYVITHQAAWITTGAMDRARAGDDAAELTFKTLEELKAMSLEGLLVGNVCDVVMRVERLVAKGVINIDFDLVRL 404          
BLAST of EWM22841.1 vs. NCBI_GenBank
Match: gi|873218398|emb|CEM39482.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 126.716 bits (317), Expect = 5.755e-30
Identity = 65/167 (38.92%), Postives = 97/167 (58.08%), Query Frame = 0
Query:  196 YPVFPRAAVNIVVVRARPLNMGR--EYLFVQRSKEPGTNQWALPGGSVEIGEEMLQAAAREVVEETTLDHTTLQFYPRCFMTTDAIYNDDMGAVKYHFVISHMVCWAAPEAAPVAADDAKDIRWMTLPQLRTLDPEAIF-RGVVEVVETVERLVDVGCITKADLVRV 359
            YP + RAAV++ V +   + +GR  EYL ++R KEP   +W+LPGG +++GE  L+AAARE+ EET L+ T ++ YP  F ++DAI  D     KYH++IS    WA+ +A P   DDA +  W T   L  L    +    V+  +E  E+L   GC+ ++  V V
Sbjct:   57 YPSYARAAVSVAVCKETGV-VGRRPEYLLIRRGKEPSKGKWSLPGGKIDLGETTLEAAARELKEETALNSTDVKLYPDSFYSSDAICFDSRHRCKYHYLISTFYGWASRDAKPRPMDDALEAAWFTKAALDDLHKHGMVDEAVIHAIERGEKLRQSGCLDRSRAVAV 222          
BLAST of EWM22841.1 vs. NCBI_GenBank
Match: gi|553181763|ref|XP_005853620.1| (hypothetical protein NGA_0502900, partial [Nannochloropsis gaditana CCMP526] >gi|422295440|gb|EKU22739.1| hypothetical protein NGA_0502900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 122.094 bits (305), Expect = 8.155e-29
Identity = 70/146 (47.95%), Postives = 90/146 (61.64%), Query Frame = 0
Query:  220 YLFVQRSKEPGTNQWALPGGSVEIGEEMLQAAAREVVEETTLDHTTLQFYPRCFMTTDAIYNDDMGA--VKYHFVISHMVCWAAPEAA--PVAADDAKDIRWMTLPQLRTLDPEAIFRG-VVEVVETVERLVDVGCIT-KADLVRV 359
            Y  V+RSKEPG  +W+LPGGSVE+GEE L AAARE  EET+L    L+FYP    TTDAIY  + GA    +H+VI+H   W    A     A DDA ++ + TL +L+ +  E +  G V +VV  VERLV  G I  + DLVR+
Sbjct:   89 YCVVKRSKEPGKGKWSLPGGSVELGEETLLAAAREAREETSLSKEDLRFYPHAVCTTDAIYRREDGARGFLFHYVITHQAAWITTGAMDRARAGDDAAELTFKTLEELKAMSLEGLLVGNVCDVVMRVERLVAKGVINIEFDLVRL 234          
BLAST of EWM22841.1 vs. NCBI_GenBank
Match: gi|551669247|ref|XP_005837382.1| (hypothetical protein GUITHDRAFT_151143 [Guillardia theta CCMP2712] >gi|428181539|gb|EKX50402.1| hypothetical protein GUITHDRAFT_151143 [Guillardia theta CCMP2712])

HSP 1 Score: 117.087 bits (292), Expect = 5.407e-27
Identity = 63/153 (41.18%), Postives = 88/153 (57.52%), Query Frame = 0
Query:  200 PRAAVNIVVVRARPLNMGREYLFVQRSKEPGTNQWALPGGSVEIGEEMLQAAAREVVEETTLDHTTLQFYPRCFMTTDAIYNDDMGAVK-YHFVISHMVCWAAPEAAPVAADDAKDIRWMTLPQLRTLDPEAIFRGVVEVVETVERLVDVGCI 351
            PR+AV +   R  P +   E+L ++R K P   +W+LPGGSVE+GE  + AA RE+ EET L    ++F+   FMT+DAI  D    V  +H+VI+ +     PEA  VA DDA D+ W T  ++R     A+  GV+ VVE  E L   GC+
Sbjct:   81 PRSAVAVAGCRLLP-SGETEWLLIKRGKPPSYGEWSLPGGSVELGESTIAAARRELCEETRLSSNDVKFFEDSFMTSDAIVKDARSDVTLFHYVIAQLFAEIKPEAQVVAGDDALDVGWFTKEKIRESSFGAVSPGVLRVVERAEELRRAGCL 232          
BLAST of EWM22841.1 vs. NCBI_GenBank
Match: gi|1072237566|gb|OEU22293.1| (hypothetical protein FRACYDRAFT_179351 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 107.457 bits (267), Expect = 3.265e-24
Identity = 60/166 (36.14%), Postives = 95/166 (57.23%), Query Frame = 0
Query:  198 VFPRAAVNIVVVRARPLNMGREYLFVQRSKEPGTNQWALPGGSVEIGEEMLQAAAREVVEETTLDHTTLQFYPRCFMTTDAIYNDDMGAVKY--HFVISHMVCWA---------APEAAPVAADDAKDIRWMTLPQLRTLD-PEAIFRGVVEVVETVERLVDVGCI 351
            ++PRAAV   V    P      YL V+R   P  N+W++PGG +E+GEE L AA RE+ EET +      ++   F+TTD+I  D+M +  Y  H+VI+H  C+A         +P   P  +DDA D +W++L ++++L+  E + +GV+EV+   E L  +G +
Sbjct:    2 IYPRAAVAATVQWTNPNTNLYHYLLVKRKNPPAQNKWSIPGGKIELGEETLTAAKREIEEETQIRDCL--WHSNSFLTTDSIVLDEMNSSSYAFHYVIAH--CFAKIPPTSENESPALTP--SDDALDAKWLSLEEIKSLECSEHLSKGVIEVITKAEALSTLGIL 161          
BLAST of EWM22841.1 vs. NCBI_GenBank
Match: gi|224000990|ref|XP_002290167.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973589|gb|EED91919.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 98.2117 bits (243), Expect = 2.692e-20
Identity = 69/175 (39.43%), Postives = 94/175 (53.71%), Query Frame = 0
Query:  198 VFPRAAVNIVVVRARP-------LNMGR-EYLFVQRSKEPGTNQWALPGGSVEIGEEMLQAAAREVVEETTLDH------TTLQFYPRC-FMTTDAIYNDDMGAVKYHFVISHMVCWAAPEAAPV-----AADDAKDIRWMTLPQL-RTLDPEAIFRGVVEVVETVERLVDVGCI 351
            V PRAAV+ VVVR  P       +N    +YL VQR K P    W+LPGG +E+GE  L AA RE+ EET L          L++YP   F  +D+I++     V +H+VIS   C+A  E  P+     A+DDA D RW +  ++ R  D  A+ +GV+ VVE  E L   G +
Sbjct:   36 VVPRAAVS-VVVRCAPSPSSTSDINKTSPKYLLVQRGKAPNKGMWSLPGGKIEVGEGTLDAAKRELWEETGLSTGHEPKAGVLKWYPHGPFACSDSIHHTKDSGVSFHYVISQ--CFAVIE-VPIPPKVEASDDAMDARWWSSSEMRRGEDDGAVTKGVLRVVERSEVLYSSGLL 206          
BLAST of EWM22841.1 vs. NCBI_GenBank
Match: gi|1084566429|gb|OGO23290.1| (hypothetical protein A2Z28_03315 [Chloroflexi bacterium RBG_16_51_9])

HSP 1 Score: 94.3597 bits (233), Expect = 1.134e-19
Identity = 53/143 (37.06%), Postives = 79/143 (55.24%), Query Frame = 0
Query:  196 YPVFPRAAVNIVVVRARPLNMGREYLFVQRSKEPGTNQWALPGGSVEIGEEMLQAAAREVVEETTLDHTTLQFYPRCFMTTDAIYNDDMGAVKYHFVISHMVC-WAAPEAAPVAADDAKDIRWMTLPQLRTLDPEAIFRGVVE 337
            YP  P  AV+ ++ +   +      L ++RSKEP   +W++PGG +E+GE + QA  REV EE +++        R F TT+ I  DD G VKYH+V+  M+  +A  E    A  DA++ RW+T  +L  LD     R V+E
Sbjct:   12 YPAHPTVAVSAIIFKEERV------LMIKRSKEPNKGKWSIPGGGIELGETLDQAVKREVREECSIEIEV----ERVFYTTENIIRDDDGRVKYHYVLVDMLAKYAGGETK--AQSDAEECRWVTAEELSELDITPRLRAVLE 142          
BLAST of EWM22841.1 vs. NCBI_GenBank
Match: gi|1134158175|ref|WP_076400903.1| (hypothetical protein [Insolitispirillum peregrinum])

HSP 1 Score: 92.8189 bits (229), Expect = 7.207e-19
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = 0
Query:  193 INQYPVFPRAAVNIVVVRARPLNMGREYLFVQRSKEPGTNQWALPGGSVEIGEEMLQAAAREVVEETTLD----HTTLQFYPRCFMTTDAIYNDDMGAVKYHFVISHMVC-WAAPEAAPVAADDAKDIRWMTLPQLRTLD 327
            +++YP  P+ AV  VVVR   L      L VQR   P    W  PGG + +GE +   A RE+ EET ++    H TL   P  F + D I  D +GAV+YHFV++ ++C W + +   VA DDA D  W TLP++  LD
Sbjct:    3 VSRYPRGPQPAVLAVVVREERL------LLVQRKNPPDAGCWGFPGGRLMLGETLAAGAVRELREETAVEAVARHGTL---PAAFASLDVIERDIVGAVRYHFVLTAVLCQWQSGDG--VAGDDAADCAWRTLPEILALD 131          
BLAST of EWM22841.1 vs. NCBI_GenBank
Match: gi|1131919837|emb|SIS83819.1| (ADP-ribose pyrophosphatase YjhB, NUDIX family [Insolitispirillum peregrinum])

HSP 1 Score: 93.5893 bits (231), Expect = 8.195e-19
Identity = 56/140 (40.00%), Postives = 77/140 (55.00%), Query Frame = 0
Query:  193 INQYPVFPRAAVNIVVVRARPLNMGREYLFVQRSKEPGTNQWALPGGSVEIGEEMLQAAAREVVEETTLD----HTTLQFYPRCFMTTDAIYNDDMGAVKYHFVISHMVC-WAAPEAAPVAADDAKDIRWMTLPQLRTLD 327
            +++YP  P+ AV  VVVR   L      L VQR   P    W  PGG + +GE +   A RE+ EET ++    H TL   P  F + D I  D +GAV+YHFV++ ++C W + +   VA DDA D  W TLP++  LD
Sbjct:   37 VSRYPRGPQPAVLAVVVREERL------LLVQRKNPPDAGCWGFPGGRLMLGETLAAGAVRELREETAVEAVARHGTL---PAAFASLDVIERDIVGAVRYHFVLTAVLCQWQSGDG--VAGDDAADCAWRTLPEILALD 165          
The following BLAST results are available for this feature:
BLAST of EWM22841.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103480|gb|EWM22841.1|0.000e+0100.00nudix hydrolase [Nannochloropsis gaditana][more]
gi|585101312|gb|EWM21211.1|3.089e-3245.09nudix [Nannochloropsis gaditana][more]
gi|873218398|emb|CEM39482.1|5.755e-3038.92unnamed protein product [Vitrella brassicaformis C... [more]
gi|553181763|ref|XP_005853620.1|8.155e-2947.95hypothetical protein NGA_0502900, partial [Nannoch... [more]
gi|551669247|ref|XP_005837382.1|5.407e-2741.18hypothetical protein GUITHDRAFT_151143 [Guillardia... [more]
gi|1072237566|gb|OEU22293.1|3.265e-2436.14hypothetical protein FRACYDRAFT_179351 [Fragilario... [more]
gi|224000990|ref|XP_002290167.1|2.692e-2039.43predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1084566429|gb|OGO23290.1|1.134e-1937.06hypothetical protein A2Z28_03315 [Chloroflexi bact... [more]
gi|1134158175|ref|WP_076400903.1|7.207e-1940.00hypothetical protein [Insolitispirillum peregrinum... [more]
gi|1131919837|emb|SIS83819.1|8.195e-1940.00ADP-ribose pyrophosphatase YjhB, NUDIX family [Ins... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7847rna7847Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications