EWM22880.1, cds7793 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM22880.1
Unique Name	cds7793
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002474.1:40593..40646 +
Alignment location	CM002474.1:40920..41051 +
Alignment location	CM002474.1:41389..41553 +
Alignment location	CM002474.1:41662..41718 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM22880.1
Product	26s protease regulatory subunit 7
Orig transcript id	gnl\|cribi\|Naga_100676g1.10432.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002474.1	supercontig	CM002474.1:40593..40646 +
CM002474.1	supercontig	CM002474.1:40920..41051 +
CM002474.1	supercontig	CM002474.1:41389..41553 +
CM002474.1	supercontig	CM002474.1:41662..41718 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity
GO:0000166	nucleotide binding
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0009987	cellular process
GO:0009056	catabolic process
GO:0019538	protein metabolic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **INTERPRO**
Term	Definition
IPR003960	ATPase_AAA_CS
IPR003959	ATPase_AAA_core
IPR027417	P-loop_NTPase

Homology

[Close]

BLAST of EWM22880.1 vs. NCBI_GenBank
Match: gi|585103536|gb|EWM22880.1| (26s protease regulatory subunit 7 [Nannochloropsis gaditana])

HSP 1 Score: 279.641 bits (714), Expect = 1.880e-95
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0

Query:    1 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFALPDLEGRAHILKIHTKAMNVDRDIRFEVIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFMDSVNKVIKGYQKFSATPKYMVYN 135
            MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFALPDLEGRAHILKIHTKAMNVDRDIRFEVIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFMDSVNKVIKGYQKFSATPKYMVYN
Sbjct:    1 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFALPDLEGRAHILKIHTKAMNVDRDIRFEVIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFMDSVNKVIKGYQKFSATPKYMVYN 135

[Close]

BLAST of EWM22880.1 vs. NCBI_GenBank
Match: gi|298712591|emb|CBJ33290.1| (26S proteasome regulatory ATPase subunit [Ectocarpus siliculosus])

HSP 1 Score: 268.47 bits (685), Expect = 2.834e-90
Identity = 125/135 (92.59%), Postives = 133/135 (98.52%), Query Frame = 0

Query:    1 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFALPDLEGRAHILKIHTKAMNVDRDIRFEVIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFMDSVNKVIKGYQKFSATPKYMVYN 135
            MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEF LPDLEGRAHIL IH+K+MNVDRDIR+E++ARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDF+D+VNKVIKGYQKFS+TPKYMVYN
Sbjct:   45 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHILSIHSKSMNVDRDIRYELVARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFLDAVNKVIKGYQKFSSTPKYMVYN 179

[Close]

BLAST of EWM22880.1 vs. NCBI_GenBank
Match: gi|397595021|gb|EJK56375.1| (hypothetical protein THAOC_23746 [Thalassiosira oceanica])

HSP 1 Score: 259.996 bits (663), Expect = 6.459e-87
Identity = 121/135 (89.63%), Postives = 129/135 (95.56%), Query Frame = 0

Query:    1 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFALPDLEGRAHILKIHTKAMNVDRDIRFEVIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFMDSVNKVIKGYQKFSATPKYMVYN 135
            MLQIVTELDGFD RGNIKVLMATNRPDTLDPALLRPGRLDRKVEF LPDLEGR HILKIH+K MN DRDIRFE+IARLCPNTTGAEL SVCTEAGMFAIRAR+KS+SEKDF+DSVNKV+KGY+KFS+TPKYMVYN
Sbjct:   45 MLQIVTELDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRGHILKIHSKKMNCDRDIRFELIARLCPNTTGAELHSVCTEAGMFAIRARRKSVSEKDFLDSVNKVVKGYKKFSSTPKYMVYN 179

[Close]

BLAST of EWM22880.1 vs. NCBI_GenBank
Match: gi|813227904|ref|XP_012212905.1| (hypothetical protein SPRG_18086 [Saprolegnia parasitica CBS 223.65] >gi|641519936|gb|KDO16387.1| hypothetical protein SPRG_18086 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 253.062 bits (645), Expect = 8.560e-85
Identity = 116/135 (85.93%), Postives = 130/135 (96.30%), Query Frame = 0

Query:    1 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFALPDLEGRAHILKIHTKAMNVDRDIRFEVIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFMDSVNKVIKGYQKFSATPKYMVYN 135
            MLQIVTELDGFDPRGNIKVLMATNRPDTLDPAL+RPGRLDRKVEF +P+LEGR  IL+IH K+M+ DR+IRFE+IARLCPNTTGAELRSVCTEAGM+AIRAR+KS+SEKDF++SVNKVIKGYQKFS+TPKYMVYN
Sbjct:    1 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFNVPELEGRTQILQIHAKSMSCDRNIRFELIARLCPNTTGAELRSVCTEAGMYAIRARRKSVSEKDFLESVNKVIKGYQKFSSTPKYMVYN 135

[Close]

BLAST of EWM22880.1 vs. NCBI_GenBank
Match: gi|325182701|emb|CCA17155.1| (26S proteasome subunit 7like protein putative [Albugo laibachii Nc14])

HSP 1 Score: 260.381 bits (664), Expect = 1.381e-83
Identity = 120/135 (88.89%), Postives = 131/135 (97.04%), Query Frame = 0

Query:    1 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFALPDLEGRAHILKIHTKAMNVDRDIRFEVIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFMDSVNKVIKGYQKFSATPKYMVYN 135
            MLQIVTELDGFDPRGNIKVLMATNRPDTLDPAL+RPGRLDRKVEF+LP+LEGR  IL+IH K+MN DR+IRFE+I+RLCPNTTGAELRSVCTEAGMFAIRAR+KS+SEKDF+DSVNKVIKGYQKFSATPKYMVYN
Sbjct:  304 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFSLPELEGRTQILRIHAKSMNCDRNIRFELISRLCPNTTGAELRSVCTEAGMFAIRARRKSVSEKDFLDSVNKVIKGYQKFSATPKYMVYN 438

[Close]

BLAST of EWM22880.1 vs. NCBI_GenBank
Match: gi|635361516|emb|CCI49559.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 259.61 bits (662), Expect = 3.350e-83
Identity = 119/135 (88.15%), Postives = 131/135 (97.04%), Query Frame = 0

Query:    1 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFALPDLEGRAHILKIHTKAMNVDRDIRFEVIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFMDSVNKVIKGYQKFSATPKYMVYN 135
            MLQIVTELDGFDPRGNIKVLMATNRPDTLDPAL+RPGRLDRKVEF+LP+LEGR  IL+IH K+MN DR+IRFE+I+RLCPNTTGAELRSVCTEAGMFAIRAR+KS+SEKDF+DSVNKVIKGYQKFS+TPKYMVYN
Sbjct:  307 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFSLPELEGRTQILRIHAKSMNCDRNIRFELISRLCPNTTGAELRSVCTEAGMFAIRARRKSVSEKDFLDSVNKVIKGYQKFSSTPKYMVYN 441

[Close]

BLAST of EWM22880.1 vs. NCBI_GenBank
Match: gi|1210522548|dbj|GAX18561.1| (26S proteasome regulatory subunit T1 [Fistulifera solaris])

HSP 1 Score: 256.529 bits (654), Expect = 4.946e-82
Identity = 119/135 (88.15%), Postives = 129/135 (95.56%), Query Frame = 0

Query:    1 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFALPDLEGRAHILKIHTKAMNVDRDIRFEVIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFMDSVNKVIKGYQKFSATPKYMVYN 135
            MLQIVTELDGFD RGNIKVLMATNRPDTLDPALLRPGRLDRKVEF LPDLEGR HILKIH+K MN DRDIRFE+IARLCPNTTGAEL SVCTEAGM+AIRAR+KS+SEKDF++SVNKV+KGY+KFS+TPKYMVYN
Sbjct:  313 MLQIVTELDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRGHILKIHSKRMNCDRDIRFELIARLCPNTTGAELHSVCTEAGMYAIRARRKSVSEKDFLESVNKVVKGYKKFSSTPKYMVYN 447

[Close]

BLAST of EWM22880.1 vs. NCBI_GenBank
Match: gi|1210515957|dbj|GAX25042.1| (26S proteasome regulatory subunit T1 [Fistulifera solaris])

HSP 1 Score: 256.529 bits (654), Expect = 4.946e-82
Identity = 119/135 (88.15%), Postives = 129/135 (95.56%), Query Frame = 0

Query:    1 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFALPDLEGRAHILKIHTKAMNVDRDIRFEVIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFMDSVNKVIKGYQKFSATPKYMVYN 135
            MLQIVTELDGFD RGNIKVLMATNRPDTLDPALLRPGRLDRKVEF LPDLEGR HILKIH+K MN DRDIRFE+IARLCPNTTGAEL SVCTEAGM+AIRAR+KS+SEKDF++SVNKV+KGY+KFS+TPKYMVYN
Sbjct:  313 MLQIVTELDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRGHILKIHSKRMNCDRDIRFELIARLCPNTTGAELHSVCTEAGMYAIRARRKSVSEKDFLESVNKVVKGYKKFSSTPKYMVYN 447

[Close]

BLAST of EWM22880.1 vs. NCBI_GenBank
Match: gi|953497100|emb|CEG41409.1| (26s protease regulatory subunit 7 [Plasmopara halstedii])

HSP 1 Score: 256.144 bits (653), Expect = 5.338e-82
Identity = 118/135 (87.41%), Postives = 129/135 (95.56%), Query Frame = 0

Query:    1 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFALPDLEGRAHILKIHTKAMNVDRDIRFEVIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFMDSVNKVIKGYQKFSATPKYMVYN 135
            MLQIVTELDGFDPRGNIKVLMATNRPDTLDPAL+RPGRLDRKVEF LP+LEGR  ILKIH K+MN DR IRFE+++RLCPNTTGAELRSVCTEAGMFAIRAR+KS+SEKDF+DSVNKVIKGY+KFS+TPKYMVYN
Sbjct:  304 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFNLPELEGRTQILKIHAKSMNCDRGIRFELVSRLCPNTTGAELRSVCTEAGMFAIRARRKSVSEKDFLDSVNKVIKGYKKFSSTPKYMVYN 438

[Close]

BLAST of EWM22880.1 vs. NCBI_GenBank
Match: gi|1072233301|gb|OEU18032.1| (26S proteasome subunit P45 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 256.529 bits (654), Expect = 8.620e-82
Identity = 119/135 (88.15%), Postives = 129/135 (95.56%), Query Frame = 0

Query:    1 MLQIVTELDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFALPDLEGRAHILKIHTKAMNVDRDIRFEVIARLCPNTTGAELRSVCTEAGMFAIRARKKSISEKDFMDSVNKVIKGYQKFSATPKYMVYN 135
            MLQIVTELDGFD RGNIKVLMATNRPDTLDPAL+RPGRLDRKVEF LPDLEGR HIL+IH+K MN DRDIRFE+IARLCPNTTGAEL SVCTEAGMF+IRAR+KS+SEKDF++SVNKVIKGY+KFSATPKYMVYN
Sbjct:  325 MLQIVTELDGFDARGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRGHILRIHSKRMNCDRDIRFELIARLCPNTTGAELHSVCTEAGMFSIRARRKSVSEKDFLESVNKVIKGYKKFSATPKYMVYN 459

The following BLAST results are available for this feature:

BLAST of EWM22880.1 vs. NCBI_GenBank

BLAST of EWM22880.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585103536\|gb\|EWM22880.1\|	1.880e-95	100.00	26s protease regulatory subunit 7 [Nannochloropsis...	[more]
gi\|298712591\|emb\|CBJ33290.1\|	2.834e-90	92.59	26S proteasome regulatory ATPase subunit [Ectocarp...	[more]
gi\|397595021\|gb\|EJK56375.1\|	6.459e-87	89.63	hypothetical protein THAOC_23746 [Thalassiosira oc...	[more]
gi\|813227904\|ref\|XP_012212905.1\|	8.560e-85	85.93	hypothetical protein SPRG_18086 [Saprolegnia paras...	[more]
gi\|325182701\|emb\|CCA17155.1\|	1.381e-83	88.89	26S proteasome subunit 7like protein putative [Alb...	[more]
gi\|635361516\|emb\|CCI49559.1\|	3.350e-83	88.15	unnamed protein product [Albugo candida]	[more]
gi\|1210522548\|dbj\|GAX18561.1\|	4.946e-82	88.15	26S proteasome regulatory subunit T1 [Fistulifera ...	[more]
gi\|1210515957\|dbj\|GAX25042.1\|	4.946e-82	88.15	26S proteasome regulatory subunit T1 [Fistulifera ...	[more]
gi\|953497100\|emb\|CEG41409.1\|	5.338e-82	87.41	26s protease regulatory subunit 7 [Plasmopara hals...	[more]
gi\|1072233301\|gb\|OEU18032.1\|	8.620e-82	88.15	26S proteasome subunit P45 [Fragilariopsis cylindr...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7814	rna7814	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications