EWM22889.1, cds7789 (CDS) Nannochloropsis gaditana

Overview
NameEWM22889.1
Unique Namecds7789
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:31832..33257 +
Alignment locationCM002474.1:33488..33714 +
Alignment locationCM002474.1:33901..34027 +
Alignment locationCM002474.1:34177..34495 +

Link to JBrowse

Properties
Property NameValue
End range.
End range34495
Protein idEWM22889.1
Productdna repair helicase rad25
Partialtrue
Orig transcript idgnl|cribi|Naga_100160g8.4649.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:31832..33257 +
CM002474.1supercontigCM002474.1:33488..33714 +
CM002474.1supercontigCM002474.1:33901..34027 +
CM002474.1supercontigCM002474.1:34177..34495 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0016787hydrolase activity
GO:0003677DNA binding
GO:0005524ATP binding
GO:0004003ATP-dependent DNA helicase activity
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006950response to stress
GO:0009416response to light stimulus
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
Vocabulary: INTERPRO
TermDefinition
IPR006935Helicase/UvrB_dom
IPR027417P-loop_NTPase
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR001161Helicase_Ercc3
Homology
BLAST of EWM22889.1 vs. NCBI_GenBank
Match: gi|585103547|gb|EWM22889.1| (dna repair helicase rad25, partial [Nannochloropsis gaditana])

HSP 1 Score: 1446.03 bits (3742), Expect = 0.000e+0
Identity = 699/699 (100.00%), Postives = 699/699 (100.00%), Query Frame = 0
Query:    1 MASLDGGWVVDLLPFSVPSPVPRELISTHTWNLGVKYWRGMFSSAGNGTAGVKRPRRTASSASLPSLGKNDGGSNHLPSAYGEEDENVQPFLDFSHLVLRKHHESKPLWVCPNLRIYLEAFSPLYKHAYDFLIAICEPVARPTYVHEYKLTSYSLYAAVAVNIHTEHILSTLARFSKNELPSEVVSFVRRSTETYGKAKLLLRDNEYFIEAESKEVARKLLRNEVIKSARVPLNSGGGVGGGGGGGGDGDGDFLEGEAAREMSENVEFLLVGRDEEDGDDLGPEAIHGLAASKTAIFQIAKEKVRRVKEAALTMDPPYPLMEEYDFRKDAENKALPIMLKSATKVRTYQQKSLRMMFGNGRARSGIIVLPCGAGKTLTGVTAASTIQKGVIILCNTNVSAVQWKAQFRQFAAIEEKYLVKFTSREKTLLPPEEAVVLITTYSMLAYAGKRNEEVAMILNQIKGREWGLMILDEVHVAPASSFQRVLDVVSAHAKLGLTATLVREDNLIDSLNSMIGPKLYEANWMDLTEDGYLANVQCVEAWCPMTREFFEEYLSVPDKYEGRDQKKVREVLYLMNPNKIRVCEYLMRYHEERGDKIIVFSDSVYALSKYAQLFGRDAIYGGTKESDRERLLAAFRISSRVNTIFLSRVGDTSIDLPEANVIIQISSQFGSRRQEAQRLGRILRPKQTADEGFNAFFYT 699
            MASLDGGWVVDLLPFSVPSPVPRELISTHTWNLGVKYWRGMFSSAGNGTAGVKRPRRTASSASLPSLGKNDGGSNHLPSAYGEEDENVQPFLDFSHLVLRKHHESKPLWVCPNLRIYLEAFSPLYKHAYDFLIAICEPVARPTYVHEYKLTSYSLYAAVAVNIHTEHILSTLARFSKNELPSEVVSFVRRSTETYGKAKLLLRDNEYFIEAESKEVARKLLRNEVIKSARVPLNSGGGVGGGGGGGGDGDGDFLEGEAAREMSENVEFLLVGRDEEDGDDLGPEAIHGLAASKTAIFQIAKEKVRRVKEAALTMDPPYPLMEEYDFRKDAENKALPIMLKSATKVRTYQQKSLRMMFGNGRARSGIIVLPCGAGKTLTGVTAASTIQKGVIILCNTNVSAVQWKAQFRQFAAIEEKYLVKFTSREKTLLPPEEAVVLITTYSMLAYAGKRNEEVAMILNQIKGREWGLMILDEVHVAPASSFQRVLDVVSAHAKLGLTATLVREDNLIDSLNSMIGPKLYEANWMDLTEDGYLANVQCVEAWCPMTREFFEEYLSVPDKYEGRDQKKVREVLYLMNPNKIRVCEYLMRYHEERGDKIIVFSDSVYALSKYAQLFGRDAIYGGTKESDRERLLAAFRISSRVNTIFLSRVGDTSIDLPEANVIIQISSQFGSRRQEAQRLGRILRPKQTADEGFNAFFYT
Sbjct:    1 MASLDGGWVVDLLPFSVPSPVPRELISTHTWNLGVKYWRGMFSSAGNGTAGVKRPRRTASSASLPSLGKNDGGSNHLPSAYGEEDENVQPFLDFSHLVLRKHHESKPLWVCPNLRIYLEAFSPLYKHAYDFLIAICEPVARPTYVHEYKLTSYSLYAAVAVNIHTEHILSTLARFSKNELPSEVVSFVRRSTETYGKAKLLLRDNEYFIEAESKEVARKLLRNEVIKSARVPLNSGGGVGGGGGGGGDGDGDFLEGEAAREMSENVEFLLVGRDEEDGDDLGPEAIHGLAASKTAIFQIAKEKVRRVKEAALTMDPPYPLMEEYDFRKDAENKALPIMLKSATKVRTYQQKSLRMMFGNGRARSGIIVLPCGAGKTLTGVTAASTIQKGVIILCNTNVSAVQWKAQFRQFAAIEEKYLVKFTSREKTLLPPEEAVVLITTYSMLAYAGKRNEEVAMILNQIKGREWGLMILDEVHVAPASSFQRVLDVVSAHAKLGLTATLVREDNLIDSLNSMIGPKLYEANWMDLTEDGYLANVQCVEAWCPMTREFFEEYLSVPDKYEGRDQKKVREVLYLMNPNKIRVCEYLMRYHEERGDKIIVFSDSVYALSKYAQLFGRDAIYGGTKESDRERLLAAFRISSRVNTIFLSRVGDTSIDLPEANVIIQISSQFGSRRQEAQRLGRILRPKQTADEGFNAFFYT 699          
BLAST of EWM22889.1 vs. NCBI_GenBank
Match: gi|1173944764|gb|OQR93463.1| (TFIIH basal transcription factor complex helicase XPB subunit [Thraustotheca clavata])

HSP 1 Score: 682.174 bits (1759), Expect = 0.000e+0
Identity = 340/615 (55.28%), Postives = 431/615 (70.08%), Query Frame = 0
Query:   91 FLDFSHLVLRKHHESKPLWVCPNLRIYLEAFSPLYKHAYDFLIAICEPVARPTYVHEYKLTSYSLYAAVAVNIHTEHILSTLARFSKNELPSEVVSFVRRSTETYGKAKLLLRDNEYFIEAESKEVARKLLRNEVIKSARVPLNSGGGVGGGGGGGGD--GDGDFLEGEAAREMSENVEF--LLVGRDEEDGDDLGPEAIHGLAAS--KTAIFQIAKEKVRRVKEAALTMDPPYPLMEEYDFRKDAENKALPIMLKSATKVRTYQQKSLRMMFGNGRARSGIIVLPCGAGKTLTGVTAASTIQKGVIILCNTNVSAVQWKAQFRQFAAIEEKYLVKFTSREKTLLPPEEAVVLITTYSMLAYAGKRNEEVAMILNQIKGREWGLMILDEVHVAPASSFQRVLDVVSAHAKLGLTATLVREDNLIDSLNSMIGPKLYEANWMDLTEDGYLANVQCVEAWCPMTREFFEEYLSVPDKYEGRDQKKVREVLYLMNPNKIRVCEYLMRYHEERGDKIIVFSDSVYALSKYAQLFGRDAIYGGTKESDRERLLAAFRISSRVNTIFLSRVGDTSIDLPEANVIIQISSQFGSRRQEAQRLGRILRPKQTADEGFNAFFYT 699
            + DFS L ++K H S+P+WVCPN RI+LEAFSP+YK AYDFL+AI EPV+RP ++HEYKLT YSLYAAV+V+I T+ I+  L R SKN+LP  ++ F+R  T +YGKAKL+L  NE+++E+   EV RKLL NE I+ ARV  ++            +   +G+FL+ E + E   N+++  LL+    ED D     A     AS  +T  F+I K  V +VK A L MD  YPLMEEYDFR D     + + LK  T++R YQ+KSL  MFGNGRARSGIIVLPCGAGKTLTGVTAASTI+K  + LC + VS  QW AQF+ +  I  K + +FTS  K  +  +  V+ +TTY+M+A+ G R+   A  +  I+GREWG ++LDEVHV PA  F++V+  ++ H KLGLTATLVRED+LI  LN +IGPKLYEANWMDLT+ G+LANV CVE WCPMT  F+ EYL      +  +  + R +LY+ NPNK    EYL+RYHEERGDKII+FSD V+AL  YA+   +  I+GGT E++R RLL AFR S +VN + LS+VGDTSIDLPEANVIIQ+SS FGSRRQEAQRLGRILRPK  A  GFNAFFYT
Sbjct:   72 YFDFSSLNMKKDHASRPVWVCPNGRIFLEAFSPIYKQAYDFLVAIAEPVSRPEFIHEYKLTPYSLYAAVSVSIETDSIIKVLDRLSKNQLPECIIKFIRECTTSYGKAKLVLHHNEFYVESLFPEVLRKLLENEQIRLARVKEDTETSTSAAALNMTEFTSNGEFLQKEVSAEDQANLQYQKLLM----EDYDQTTDNAAKATTASTVQTVSFRIRKTHVEQVKRACLDMD--YPLMEEYDFRNDKTIPDIEMDLKPTTRIREYQEKSLSKMFGNGRARSGIIVLPCGAGKTLTGVTAASTIKKSCLCLCTSAVSVEQWTAQFKMWTNIPSKKIARFTSVSKDEIDKDSGVI-VTTYTMVAFGGARSSASAEAMKIIQGREWGCILLDEVHVVPAKMFRKVIGSIACHCKLGLTATLVREDDLIGDLNFLIGPKLYEANWMDLTQSGFLANVSCVEVWCPMTGPFYSEYL------KDNNTARQRALLYVANPNKFSAAEYLIRYHEERGDKIILFSDDVFALQLYAKKLQKGYIFGGTSENERMRLLQAFRSSPQVNVVCLSKVGDTSIDLPEANVIIQVSSHFGSRRQEAQRLGRILRPKANASGGFNAFFYT 673          
BLAST of EWM22889.1 vs. NCBI_GenBank
Match: gi|669158796|ref|XP_008614960.1| (DNA excision repair protein ERCC-3 [Saprolegnia diclina VS20] >gi|530733319|gb|EQC31561.1| DNA excision repair protein ERCC-3 [Saprolegnia diclina VS20])

HSP 1 Score: 680.248 bits (1754), Expect = 0.000e+0
Identity = 337/611 (55.16%), Postives = 427/611 (69.89%), Query Frame = 0
Query:   91 FLDFSHLVLRKHHESKPLWVCPNLRIYLEAFSPLYKHAYDFLIAICEPVARPTYVHEYKLTSYSLYAAVAVNIHTEHILSTLARFSKNELPSEVVSFVRRSTETYGKAKLLLRDNEYFIEAESKEVARKLLRNEVIKSARVPLNSGGGVGGGGGGGGD--GDGDFLEGEAAREMSENVEFLLVGRDEEDGDDLGPEAIHGLAASKTAIFQIAKEKVRRVKEAALTMDPPYPLMEEYDFRKDAENKALPIMLKSATKVRTYQQKSLRMMFGNGRARSGIIVLPCGAGKTLTGVTAASTIQKGVIILCNTNVSAVQWKAQFRQFAAIEEKYLVKFTSREKTLLPPEEAVVLITTYSMLAYAGKRNEEVAMILNQIKGREWGLMILDEVHVAPASSFQRVLDVVSAHAKLGLTATLVREDNLIDSLNSMIGPKLYEANWMDLTEDGYLANVQCVEAWCPMTREFFEEYLSVPDKYEGRDQKKVREVLYLMNPNKIRVCEYLMRYHEERGDKIIVFSDSVYALSKYAQLFGRDAIYGGTKESDRERLLAAFRISSRVNTIFLSRVGDTSIDLPEANVIIQISSQFGSRRQEAQRLGRILRPKQTADEGFNAFFYT 699
            + DFS L L+K HES+P+WVCPN RI+LEAFSP+YK AYDFL+AI EPV+RP +VHEYKLT YSLYAAV+V+I T+ I+  L R SKN +P+ + +F+R  T +YGKAKL+L  NE+++E+   +V R LL NE I+ ARV  +             +   +G+FL+ E   E   N+++  +  ++ D    G       A  +T  F+I K  V +VK A L MD  YPLMEEYDFR D     + + LK  T++R YQ+KSL  MFGNGRARSGIIVLPCGAGKTLTGVTAASTI+K  + LC + VS  QW AQF+ +  I EK + +FTS EK  + PE  V+ +TTY+M+A+ G R  + A ++  I+ REWG ++LDEVHV PA  F++V+  ++ H KLGLTATLVRED+LI  LN +IGPKLYEANWMDLT+ G+LANV CVE WCPMT  F+ EYL      E    +K R +LY+ NPNK    EYL++YHE+RGDKI++FSD V+AL  YA   G+  IYGGT E +R RLL +FR S  VN I +S+VGDTSIDLPEANVIIQ+SS FGSRRQEAQRLGRILRPK  +  GFNAFFYT
Sbjct:   75 YFDFSALELKKDHESRPVWVCPNGRIFLEAFSPIYKQAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAVSVSIETDSIIKVLERLSKNVIPTGITTFIRDCTLSYGKAKLVLHHNEFYVESLYPQVLRTLLENEQIRLARVKEDPTDASTATAMTSNEFSSNGEFLQKEVTAEDQANMQYQKLLMEDYDQTAEGSAKSTSAATVQTVSFRIRKTHVEQVKRACLDMD--YPLMEEYDFRNDKTIPDIDMDLKPTTRIREYQEKSLSKMFGNGRARSGIIVLPCGAGKTLTGVTAASTIKKSCLCLCTSAVSVEQWTAQFKMWTTIPEKKIARFTSVEKDYIDPESGVI-VTTYTMVAFGGSRAAKSAAVMALIQSREWGCILLDEVHVVPAKMFRKVIGSIACHCKLGLTATLVREDDLIGDLNFLIGPKLYEANWMDLTQSGFLANVSCVEIWCPMTGPFYAEYLK-----ENVSARK-RALLYVANPNKFSAAEYLIQYHEKRGDKILLFSDDVFALRLYATKLGKGFIYGGTGERERMRLLQSFRTSPHVNVICISKVGDTSIDLPEANVIIQVSSHFGSRRQEAQRLGRILRPKANSTGGFNAFFYT 676          
BLAST of EWM22889.1 vs. NCBI_GenBank
Match: gi|813178006|ref|XP_012205472.1| (hypothetical protein SPRG_11271 [Saprolegnia parasitica CBS 223.65] >gi|641529678|gb|KDO23839.1| hypothetical protein SPRG_11271 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 679.093 bits (1751), Expect = 0.000e+0
Identity = 338/612 (55.23%), Postives = 428/612 (69.93%), Query Frame = 0
Query:   91 FLDFSHLVLRKHHESKPLWVCPNLRIYLEAFSPLYKHAYDFLIAICEPVARPTYVHEYKLTSYSLYAAVAVNIHTEHILSTLARFSKNELPSEVVSFVRRSTETYGKAKLLLRDNEYFIEAESKEVARKLLRNEVIKSARV---PLNSGGGVGGGGGGGGDGDGDFLEGEAAREMSENVEFLLVGRDEEDGDDLGPEAIHGLAASKTAIFQIAKEKVRRVKEAALTMDPPYPLMEEYDFRKDAENKALPIMLKSATKVRTYQQKSLRMMFGNGRARSGIIVLPCGAGKTLTGVTAASTIQKGVIILCNTNVSAVQWKAQFRQFAAIEEKYLVKFTSREKTLLPPEEAVVLITTYSMLAYAGKRNEEVAMILNQIKGREWGLMILDEVHVAPASSFQRVLDVVSAHAKLGLTATLVREDNLIDSLNSMIGPKLYEANWMDLTEDGYLANVQCVEAWCPMTREFFEEYLSVPDKYEGRDQKKVREVLYLMNPNKIRVCEYLMRYHEERGDKIIVFSDSVYALSKYAQLFGRDAIYGGTKESDRERLLAAFRISSRVNTIFLSRVGDTSIDLPEANVIIQISSQFGSRRQEAQRLGRILRPKQTADEGFNAFFYT 699
            + DFS L L+K HES+P+WVCPN RI+LEAFSP+YK AYDFL+AI EPV+RP +VHEYKLT YSLYAAV+V+I T+ I+  L R SKN +P+ + +F+R  T +YGKAKL+L  NE+++E+   +V R LL NE I+ ARV   P ++              +G+FL+ E   E   N+++  +  ++ D    G       A  +T  F+I K  V +VK A L MD  YPLMEEYDFR D     + + LK  T++R YQ+KSL  MFGNGRARSGIIVLPCGAGKTLTGVTAASTI+K  + LC + VS  QW AQF+ +  I EK + +FTS EK  + PE  V+ +TTY+M+A+ G R  + A ++  I+ REWG ++LDEVHV PA  F++V+  ++ H KLGLTATLVRED+LI  LN +IGPKLYEANWMDLT+ G+LANV CVE WCPMT  F+ EYL      E    +K R +LY+ NPNK    EYL++YHE+RGDKI++FSD V+AL  YA   G+  IYGGT E +R RLL +FR S  VN I +S+VGDTSIDLPEANVIIQ+SS FGSRRQEAQRLGRILRPK  +  GFNAFFYT
Sbjct:   75 YFDFSALELKKDHESRPVWVCPNGRIFLEAFSPIYKQAYDFLVAIAEPVSRPEFVHEYKLTPYSLYAAVSVSIETDSIIKVLERLSKNVIPTGITTFIRDCTLSYGKAKLVLHHNEFYVESLYPQVLRTLLENEQIRLARVKEDPTDTSTATAMTSNEFS-SNGEFLQKEVTAEDQANMQYQKLLMEDYDQTAEGSAKSTSAATVQTVSFRIRKTHVEQVKRACLDMD--YPLMEEYDFRNDKTIPDIDMDLKPTTRIREYQEKSLSKMFGNGRARSGIIVLPCGAGKTLTGVTAASTIKKSCLCLCTSAVSVEQWTAQFKMWTTIPEKKIARFTSVEKDYIDPESGVI-VTTYTMVAFGGNRAAKSAAVMALIQSREWGCILLDEVHVVPAKMFRKVIGSIACHCKLGLTATLVREDDLIGDLNFLIGPKLYEANWMDLTQSGFLANVSCVEIWCPMTGPFYAEYLK-----ENVSARK-RALLYVANPNKFSAAEYLIQYHEKRGDKILLFSDDVFALRLYATKLGKGFIYGGTGERERMRLLQSFRTSPHVNVICISKVGDTSIDLPEANVIIQVSSHFGSRRQEAQRLGRILRPKANSTGGFNAFFYT 676          
BLAST of EWM22889.1 vs. NCBI_GenBank
Match: gi|223999873|ref|XP_002289609.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220974817|gb|EED93146.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 675.626 bits (1742), Expect = 0.000e+0
Identity = 346/618 (55.99%), Postives = 429/618 (69.42%), Query Frame = 0
Query:   93 DFSHLVLRKHHESKPLWVCPNLRIYLEAFSPLYKHAYDFLIAICEPVARPTYVHEYKLTSYSLYAAVAVNIHTEHILSTLARFSKNELPSEVVSFVRRSTETYGKAKLLLRDNEYFIEAESKEVARKLLRNEVIKSARV-----PLNSGGGVGGGGGGGGDGDGDFLEGEAAREMSENVEFLLVGRDEEDGDDLGPEAIHGLAASKTAIFQIAKEKVRRVKEAALTMDPPYPLMEEYDFRKDAENKALPIMLKSATKVRTYQQKSLRMMFGNGRARSGIIVLPCGAGKTLTGVTAASTIQKGVIILCNTNVSAVQWKAQFRQFAAIEEKYLVKFTSREKTLLPPEEAVVLITTYSMLAYAGKRNEEVAMILNQIKGREWGLMILDEVHVAPASSFQRVLDVVSAHAKLGLTATLVREDNLIDSLNSMIGPKLYEANWMDLTEDGYLANVQCVEAWCPMTREFFEEYLSVPDKYEGRDQKKVREVLYLMNPNKIRVCEYLMRYHEERGDKIIVFSDSVYALSKYAQLFGRDAIYGGTKESDRERLLAAFRISSRVNTIFLSRVGDTSIDLPEANVIIQISSQFGSRRQEAQRLGRILRPKQ-TADEG-----FNAFFYT 699
            DFS L L+  H S+P W CP+  IYLEAF  LY  AYDFL+AI EPVARP Y+HEYKLT YSLYAAVA NI TE I+  L RFSKN LP  V +F+R  T+ YGKAKL+L+ N++++E+E   V R+LLR+++I  ARV     P ++ GGVGG     G     F+    A EM EN+       D+E+G     +    L A  T  FQI  E V  VK  A+ +D  YPLMEEYDFR D  N  +P+ LK  T++R YQ++SL  MFGNGRARSGIIVLPCGAGKTLTGVTAA TI+K V+ LC   VS +QWK QF+ +  I ++ +  FTS +K  + P    VLITTY+M++Y G+R+++ A ++N I+ REWGL+++DEVHV PA  F+RV+  V AH +LGLTATLVRED+LI  LN +IGPKLYEANWMDLT  GYLANVQCVE W PMT  F  EYL         D  +++++LY+MNP+K+R  E+LMR+HEERGDKIIVFSD VY+L  YA +  R  IYG T E +R+ +L  FR S  + TI +S+VGDTSIDLPEANVIIQ+SS FGSRRQEAQRLGRILRPK  T  +G     FNAFFYT
Sbjct:    1 DFSDLTLKSDHISRPCWTCPDGTIYLEAFHDLYTKAYDFLVAISEPVARPEYLHEYKLTPYSLYAAVATNIETESIVKVLNRFSKNVLPDGVAAFIRECTKRYGKAKLVLKHNKFYVESEHPAVLRELLRDDLISQARVAEDVNPDDATGGVGGTSNADG-----FVVHTKAEEMEENLH------DDEEGGSKSSK----LQAKTTVSFQIKGESVEVVKRRAIDLD--YPLMEEYDFRNDKVNPDVPMDLKPHTRIRRYQERSLSKMFGNGRARSGIIVLPCGAGKTLTGVTAAQTIKKSVVCLCTNAVSVLQWKYQFKLWTNIPDENICVFTSDKKEDINP-GGCVLITTYTMISYGGQRSDKSAEVMNIIRSREWGLLLMDEVHVVPAKMFRRVIGSVKAHCRLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTTQGYLANVQCVEVWTPMTGPFMREYLMA-------DNARLKQLLYVMNPSKLRAAEFLMRFHEERGDKIIVFSDLVYSLKLYAAMLKRPMIYGETSERERQAILGTFRTSDALRTICISKVGDTSIDLPEANVIIQVSSHFGSRRQEAQRLGRILRPKSYTQTDGSNRSSFNAFFYT 593          
BLAST of EWM22889.1 vs. NCBI_GenBank
Match: gi|325189336|emb|CCA23856.1| (DNA excision repair crosscomplementing protein similar to human Xeroderma pigmentosum group B DNA repair protein putative [Albugo laibachii Nc14])

HSP 1 Score: 673.315 bits (1736), Expect = 0.000e+0
Identity = 338/629 (53.74%), Postives = 433/629 (68.84%), Query Frame = 0
Query:   75 NHLPSAYGEE-DENVQPFLDFSHLVLRKHHESKPLWVCPNLRIYLEAFSPLYKHAYDFLIAICEPVARPTYVHEYKLTSYSLYAAVAVNIHTEHILSTLARFSKNELPSEVVSFVRRSTETYGKAKLLLRDNEYFIEAESKEVARKLLRNEVIKSARVPLNSGGGVGGGGGGGGDGDGDFLEGEAAREMSENVEFLLVGRDEEDGDDLGPEAIHGLAASK---TAIFQIAKEKVRRVKEAALTMDPPYPLMEEYDFRKDAENKALPIMLKSATKVRTYQQKSLRMMFGNGRARSGIIVLPCGAGKTLTGVTAASTIQKGVIILCNTNVSAVQWKAQFRQFAAIEEKYLVKFTSREKTLLPPEEAVVLITTYSMLAYAGKRNEEVAMILNQIKGREWGLMILDEVHVAPASSFQRVLDVVSAHAKLGLTATLVREDNLIDSLNSMIGPKLYEANWMDLTEDGYLANVQCVEAWCPMTREFFEEYLSVPDKYEGRDQKKVREVLYLMNPNKIRVCEYLMRYHEERGDKIIVFSDSVYALSKYAQLFGRDAIYGGTKESDRERLLAAFRISSRVNTIFLSRVGDTSIDLPEANVIIQISSQFGSRRQEAQRLGRILRPKQTADEGFNAFFYT 699
            N LP +  ++ D+   P+ DF++L ++  H S+P+WVCPN RI+LEAFSP+YK AYDFL+AI EPV+RP ++HEYKLT YSLYAAV+V+I TE +L+ L R SKN LP  +  F++  T +YGKAKL+L  NE+++E+   +V +KLL +E I+ AR+      G   G       D  F+E E   E   N++F  +  ++ D +D       G AA K   T   +I K  V  VK A L +D  YPLMEEYDFR D     + + LK  T++R YQ+KSL  MFGNGRARSGIIVLPCGAGKTLTGVTAASTI+K  + LC + VS  QW +QF+ +  I E  + +FTS  K  + P   V+ +TTY+M+A+ GKR      ++  I+GREWG ++LDEVHV PA  F++V+  ++ H KLGLTATLVRED+LI  LN +IGPKLYEANWMDLT+ G+LANV CVE WCPMT EF+ EYL      E ++ +K R +LY+ NPNK    E+L++YHE+RGDKI+VFSD V+AL  YA    +  IYGGT E +R RLL +FR S  VN I +S+VGDTSIDLPEANVIIQ+SS FGSRRQEAQRLGRILRPK  A  GFNAFFYT
Sbjct:   64 NQLPQSKNDQTDDATAPYFDFANLQMKPDHASRPVWVCPNGRIFLEAFSPIYKQAYDFLVAIAEPVSRPEFLHEYKLTPYSLYAAVSVSIETESVLNVLERLSKNNLPPVITQFIQDCTVSYGKAKLVLHHNEFYVESLYPQVLQKLLSHEPIRLARI--RETEGPAAGTKSTTMNDEGFIEKEVMAEDQANLQFQKLLNEDFDAEDEQRITTQGGAAPKTVRTVSVKIRKSMVENVKRACLDLD--YPLMEEYDFRNDKTIPDIEMDLKPTTRIREYQEKSLSKMFGNGRARSGIIVLPCGAGKTLTGVTAASTIKKSCLCLCTSAVSVEQWTSQFKMWTNIPESKIARFTSVAKDYIDPNSGVI-VTTYTMIAFGGKRARASEEVMQLIQGREWGSLLLDEVHVVPAKMFRKVIGSIACHCKLGLTATLVREDDLIGDLNFLIGPKLYEANWMDLTQSGFLANVSCVEVWCPMTGEFYREYLK-----ENKNARK-RALLYVANPNKFTAAEFLIQYHEKRGDKILVFSDDVFALRLYATKLNKGYIYGGTGERERMRLLQSFRNSPLVNVICISKVGDTSIDLPEANVIIQVSSHFGSRRQEAQRLGRILRPKANATGGFNAFFYT 681          
BLAST of EWM22889.1 vs. NCBI_GenBank
Match: gi|1173953588|gb|OQS01120.1| (TFIIH basal transcription factor complex helicase XPB subunit [Achlya hypogyna])

HSP 1 Score: 671.774 bits (1732), Expect = 0.000e+0
Identity = 337/618 (54.53%), Postives = 426/618 (68.93%), Query Frame = 0
Query:   91 FLDFSHLVLRKHHESKPLWVCPNLRIYLEAFSPLYKHAYDFLIAICEPVARPTYVHEYKLTSYSLYAAVAVNIHTEHILSTLARFSKNELPSEVVSFVRRSTETYGKAKLLLRDNEYFIEAESKEVARKLLRNEVIKSARV---------PLNSGGGVGGGGGGGGDGDGDFLEGEAAREMSENVEFLLVGRDEEDGDDLGPEAIHGLAASKTAIFQIAKEKVRRVKEAALTMDPPYPLMEEYDFRKDAENKALPIMLKSATKVRTYQQKSLRMMFGNGRARSGIIVLPCGAGKTLTGVTAASTIQKGVIILCNTNVSAVQWKAQFRQFAAIEEKYLVKFTSREKTLLPPEEAVVLITTYSMLAYAGKRNEEVAMILNQIKGREWGLMILDEVHVAPASSFQRVLDVVSAHAKLGLTATLVREDNLIDSLNSMIGPKLYEANWMDLTEDGYLANVQCVEAWCPMTREFFEEYLSVPDKYEGRDQKKVREVLYLMNPNKIRVCEYLMRYHEERGDKIIVFSDSVYALSKYAQLFGRDAIYGGTKESDRERLLAAFRISSRVNTIFLSRVGDTSIDLPEANVIIQISSQFGSRRQEAQRLGRILRPKQTADEGFNAFFYT 699
            + DFS L L+K HES+P+WVCPN RI+LEAFSP+YK AYDFL+AI EPV+RP ++HEYKLT YSLYAAV+V+I T+ I+  L R SKN +P+ + +F+R  T +YGKAKL+L  NE+++E+   +V R LL NE I+ ARV         P                 +G+FL+ E   E   N+++  +  ++ D    G  A    A  +T  F+I K  V  VK A L MD  YPLMEEYDFR D     + + LK  T++R YQ+KSL  MFGNGRARSGIIVLPCGAGKTLTGVTAASTI+K  + LC + VS  QW  QF+ +  I EK + +FTS EK  + PE  V+ +TTY+M+A+ G R  + A ++  I+ REWG ++LDEVHV PA  F++V+  ++ H KLGLTATLVRED+LI  LN +IGPKLYEANWMDLT+ G+LANV CVE WCPMT  F+ EYL      E    +K R +LY+ NPNK    EYL++YHE+RGDKI++FSD V+AL  YA   G+  IYGGT E +R RLL +FR+S  VN I +S+VGDTSIDLPEANVIIQ+SS FGSRRQEAQRLGRILRPK  +  GFNAFFYT
Sbjct:   74 YFDFSALELKKDHESRPVWVCPNGRIFLEAFSPIYKQAYDFLVAIAEPVSRPEFLHEYKLTPYSLYAAVSVSIETDSIIKVLERLSKNIIPTCITTFIRDCTLSYGKAKLVLHHNEFYVESLYPQVLRTLLENEQIRLARVKEEPTDTCTPTIFPATATAMTSNEFASNGEFLQKEVTAEDQANMQYQKLLMEDYDQTAEGT-ATKAAATVQTVSFRIRKTHVESVKRACLDMD--YPLMEEYDFRNDKTIPDIDMDLKPTTRIREYQEKSLSKMFGNGRARSGIIVLPCGAGKTLTGVTAASTIKKSCLCLCTSAVSVEQWTQQFKMWTTIPEKKIARFTSVEKDYIDPESGVI-VTTYTMVAFGGNRAAKSAAVMALIQSREWGCILLDEVHVVPAKMFRKVIGSIACHCKLGLTATLVREDDLIGDLNFLIGPKLYEANWMDLTQSGFLANVSCVEVWCPMTGPFYAEYLK-----ENVSARK-RALLYVANPNKFSAAEYLIQYHEKRGDKILLFSDDVFALRLYATKLGKGFIYGGTGERERMRLLQSFRMSPHVNVICISKVGDTSIDLPEANVIIQVSSHFGSRRQEAQRLGRILRPKANSTGGFNAFFYT 681          
BLAST of EWM22889.1 vs. NCBI_GenBank
Match: gi|698790078|ref|XP_009828071.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574116919|gb|ETV82402.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 669.463 bits (1726), Expect = 0.000e+0
Identity = 336/619 (54.28%), Postives = 429/619 (69.31%), Query Frame = 0
Query:   83 EEDENVQPFLDFSHLVLRKHHESKPLWVCPNLRIYLEAFSPLYKHAYDFLIAICEPVARPTYVHEYKLTSYSLYAAVAVNIHTEHILSTLARFSKNELPSEVVSFVRRSTETYGKAKLLLRDNEYFIEAESKEVARKLLRNEVIKSARVPLNSGGGVGGGGGGGGDGDGDFLEGEAAREMSENVEF--LLVGRDEEDGDDLGPEAIHGLAASKTAIFQIAKEKVRRVKEAALTMDPPYPLMEEYDFRKDAENKALPIMLKSATKVRTYQQKSLRMMFGNGRARSGIIVLPCGAGKTLTGVTAASTIQKGVIILCNTNVSAVQWKAQFRQFAAIEEKYLVKFTSREKTLLPPEEAVVLITTYSMLAYAGKRNEEVAMILNQIKGREWGLMILDEVHVAPASSFQRVLDVVSAHAKLGLTATLVREDNLIDSLNSMIGPKLYEANWMDLTEDGYLANVQCVEAWCPMTREFFEEYLSVPDKYEGRDQKKVREVLYLMNPNKIRVCEYLMRYHEERGDKIIVFSDSVYALSKYAQLFGRDAIYGGTKESDRERLLAAFRISSRVNTIFLSRVGDTSIDLPEANVIIQISSQFGSRRQEAQRLGRILRPKQTADEGFNAFFYT 699
            E D     + DFS L ++  H S+P+WVCPN RI+LEAFSPLYK AYDFL+AI EPV+RP ++HEYKLT YSLYAAV+V+I TE I+  L R SKN LP  +V F++  T +YGKAKL+L  NEY++E+   +V ++LL  E I+ ARV  +    +G G     +  G+FL+ E + E   N ++  LL+   ++  D    +A       +T  F+I K  V +VK A L +D  +PLMEEYDFR D     + + LK  T++R YQ+KSL  MFGNGRARSGIIVLPCGAGKTLTGVTAASTI+K  + LC + VS  QW AQF+ + +I EK + +FTS  K  + P   V+ +TTY+M+A+ G R  + A +++ I+ REWG ++LDEVHV PA  F++V+  ++ H KLGLTATLVRED+LI  LN +IGPKLYEANWMDLT+ G+LANV CVE WCPMT  F+ EYL      E    +K R +LY+ NPNK    EYL++YHE+RGDKI++FSD V+AL  YA    +  IYGGT E +R RLL +FR S  VN I +S+VGDTSIDLPEANVIIQ+SS FGSRRQEAQRLGRILRPK  A  GFNAFFYT
Sbjct:   61 ESDSGNSQYQDFSSLKMKNDHASRPVWVCPNGRIFLEAFSPLYKQAYDFLVAISEPVSRPEFLHEYKLTPYSLYAAVSVSIETESIVKVLERLSKNHLPLVIVQFIKECTASYGKAKLVLHHNEYYVESLYPKVLKRLLEEESIRLARVKEDV---LGAGAASTYNATGEFLQKEISAEDQANKQYEQLLMEDYDQTEDQQRAKAAAAATTVQTVSFRIRKTHVEQVKRACLDID--FPLMEEYDFRNDKSIPDIDMDLKPTTRIREYQEKSLSKMFGNGRARSGIIVLPCGAGKTLTGVTAASTIKKSCLCLCTSAVSVEQWTAQFKMWTSIPEKKIARFTSVAKDYIDPVSGVI-VTTYTMVAFGGNRAAQSAAVMDIIQSREWGCILLDEVHVVPAKMFRKVIGSIACHCKLGLTATLVREDDLIGDLNFLIGPKLYEANWMDLTQSGFLANVSCVEVWCPMTGPFYAEYLK-----ENVSARK-RALLYVANPNKFSAAEYLIKYHEDRGDKILLFSDDVFALRLYATKLQKGFIYGGTGERERMRLLQSFRSSPHVNVICISKVGDTSIDLPEANVIIQVSSHFGSRRQEAQRLGRILRPKANATGGFNAFFYT 667          
BLAST of EWM22889.1 vs. NCBI_GenBank
Match: gi|698790076|ref|XP_009828070.1| (hypothetical protein H257_05051 [Aphanomyces astaci] >gi|574116918|gb|ETV82401.1| hypothetical protein H257_05051 [Aphanomyces astaci])

HSP 1 Score: 669.463 bits (1726), Expect = 0.000e+0
Identity = 336/619 (54.28%), Postives = 429/619 (69.31%), Query Frame = 0
Query:   83 EEDENVQPFLDFSHLVLRKHHESKPLWVCPNLRIYLEAFSPLYKHAYDFLIAICEPVARPTYVHEYKLTSYSLYAAVAVNIHTEHILSTLARFSKNELPSEVVSFVRRSTETYGKAKLLLRDNEYFIEAESKEVARKLLRNEVIKSARVPLNSGGGVGGGGGGGGDGDGDFLEGEAAREMSENVEF--LLVGRDEEDGDDLGPEAIHGLAASKTAIFQIAKEKVRRVKEAALTMDPPYPLMEEYDFRKDAENKALPIMLKSATKVRTYQQKSLRMMFGNGRARSGIIVLPCGAGKTLTGVTAASTIQKGVIILCNTNVSAVQWKAQFRQFAAIEEKYLVKFTSREKTLLPPEEAVVLITTYSMLAYAGKRNEEVAMILNQIKGREWGLMILDEVHVAPASSFQRVLDVVSAHAKLGLTATLVREDNLIDSLNSMIGPKLYEANWMDLTEDGYLANVQCVEAWCPMTREFFEEYLSVPDKYEGRDQKKVREVLYLMNPNKIRVCEYLMRYHEERGDKIIVFSDSVYALSKYAQLFGRDAIYGGTKESDRERLLAAFRISSRVNTIFLSRVGDTSIDLPEANVIIQISSQFGSRRQEAQRLGRILRPKQTADEGFNAFFYT 699
            E D     + DFS L ++  H S+P+WVCPN RI+LEAFSPLYK AYDFL+AI EPV+RP ++HEYKLT YSLYAAV+V+I TE I+  L R SKN LP  +V F++  T +YGKAKL+L  NEY++E+   +V ++LL  E I+ ARV  +    +G G     +  G+FL+ E + E   N ++  LL+   ++  D    +A       +T  F+I K  V +VK A L +D  +PLMEEYDFR D     + + LK  T++R YQ+KSL  MFGNGRARSGIIVLPCGAGKTLTGVTAASTI+K  + LC + VS  QW AQF+ + +I EK + +FTS  K  + P   V+ +TTY+M+A+ G R  + A +++ I+ REWG ++LDEVHV PA  F++V+  ++ H KLGLTATLVRED+LI  LN +IGPKLYEANWMDLT+ G+LANV CVE WCPMT  F+ EYL      E    +K R +LY+ NPNK    EYL++YHE+RGDKI++FSD V+AL  YA    +  IYGGT E +R RLL +FR S  VN I +S+VGDTSIDLPEANVIIQ+SS FGSRRQEAQRLGRILRPK  A  GFNAFFYT
Sbjct:   61 ESDSGNSQYQDFSSLKMKNDHASRPVWVCPNGRIFLEAFSPLYKQAYDFLVAISEPVSRPEFLHEYKLTPYSLYAAVSVSIETESIVKVLERLSKNHLPLVIVQFIKECTASYGKAKLVLHHNEYYVESLYPKVLKRLLEEESIRLARVKEDV---LGAGAASTYNATGEFLQKEISAEDQANKQYEQLLMEDYDQTEDQQRAKAAAAATTVQTVSFRIRKTHVEQVKRACLDID--FPLMEEYDFRNDKSIPDIDMDLKPTTRIREYQEKSLSKMFGNGRARSGIIVLPCGAGKTLTGVTAASTIKKSCLCLCTSAVSVEQWTAQFKMWTSIPEKKIARFTSVAKDYIDPVSGVI-VTTYTMVAFGGNRAAQSAAVMDIIQSREWGCILLDEVHVVPAKMFRKVIGSIACHCKLGLTATLVREDDLIGDLNFLIGPKLYEANWMDLTQSGFLANVSCVEVWCPMTGPFYAEYLK-----ENVSARK-RALLYVANPNKFSAAEYLIKYHEDRGDKILLFSDDVFALRLYATKLQKGFIYGGTGERERMRLLQSFRSSPHVNVICISKVGDTSIDLPEANVIIQVSSHFGSRRQEAQRLGRILRPKANATGGFNAFFYT 667          
BLAST of EWM22889.1 vs. NCBI_GenBank
Match: gi|673026466|ref|XP_008867194.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574477241|gb|ETW04238.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 668.307 bits (1723), Expect = 0.000e+0
Identity = 335/620 (54.03%), Postives = 429/620 (69.19%), Query Frame = 0
Query:   83 EEDENVQPFLDFSHLVLRKHHESKPLWVCPNLRIYLEAFSPLYKHAYDFLIAICEPVARPTYVHEYKLTSYSLYAAVAVNIHTEHILSTLARFSKNELPSEVVSFVRRSTETYGKAKLLLRDNEYFIEAESKEVARKLLRNEVIKSARVPLNSGGGVGGGGGGGGDGDGDFLEGEAAREMSENVEF---LLVGRDEEDGDDLGPEAIHGLAASKTAIFQIAKEKVRRVKEAALTMDPPYPLMEEYDFRKDAENKALPIMLKSATKVRTYQQKSLRMMFGNGRARSGIIVLPCGAGKTLTGVTAASTIQKGVIILCNTNVSAVQWKAQFRQFAAIEEKYLVKFTSREKTLLPPEEAVVLITTYSMLAYAGKRNEEVAMILNQIKGREWGLMILDEVHVAPASSFQRVLDVVSAHAKLGLTATLVREDNLIDSLNSMIGPKLYEANWMDLTEDGYLANVQCVEAWCPMTREFFEEYLSVPDKYEGRDQKKVREVLYLMNPNKIRVCEYLMRYHEERGDKIIVFSDSVYALSKYAQLFGRDAIYGGTKESDRERLLAAFRISSRVNTIFLSRVGDTSIDLPEANVIIQISSQFGSRRQEAQRLGRILRPKQTADEGFNAFFYT 699
            E D +   + DFS L ++  H S+P+WVCPN RI+LEAFSPLYK AYDFL+AI EPV+RP ++HEYKLT YSLYAAV+V+I TE I+  L R SKN +P  ++ F++  T +YGKAKL+L  NEY++E+    V ++LL  E I+ ARV  +    +G G     +  G+FL+ E + E   N ++   L+   D+ +       A    A  +T  F+I K +V +VK A L +D  +PLMEEYDFR D     + + LK  T++R YQ+KSL  MFGNGRARSGIIVLPCGAGKTLTGVTAASTI+K  + LC + VS  QW AQF+ + +I EK + +FTS  K  + P   V+ +TTY+M+A+ G R  + A +++ I+ REWG ++LDEVHV PA  F++V+  ++ H KLGLTATLVRED+LI  LN +IGPKLYEANWMDLT+ G+LANV CVE WCPMT  F+ EYL      E    +K R +LY+ NPNK    EYL++YHEERGDKI++FSD V+AL  YA    +  IYGGT E +R RLL +FR S  VN I +S+VGDTSIDLPEANVIIQ+SS FGSRRQEAQRLGRILRPK  A  GFNAFFYT
Sbjct:   60 ESDSSNSEYHDFSSLKMKPDHPSRPVWVCPNGRIFLEAFSPLYKQAYDFLVAISEPVSRPEFLHEYKLTPYSLYAAVSVSIETESIVKVLERLSKNHVPQVIIQFIKECTASYGKAKLVLHHNEYYVESLYPNVLKRLLEEESIRRARVKDDL---LGAGASTTYNATGEFLQKEISAEDQANKQYEQLLMEDYDQTEDQQRAKAAATSAATVQTVSFRIRKTQVEQVKRACLDID--FPLMEEYDFRNDKSIPDIDMDLKPTTRIREYQEKSLSKMFGNGRARSGIIVLPCGAGKTLTGVTAASTIKKSCLCLCTSAVSVEQWTAQFKMWTSIPEKKIARFTSVAKDYIDPVSGVI-VTTYTMVAFGGNRAAQSAAVMDIIQSREWGCILLDEVHVVPAKMFRKVIGSIACHCKLGLTATLVREDDLIGDLNFLIGPKLYEANWMDLTQSGFLANVSCVEVWCPMTGPFYAEYLK-----ENVSARK-RALLYVANPNKFSAAEYLIKYHEERGDKILLFSDDVFALRLYATKLQKGFIYGGTGERERMRLLQSFRSSPHVNVICISKVGDTSIDLPEANVIIQVSSHFGSRRQEAQRLGRILRPKANATGGFNAFFYT 667          
The following BLAST results are available for this feature:
BLAST of EWM22889.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103547|gb|EWM22889.1|0.000e+0100.00dna repair helicase rad25, partial [Nannochloropsi... [more]
gi|1173944764|gb|OQR93463.1|0.000e+055.28TFIIH basal transcription factor complex helicase ... [more]
gi|669158796|ref|XP_008614960.1|0.000e+055.16DNA excision repair protein ERCC-3 [Saprolegnia di... [more]
gi|813178006|ref|XP_012205472.1|0.000e+055.23hypothetical protein SPRG_11271 [Saprolegnia paras... [more]
gi|223999873|ref|XP_002289609.1|0.000e+055.99predicted protein, partial [Thalassiosira pseudona... [more]
gi|325189336|emb|CCA23856.1|0.000e+053.74DNA excision repair crosscomplementing protein sim... [more]
gi|1173953588|gb|OQS01120.1|0.000e+054.53TFIIH basal transcription factor complex helicase ... [more]
gi|698790078|ref|XP_009828071.1|0.000e+054.28hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|698790076|ref|XP_009828070.1|0.000e+054.28hypothetical protein H257_05051 [Aphanomyces astac... [more]
gi|673026466|ref|XP_008867194.1|0.000e+054.03hypothetical protein, variant [Aphanomyces invadan... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7810rna7810Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications