EWM29896.1, cds777 (CDS) Nannochloropsis gaditana

Overview
NameEWM29896.1
Unique Namecds777
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:389562..390233 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29896.1
ProductFumarylacetoacetase
Orig transcript idgnl|cribi|Naga_100035g38.3360.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:389562..390233 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR002529Fumarylacetoacetase_C
IPR011234Fumarylacetoacetase_C-rel
Homology
BLAST of EWM29896.1 vs. NCBI_GenBank
Match: gi|553196503|ref|XP_005856360.1| (fumarylacetoacetate hydrolase domain-containing protein 1 [Nannochloropsis gaditana CCMP526] >gi|422292698|gb|EKU20000.1| fumarylacetoacetate hydrolase domain-containing protein 1 [Nannochloropsis gaditana CCMP526] >gi|585112479|gb|EWM29896.1| Fumarylacetoacetase [Nannochloropsis gaditana])

HSP 1 Score: 459.529 bits (1181), Expect = 9.860e-164
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query:    1 MASLATSAIRASLINHGKKIIGVGKNYAMHIKEMGGQAPKAPVLFLKPTTSYVFEGSPIRLNPKVGTVHHEVEMAVVIDKIARKISPEMALQFVGGYALAIDLTARDVQEEAKKQGLPWTVAKGQDSFCPISNMIAKADVPDPDNVGLWLKVNGEPRQRSNTKHMIHPTAFLVSYISHLFTLEPGDVILTGTPEGVGPINVGDTVTAGIEGLMQMKFDVEADT 223
            MASLATSAIRASLINHGKKIIGVGKNYAMHIKEMGGQAPKAPVLFLKPTTSYVFEGSPIRLNPKVGTVHHEVEMAVVIDKIARKISPEMALQFVGGYALAIDLTARDVQEEAKKQGLPWTVAKGQDSFCPISNMIAKADVPDPDNVGLWLKVNGEPRQRSNTKHMIHPTAFLVSYISHLFTLEPGDVILTGTPEGVGPINVGDTVTAGIEGLMQMKFDVEADT
Sbjct:    1 MASLATSAIRASLINHGKKIIGVGKNYAMHIKEMGGQAPKAPVLFLKPTTSYVFEGSPIRLNPKVGTVHHEVEMAVVIDKIARKISPEMALQFVGGYALAIDLTARDVQEEAKKQGLPWTVAKGQDSFCPISNMIAKADVPDPDNVGLWLKVNGEPRQRSNTKHMIHPTAFLVSYISHLFTLEPGDVILTGTPEGVGPINVGDTVTAGIEGLMQMKFDVEADT 223          
BLAST of EWM29896.1 vs. NCBI_GenBank
Match: gi|596217295|ref|XP_007223938.1| (acylpyruvase FAHD1, mitochondrial [Prunus persica] >gi|1139795509|gb|ONI28127.1| hypothetical protein PRUPE_1G125100 [Prunus persica])

HSP 1 Score: 255.373 bits (651), Expect = 4.750e-83
Identity = 122/217 (56.22%), Postives = 162/217 (74.65%), Query Frame = 0
Query:    4 LATSAIRASLINHGKKIIGVGKNYAMHIKEMGGQAPKAPVLFLKPTTSYVFEGSPIRLNPKVGTVHHEVEMAVVIDKIARKISPEMALQFVGGYALAIDLTARDVQEEAKKQGLPWTVAKGQDSFCPISNMIAKADVPDPDNVGLWLKVNGEPRQRSNTKHMIHPTAFLVSYISHLFTLEPGDVILTGTPEGVGPINVGDTVTAGIEGLMQMKFDVE 220
            +AT+A+   L+  G KI+GVG+NYA H KE+G   PK PVLFLKPT+SY+  G  I + P + ++ HEVE+AVVI K AR +S   A+ +V GYALA+D+TAR++Q  AK  GLPWT+AKGQD+F PIS+++ K  VPDPDN+ LWLKV+GE RQ+ +TK MI    FL+S+IS + TL  GDVILTGTP+GVGP+ VG  +TAGI  L+ ++F+VE
Sbjct:    1 MATAALE-KLLQVGTKIVGVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLENGGTIEVPPPLLSLDHEVELAVVISKKARDVSQATAMDYVAGYALALDMTAREIQASAKSAGLPWTIAKGQDTFTPISSLLPKEMVPDPDNIELWLKVDGELRQKGSTKDMIFKLPFLISHISSIMTLLEGDVILTGTPKGVGPVKVGQKITAGITNLLDVEFNVE 216          
BLAST of EWM29896.1 vs. NCBI_GenBank
Match: gi|567852721|ref|XP_006419524.1| (hypothetical protein CICLE_v10005665mg [Citrus clementina] >gi|568871748|ref|XP_006489042.1| PREDICTED: acylpyruvase FAHD1, mitochondrial [Citrus sinensis] >gi|557521397|gb|ESR32764.1| hypothetical protein CICLE_v10005665mg [Citrus clementina])

HSP 1 Score: 251.136 bits (640), Expect = 2.771e-81
Identity = 120/216 (55.56%), Postives = 161/216 (74.54%), Query Frame = 0
Query:    5 ATSAIRASLINHGKKIIGVGKNYAMHIKEMGGQAPKAPVLFLKPTTSYVFEGSPIRLNPKVGTVHHEVEMAVVIDKIARKISPEMALQFVGGYALAIDLTARDVQEEAKKQGLPWTVAKGQDSFCPISNMIAKADVPDPDNVGLWLKVNGEPRQRSNTKHMIHPTAFLVSYISHLFTLEPGDVILTGTPEGVGPINVGDTVTAGIEGLMQMKFDVE 220
            A+SA++  LI  G KI+ VG+NYA H KE+G   PK PVLFLKPT+SY+  G  I +   + ++HHEVE+AVVI + AR +    A+ +VGGYA+A+D+TAR++Q  AK  GLPWTVAKGQD+F PIS+++ K+ VPDP N+ LWLKV+GE RQ+ +TK MI    +L+S+IS + TL  GDVILTGTP+GVGP+ VG  +TAGI GL+ + FD+E
Sbjct:    4 ASSAVQ-KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVLPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGLLDVNFDIE 218          
BLAST of EWM29896.1 vs. NCBI_GenBank
Match: gi|16209656|gb|AAL14388.1| (AT4g15940/dl4011w [Arabidopsis thaliana] >gi|21593651|gb|AAM65618.1| isomerase like protein [Arabidopsis thaliana] >gi|58331823|gb|AAW70409.1| At4g15940 [Arabidopsis thaliana] >gi|1032285640|gb|OAO99967.1| hypothetical protein AXX17_AT4G18650 [Arabidopsis thaliana])

HSP 1 Score: 250.751 bits (639), Expect = 3.481e-81
Identity = 119/217 (54.84%), Postives = 161/217 (74.19%), Query Frame = 0
Query:    4 LATSAIRASLINHGKKIIGVGKNYAMHIKEMGGQAPKAPVLFLKPTTSYVFEGSPIRLNPKVGTVHHEVEMAVVIDKIARKISPEMALQFVGGYALAIDLTARDVQEEAKKQGLPWTVAKGQDSFCPISNMIAKADVPDPDNVGLWLKVNGEPRQRSNTKHMIHPTAFLVSYISHLFTLEPGDVILTGTPEGVGPINVGDTVTAGIEGLMQMKFDVE 220
            +ATS I+  +   G KI+ VG+NYA H KE+G   PK PV+FLKPT+SY+  G  I +   + ++HHEVE+A+VI + AR +   +A+ ++GGYA+A+D+TAR++Q  AK  GLPWTVAKGQD+F PIS+++ KA V DPDN+ LWLKV+GE RQ+  TK MI    +L+SYIS + TL  GDVILTGTPEGVGP+ +G  +TAGI GL +++FDVE
Sbjct:    1 MATSMIQ-RMFKQGTKIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIPHPLDSLHHEVELALVIGQKARDVPESIAMDYIGGYAVALDMTARELQASAKASGLPWTVAKGQDTFTPISSVLPKAMVRDPDNLELWLKVDGETRQKGLTKDMIFKVPYLISYISSIMTLYEGDVILTGTPEGVGPVKIGQKITAGITGLSEVQFDVE 216          
BLAST of EWM29896.1 vs. NCBI_GenBank
Match: gi|729455902|ref|XP_010524545.1| (PREDICTED: acylpyruvase FAHD1, mitochondrial [Tarenaya hassleriana])

HSP 1 Score: 249.98 bits (637), Expect = 7.988e-81
Identity = 121/216 (56.02%), Postives = 160/216 (74.07%), Query Frame = 0
Query:    4 LATSAIRASLINHGKKIIGVGKNYAMHIKEMGGQAPKAPVLFLKPTTSYVFEGSPIRLNPKVGTVHHEVEMAVVIDKIARKISPEMALQFVGGYALAIDLTARDVQEEAKKQGLPWTVAKGQDSFCPISNMIAKADVPDPDNVGLWLKVNGEPRQRSNTKHMIHPTAFLVSYISHLFTLEPGDVILTGTPEGVGPINVGDTVTAGIEGLMQMKFDV 219
            +ATS I+  L   G KI+GVG+NYA H KE+G   PK PVLFLKPT+SY+  G  I++   + ++HHEVE+AVVI + AR +   MA+ ++GGYA+A+D+TAR++Q  AK  GLPWT+AKGQD+F PIS+++  A VPDP+N+ LWLKV+ E +Q+ +TK MI    FL+SYIS + TL  GDVILTGTPEGVGP+ VG  VTAGI G  ++ FDV
Sbjct:    1 MATSMIQ-RLFTQGTKIVGVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLENGGTIKIPHPLESLHHEVELAVVIGEKARDVPEAMAMDYIGGYAVALDMTAREIQASAKASGLPWTLAKGQDTFTPISSVLPTAMVPDPNNLELWLKVDDEMKQKGSTKDMIFKIPFLISYISSVMTLFEGDVILTGTPEGVGPVKVGQKVTAGITGFSEVHFDV 215          
BLAST of EWM29896.1 vs. NCBI_GenBank
Match: gi|1191004271|ref|XP_020874334.1| (acylpyruvase FAHD1, mitochondrial [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 249.21 bits (635), Expect = 1.607e-80
Identity = 118/217 (54.38%), Postives = 161/217 (74.19%), Query Frame = 0
Query:    4 LATSAIRASLINHGKKIIGVGKNYAMHIKEMGGQAPKAPVLFLKPTTSYVFEGSPIRLNPKVGTVHHEVEMAVVIDKIARKISPEMALQFVGGYALAIDLTARDVQEEAKKQGLPWTVAKGQDSFCPISNMIAKADVPDPDNVGLWLKVNGEPRQRSNTKHMIHPTAFLVSYISHLFTLEPGDVILTGTPEGVGPINVGDTVTAGIEGLMQMKFDVE 220
            +ATS I+  +   G KI+ VG+NYA H KE+G   PK PV+FLKPT+SY+  G  I +   + ++HHEVE+A+VI + AR +   +A+ ++GGYA+A+D+TAR++Q  AK  GLPWT+AKGQD+F PIS+++ KA V DPDN+ LWLKV+GE RQ+  TK MI    +L+SYIS + TL  GDVILTGTPEGVGP+ +G  +TAGI GL +++FDVE
Sbjct:    1 MATSMIQ-RMFKQGTKIVCVGRNYAAHAKELGNSVPKEPVIFLKPTSSYLENGGTIEIPHPLDSLHHEVELALVIGQKARDVPESIAMDYIGGYAVALDMTARELQATAKASGLPWTLAKGQDTFTPISSVLPKAMVHDPDNLELWLKVDGETRQKGLTKDMIFKVPYLISYISSIMTLYEGDVILTGTPEGVGPVKIGQKITAGITGLSEVQFDVE 216          
BLAST of EWM29896.1 vs. NCBI_GenBank
Match: gi|727517059|ref|XP_010434905.1| (PREDICTED: acylpyruvase FAHD1, mitochondrial [Camelina sativa])

HSP 1 Score: 248.825 bits (634), Expect = 1.813e-80
Identity = 118/217 (54.38%), Postives = 161/217 (74.19%), Query Frame = 0
Query:    4 LATSAIRASLINHGKKIIGVGKNYAMHIKEMGGQAPKAPVLFLKPTTSYVFEGSPIRLNPKVGTVHHEVEMAVVIDKIARKISPEMALQFVGGYALAIDLTARDVQEEAKKQGLPWTVAKGQDSFCPISNMIAKADVPDPDNVGLWLKVNGEPRQRSNTKHMIHPTAFLVSYISHLFTLEPGDVILTGTPEGVGPINVGDTVTAGIEGLMQMKFDVE 220
            +ATS I+  +   G KI+ VG+NYA H KE+G   PK PV+FLKPT+SY+  G  I +   + ++HHEVE+A+VI + AR +   +A+ ++GGYA+A+D+TAR++Q  AK  GLPWT+AKGQD+F PIS+++ KA V DPDN+ LWLKV+GE RQ+  TK MI    +L+SYIS + TL  GDVILTGTPEGVGP+ +G  +TAGI GL +++FDVE
Sbjct:    1 MATSMIQ-RMFKQGTKIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIPHPLDSLHHEVELALVIGQKARDVPESIAMDYIGGYAVALDMTARELQASAKAAGLPWTLAKGQDTFTPISSVLPKAMVHDPDNLELWLKVDGETRQKGVTKDMIFKVPYLISYISSIMTLYEGDVILTGTPEGVGPVKIGQKITAGITGLSEVQFDVE 216          
BLAST of EWM29896.1 vs. NCBI_GenBank
Match: gi|1109269767|ref|XP_019159003.1| (PREDICTED: acylpyruvase FAHD1, mitochondrial-like [Ipomoea nil])

HSP 1 Score: 249.21 bits (635), Expect = 3.139e-80
Identity = 121/219 (55.25%), Postives = 162/219 (73.97%), Query Frame = 0
Query:    1 MASLATSAIRASLINHGKKIIGVGKNYAMHIKEMGGQAPKAPVLFLKPTTSYVFEGSPIRLNPKVGTVHHEVEMAVVIDKIARKISPEMALQFVGGYALAIDLTARDVQEEAKKQGLPWTVAKGQDSFCPISNMIAKADVPDPDNVGLWLKVNGEPRQRSNTKHMIHPTAFLVSYISHLFTLEPGDVILTGTPEGVGPINVGDTVTAGIEGLMQMKFDV 219
            MA+ A++  +  L+  G KIIGVG+N+A H KE+G   PK PVLFLKPTTSY+  G  I +   + T+HHEVE+AVVI + AR ++P  A+ ++GGYA+A+D+TAR++Q  AK  GLPWTVAKGQD+F PIS+++  + VPDP +V LWLKV+GE RQ+ +T+ MI    +LVS+IS + TL  GDVILTGTPEGVGP+ VG  V AGI GL+ + F+V
Sbjct:   24 MATAASACQK--LLTVGTKIIGVGRNFAAHAKELGNSIPKEPVLFLKPTTSYLQNGGTIEIPQSLETLHHEVELAVVIGQRARDVTPGSAMDYIGGYAVALDMTAREIQSAAKSAGLPWTVAKGQDTFTPISSILPCSMVPDPHDVELWLKVDGEIRQKGSTRDMIFKIPYLVSHISSIMTLAEGDVILTGTPEGVGPVKVGQKVEAGITGLLDVHFNV 240          
BLAST of EWM29896.1 vs. NCBI_GenBank
Match: gi|727555415|ref|XP_010449875.1| (PREDICTED: acylpyruvase FAHD1, mitochondrial-like [Camelina sativa])

HSP 1 Score: 248.054 bits (632), Expect = 4.026e-80
Identity = 118/217 (54.38%), Postives = 161/217 (74.19%), Query Frame = 0
Query:    4 LATSAIRASLINHGKKIIGVGKNYAMHIKEMGGQAPKAPVLFLKPTTSYVFEGSPIRLNPKVGTVHHEVEMAVVIDKIARKISPEMALQFVGGYALAIDLTARDVQEEAKKQGLPWTVAKGQDSFCPISNMIAKADVPDPDNVGLWLKVNGEPRQRSNTKHMIHPTAFLVSYISHLFTLEPGDVILTGTPEGVGPINVGDTVTAGIEGLMQMKFDVE 220
            +ATS I+  +   G KI+ VG+NYA H KE+G   PK PV+FLKPT+SY+  G  I +   + ++HHEVE+A+VI + AR +   +A+ ++GGYA+A+D+TAR++Q  AK  GLPWT+AKGQD+F PIS+++ KA V DPDN+ LWLKV+GE RQ+  TK MI    +L+SYIS + TL  GDVILTGTPEGVGP+ +G  +TAGI GL +++FDVE
Sbjct:    1 MATSMIQ-RMFKQGTKIVCVGRNYAAHAKELGNAVPKEPVIFLKPTSSYLENGGTIEIPHPLDSLHHEVELALVIGQKARDVPESIAMDYIGGYAVALDMTARELQASAKAAGLPWTLAKGQDTFTPISSVLPKAMVHDPDNLELWLKVDGEIRQKGVTKDMIFKVPYLISYISSIMTLYEGDVILTGTPEGVGPVKIGQKITAGITGLSEVQFDVE 216          
BLAST of EWM29896.1 vs. NCBI_GenBank
Match: gi|1040914330|ref|XP_017219393.1| (PREDICTED: acylpyruvase FAHD1, mitochondrial-like [Daucus carota subsp. sativus] >gi|1021028377|gb|KZM86162.1| hypothetical protein DCAR_023296 [Daucus carota subsp. sativus])

HSP 1 Score: 248.054 bits (632), Expect = 4.745e-80
Identity = 119/218 (54.59%), Postives = 161/218 (73.85%), Query Frame = 0
Query:    4 LATSAI-RASLINHGKKIIGVGKNYAMHIKEMGGQAPKAPVLFLKPTTSYVFEGSPIRLNPKVGTVHHEVEMAVVIDKIARKISPEMALQFVGGYALAIDLTARDVQEEAKKQGLPWTVAKGQDSFCPISNMIAKADVPDPDNVGLWLKVNGEPRQRSNTKHMIHPTAFLVSYISHLFTLEPGDVILTGTPEGVGPINVGDTVTAGIEGLMQMKFDVE 220
            +ATSA     L++ G KI+ VG+NYA H KE+G   PK PVLF+KPT+SY+  G  I +   + ++ HEVE+AVVI + AR +S   A+ ++GGYALA+D+TAR++Q  AK  GLPWTVAKGQD+F PIS+++++A VPDP N+ LWLKV+GE RQ+ +T  MI    FL+S+IS L TL  GDVILTGTP+GVGP+ VG  + AGI GL+ ++F+VE
Sbjct:    1 MATSATAHKKLLSVGTKIVAVGRNYAAHAKELGNAVPKEPVLFMKPTSSYLPNGGTIEVPHPLSSLDHEVELAVVIGRKARDVSESAAMNYIGGYALALDMTAREIQASAKSAGLPWTVAKGQDTFTPISSVLSQAMVPDPHNLELWLKVDGELRQKGSTADMIFKIPFLISHISSLMTLLEGDVILTGTPQGVGPVKVGQKIDAGITGLLDIQFNVE 218          
The following BLAST results are available for this feature:
BLAST of EWM29896.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553196503|ref|XP_005856360.1|9.860e-164100.00fumarylacetoacetate hydrolase domain-containing pr... [more]
gi|596217295|ref|XP_007223938.1|4.750e-8356.22acylpyruvase FAHD1, mitochondrial [Prunus persica]... [more]
gi|567852721|ref|XP_006419524.1|2.771e-8155.56hypothetical protein CICLE_v10005665mg [Citrus cle... [more]
gi|16209656|gb|AAL14388.1|3.481e-8154.84AT4g15940/dl4011w [Arabidopsis thaliana] >gi|21593... [more]
gi|729455902|ref|XP_010524545.1|7.988e-8156.02PREDICTED: acylpyruvase FAHD1, mitochondrial [Tare... [more]
gi|1191004271|ref|XP_020874334.1|1.607e-8054.38acylpyruvase FAHD1, mitochondrial [Arabidopsis lyr... [more]
gi|727517059|ref|XP_010434905.1|1.813e-8054.38PREDICTED: acylpyruvase FAHD1, mitochondrial [Came... [more]
gi|1109269767|ref|XP_019159003.1|3.139e-8055.25PREDICTED: acylpyruvase FAHD1, mitochondrial-like ... [more]
gi|727555415|ref|XP_010449875.1|4.026e-8054.38PREDICTED: acylpyruvase FAHD1, mitochondrial-like ... [more]
gi|1040914330|ref|XP_017219393.1|4.745e-8054.59PREDICTED: acylpyruvase FAHD1, mitochondrial-like ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna777rna777Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications