EWM22940.1, cds7733 (CDS) Nannochloropsis gaditana

Overview
NameEWM22940.1
Unique Namecds7733
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:274045..274076 -
Alignment locationCM002473.1:272769..273918 -
Alignment locationCM002473.1:272390..272608 -

Link to JBrowse

Properties
Property NameValue
Start range272390
Start range.
Protein idEWM22940.1
Productserine threonine protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100749g1.9921.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:274045..274076 -
CM002473.1supercontigCM002473.1:272769..273918 -
CM002473.1supercontigCM002473.1:272390..272608 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006470protein dephosphorylation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0004721phosphoprotein phosphatase activity
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR011236Ser/Thr_PPase_5
IPR029052Metallo-depent_PP-like
IPR004843Calcineurin-like_PHP_apaH
IPR006186Ser/Thr-sp_prot-phosphatase
Homology
BLAST of EWM22940.1 vs. NCBI_GenBank
Match: gi|585103666|gb|EWM22940.1| (serine threonine protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 956.436 bits (2471), Expect = 0.000e+0
Identity = 467/467 (100.00%), Postives = 467/467 (100.00%), Query Frame = 0
Query:    1 MGNTCTRLDTRSIHEAGPSSSDDPGRRPPRAEPSLTLAPGASADASEVVPPRSEPANAQLPSSPLPSIASSSLPLSTSPHLTEEQKEHWKIFNELDSQDEADVMALSSFFQILCRTASAANSQALFPPMEESRSQRLLGLARGHGTGGGKGRKGFGPGRGWGGLSDFKVQHVGRIDSNLHDLGDFQIPAKQRLNMDVALDVIDCFRRGGKLHRDSVHKILKSSYWLLKKFENVRAVTLPTLTEPPAQSPGRERRCSGTGMERTEEAQGGGAPANRKSWGQRGRLSSRISRTSLSRSWWGRGEGEEAAEEEEASTLVVCGDLHGQFFDLLYVLDVNGPPSSRTRYLFNGDFVDRGLQSVEVMLTLLALQVAAPEWVFLNRGNHEDLGVCCLFGFMRECLNKYDETTFAMFVEVFRYLPLATTINGQVLVLHGGLFSTPGVSMEDLQAAPRHEYGQGLGLGPKEGGEEG 467
            MGNTCTRLDTRSIHEAGPSSSDDPGRRPPRAEPSLTLAPGASADASEVVPPRSEPANAQLPSSPLPSIASSSLPLSTSPHLTEEQKEHWKIFNELDSQDEADVMALSSFFQILCRTASAANSQALFPPMEESRSQRLLGLARGHGTGGGKGRKGFGPGRGWGGLSDFKVQHVGRIDSNLHDLGDFQIPAKQRLNMDVALDVIDCFRRGGKLHRDSVHKILKSSYWLLKKFENVRAVTLPTLTEPPAQSPGRERRCSGTGMERTEEAQGGGAPANRKSWGQRGRLSSRISRTSLSRSWWGRGEGEEAAEEEEASTLVVCGDLHGQFFDLLYVLDVNGPPSSRTRYLFNGDFVDRGLQSVEVMLTLLALQVAAPEWVFLNRGNHEDLGVCCLFGFMRECLNKYDETTFAMFVEVFRYLPLATTINGQVLVLHGGLFSTPGVSMEDLQAAPRHEYGQGLGLGPKEGGEEG
Sbjct:    1 MGNTCTRLDTRSIHEAGPSSSDDPGRRPPRAEPSLTLAPGASADASEVVPPRSEPANAQLPSSPLPSIASSSLPLSTSPHLTEEQKEHWKIFNELDSQDEADVMALSSFFQILCRTASAANSQALFPPMEESRSQRLLGLARGHGTGGGKGRKGFGPGRGWGGLSDFKVQHVGRIDSNLHDLGDFQIPAKQRLNMDVALDVIDCFRRGGKLHRDSVHKILKSSYWLLKKFENVRAVTLPTLTEPPAQSPGRERRCSGTGMERTEEAQGGGAPANRKSWGQRGRLSSRISRTSLSRSWWGRGEGEEAAEEEEASTLVVCGDLHGQFFDLLYVLDVNGPPSSRTRYLFNGDFVDRGLQSVEVMLTLLALQVAAPEWVFLNRGNHEDLGVCCLFGFMRECLNKYDETTFAMFVEVFRYLPLATTINGQVLVLHGGLFSTPGVSMEDLQAAPRHEYGQGLGLGPKEGGEEG 467          
BLAST of EWM22940.1 vs. NCBI_GenBank
Match: gi|1189386926|gb|OSX74013.1| (hypothetical protein BU14_0314s0016 [Porphyra umbilicalis])

HSP 1 Score: 162.155 bits (409), Expect = 6.153e-40
Identity = 77/142 (54.23%), Postives = 98/142 (69.01%), Query Frame = 0
Query:  315 LVVCGDLHGQFFDLLYVLDVNGPPSSRTRYLFNGDFVDRGLQSVEVMLTLLALQVAAPEWVFLNRGNHEDLGVCCLFGFMRECLNKYDETTFAMFVEVFRYLPLATTING-------QVLVLHGGLFSTPGVSMEDLQAAPR 449
            + VCGD HGQF+DLL++ ++NG PS+   YLFNGDFVDRG  SVEV++TLLA +VA PE + L RGNHE L +  ++GF  E   KY ET F +F E FR +PLA  ++G       + LVLHGGLFS  GV++ DLQA  R
Sbjct:  365 VTVCGDTHGQFYDLLHIFELNGVPSAENPYLFNGDFVDRGSFSVEVIMTLLAYKVACPESMHLTRGNHETLSMNSVYGFQGEVKAKYSETLFKLFTETFRAMPLAYILDGTAVESGRRALVLHGGLFSKDGVTLADLQALNR 506          
BLAST of EWM22940.1 vs. NCBI_GenBank
Match: gi|929523086|ref|XP_014130731.1| (PREDICTED: serine/threonine-protein phosphatase 5, partial [Zonotrichia albicollis])

HSP 1 Score: 148.288 bits (373), Expect = 2.564e-39
Identity = 69/136 (50.74%), Postives = 93/136 (68.38%), Query Frame = 0
Query:  315 LVVCGDLHGQFFDLLYVLDVNGPPSSRTRYLFNGDFVDRGLQSVEVMLTLLALQVAAPEWVFLNRGNHEDLGVCCLFGFMRECLNKYDETTFAMFVEVFRYLPLATTINGQVLVLHGGLFSTPGVSMEDLQAAPRH 450
            + VCGD HGQF+DLL + ++NG PS    Y+FNGDFVDRG  SVEV+LTL   ++  P+   L RGNHE   +  ++GF  E   KY    FA+F EVF +LPLA  ING+VL++HGGLFS  GV+++D++   R+
Sbjct:    4 VTVCGDTHGQFYDLLNIFELNGLPSEANPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMFALFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERN 139          
BLAST of EWM22940.1 vs. NCBI_GenBank
Match: gi|1046771872|gb|OCK80272.1| (MgPPT1, serine threonine phosphatase 2A catalytic sub-unit like protein [Lepidopterella palustris CBS 459.81])

HSP 1 Score: 152.525 bits (384), Expect = 2.761e-39
Identity = 77/145 (53.10%), Postives = 91/145 (62.76%), Query Frame = 0
Query:  310 EEASTLVVCGDLHGQFFDLLYVLDVNGPPSSRTRYLFNGDFVDRGLQSVEVMLTLLALQVAAPEWVFLNRGNHEDLGVCCLFGFMRECLNKYDETTFAMFVEVFRYLPLATTINGQVLVLHGGLFSTPGVSMEDLQAAPRHEYGQ 454
            EE  T+ VCGD HGQFFDL+ +  +NG PS    YLFNGDFVDRG  S EV LTL A +   P   FLNRGNHE   +  ++GF  EC  KY E  F +F E F  LPLAT I  + LVLHGGLFS   VS+ D++   RH+  Q
Sbjct:    7 EEGHTMTVCGDTHGQFFDLMEIFRLNGAPSETNAYLFNGDFVDRGSWSTEVALTLYAYKWLYPNSFFLNRGNHETDDMNRMYGFEGECRAKYTERVFKLFSESFSALPLATLIGKKFLVLHGGLFSDDAVSLNDIRKLNRHKQRQ 151          
BLAST of EWM22940.1 vs. NCBI_GenBank
Match: gi|145492455|ref|XP_001432225.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124399335|emb|CAK64828.1| unnamed protein product [Paramecium tetraurelia])

HSP 1 Score: 154.836 bits (390), Expect = 3.219e-38
Identity = 72/135 (53.33%), Postives = 92/135 (68.15%), Query Frame = 0
Query:  315 LVVCGDLHGQFFDLLYVLDVNGPPSSRTRYLFNGDFVDRGLQSVEVMLTLLALQVAAPEWVFLNRGNHEDLGVCCLFGFMRECLNKYDETTFAMFVEVFRYLPLATTINGQVLVLHGGLFSTPGVSMEDLQAAPR 449
              VCGD HGQFFDL+ +  +NG PS    YLFNGDFVDRG  SVEVM+TL A +V  P+ + L RGNHE   +  L+GF  E  +KYD+  + +F  VF YLPLA T++ QV+V+HGGLFS  GV++ +LQ   R
Sbjct:  219 FTVCGDTHGQFFDLVNIFKINGNPSVNRPYLFNGDFVDRGSWSVEVMMTLFAWKVCNPDIMHLTRGNHESRNMNKLYGFEGEVKHKYDDKVYELFQTVFNYLPLAYTLSKQVMVVHGGLFSNDGVTISELQKLNR 353          
BLAST of EWM22940.1 vs. NCBI_GenBank
Match: gi|294872427|ref|XP_002766271.1| (serine/threonine protein phosphatase, putative [Perkinsus marinus ATCC 50983] >gi|239867017|gb|EEQ98988.1| serine/threonine protein phosphatase, putative, partial [Perkinsus marinus ATCC 50983])

HSP 1 Score: 149.058 bits (375), Expect = 5.134e-38
Identity = 72/137 (52.55%), Postives = 91/137 (66.42%), Query Frame = 0
Query:  315 LVVCGDLHGQFFDLLYVLDVNGPPSSRTRYLFNGDFVDRGLQSVEVMLTLLALQVAAPEWVFLNRGNHEDLGVCCLFGFMRECLNKYDETTFAMFVEVFRYLPLATTINGQVLVLHGGLFSTPGVSMEDLQAAPRHE 451
              VCGD+HGQF+DLL +  +NG PS    YLFNGDFVDRG  S+E +L LL+ ++A PE +FL RGNHE   +  L+GF  E   KYDET + +F E F  LPLA  IN  V V HGGLFS  GV++ D++A  R +
Sbjct:  130 FTVCGDIHGQFYDLLNIFKLNGTPSLENPYLFNGDFVDRGSFSLECILLLLSYKLAYPESLFLARGNHESRNMNQLYGFKGEVEAKYDETLYNLFCEAFCLLPLAHVINDTVFVTHGGLFSKDGVTLNDIRAIDRDQ 266          
BLAST of EWM22940.1 vs. NCBI_GenBank
Match: gi|294899499|ref|XP_002776643.1| (serine/threonine protein phosphatase, putative [Perkinsus marinus ATCC 50983] >gi|239883756|gb|EER08459.1| serine/threonine protein phosphatase, putative, partial [Perkinsus marinus ATCC 50983])

HSP 1 Score: 149.443 bits (376), Expect = 7.370e-38
Identity = 72/137 (52.55%), Postives = 91/137 (66.42%), Query Frame = 0
Query:  315 LVVCGDLHGQFFDLLYVLDVNGPPSSRTRYLFNGDFVDRGLQSVEVMLTLLALQVAAPEWVFLNRGNHEDLGVCCLFGFMRECLNKYDETTFAMFVEVFRYLPLATTINGQVLVLHGGLFSTPGVSMEDLQAAPRHE 451
              VCGD+HGQF+DLL +  +NG PS    YLFNGDFVDRG  S+E +L LL+ ++A PE +FL RGNHE   +  L+GF  E   KYDET + +F E F  LPLA  IN  V V HGGLFS  GV++ D++A  R +
Sbjct:  149 FTVCGDIHGQFYDLLNIFKLNGTPSLENPYLFNGDFVDRGSFSLECILLLLSYKLAYPESLFLARGNHESRNMNQLYGFKGEVEAKYDETLYNLFCEAFCLLPLAHVINDTVFVTHGGLFSKDGVTLNDIRAIDRDQ 285          
BLAST of EWM22940.1 vs. NCBI_GenBank
Match: gi|831281996|ref|XP_012672107.1| (PREDICTED: serine/threonine-protein phosphatase 5 [Clupea harengus])

HSP 1 Score: 153.68 bits (387), Expect = 8.585e-38
Identity = 70/141 (49.65%), Postives = 97/141 (68.79%), Query Frame = 0
Query:  310 EEASTLVVCGDLHGQFFDLLYVLDVNGPPSSRTRYLFNGDFVDRGLQSVEVMLTLLALQVAAPEWVFLNRGNHEDLGVCCLFGFMRECLNKYDETTFAMFVEVFRYLPLATTINGQVLVLHGGLFSTPGVSMEDLQAAPRH 450
            +E   + +CGD HGQ++DLL++ ++NG PS    YLFNGDFVDRG  SVEV++TL   ++  P+  FL RGNHE   +  ++GF  E   KY    F +F EVF++LPLA  ING+VLV+HGGLFS  GV+++DL+   R+
Sbjct:  214 KETEKMTICGDTHGQYYDLLHIFELNGLPSETNIYLFNGDFVDRGSFSVEVIVTLFGFKLLYPDHFFLLRGNHETDNMNQMYGFEGEVKAKYTAQMFQLFSEVFQWLPLAQCINGKVLVMHGGLFSEDGVTLDDLRKIERN 354          
BLAST of EWM22940.1 vs. NCBI_GenBank
Match: gi|1111927991|gb|OJJ87315.1| (hypothetical protein ASPGLDRAFT_1159878 [Aspergillus glaucus CBS 516.65])

HSP 1 Score: 148.288 bits (373), Expect = 9.564e-38
Identity = 75/145 (51.72%), Postives = 91/145 (62.76%), Query Frame = 0
Query:  310 EEASTLVVCGDLHGQFFDLLYVLDVNGPPSSRTRYLFNGDFVDRGLQSVEVMLTLLALQVAAPEWVFLNRGNHEDLGVCCLFGFMRECLNKYDETTFAMFVEVFRYLPLATTINGQVLVLHGGLFSTPGVSMEDLQAAPRHEYGQ 454
            EE + L VCGD HGQFFDLL +   NG PS +  YLFNGDFVDRG  S E+ L L A +   P  +FLNRGNHE   +   +GF  EC  KY+E  F +F E F  LPLAT I  + LVLHGGLFS   +S++D++   RH   Q
Sbjct:    7 EERNELTVCGDTHGQFFDLLEIFRRNGYPSDKHAYLFNGDFVDRGSWSTEIALVLYAYKWLRPNGIFLNRGNHETDDMNKAYGFEGECKAKYNERVFKVFSESFSALPLATLIGEKYLVLHGGLFSDDSISLDDIRKLNRHNQRQ 151          
BLAST of EWM22940.1 vs. NCBI_GenBank
Match: gi|1210028729|ref|XP_021409096.1| (serine/threonine-protein phosphatase 5-like [Lonchura striata domestica])

HSP 1 Score: 150.599 bits (379), Expect = 1.631e-37
Identity = 71/141 (50.35%), Postives = 95/141 (67.38%), Query Frame = 0
Query:  310 EEASTLVVCGDLHGQFFDLLYVLDVNGPPSSRTRYLFNGDFVDRGLQSVEVMLTLLALQVAAPEWVFLNRGNHEDLGVCCLFGFMRECLNKYDETTFAMFVEVFRYLPLATTINGQVLVLHGGLFSTPGVSMEDLQAAPRH 450
            +E   + VCGD HGQF+DLL + ++NG PS    Y+FNGDFVDRG  SVEV+LTL   ++  PE   L RGNHE   +  ++GF  E   KY    FA+F EVF +LPLA  ING+VL++HGGLFS  GV+++D++   R+
Sbjct:  157 KETEKVTVCGDTHGQFYDLLNIFELNGLPSEANPYIFNGDFVDRGSFSVEVILTLFGFKLLYPEHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMFALFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERN 297          
The following BLAST results are available for this feature:
BLAST of EWM22940.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103666|gb|EWM22940.1|0.000e+0100.00serine threonine protein, partial [Nannochloropsis... [more]
gi|1189386926|gb|OSX74013.1|6.153e-4054.23hypothetical protein BU14_0314s0016 [Porphyra umbi... [more]
gi|929523086|ref|XP_014130731.1|2.564e-3950.74PREDICTED: serine/threonine-protein phosphatase 5,... [more]
gi|1046771872|gb|OCK80272.1|2.761e-3953.10MgPPT1, serine threonine phosphatase 2A catalytic ... [more]
gi|145492455|ref|XP_001432225.1|3.219e-3853.33hypothetical protein [Paramecium tetraurelia strai... [more]
gi|294872427|ref|XP_002766271.1|5.134e-3852.55serine/threonine protein phosphatase, putative [Pe... [more]
gi|294899499|ref|XP_002776643.1|7.370e-3852.55serine/threonine protein phosphatase, putative [Pe... [more]
gi|831281996|ref|XP_012672107.1|8.585e-3849.65PREDICTED: serine/threonine-protein phosphatase 5 ... [more]
gi|1111927991|gb|OJJ87315.1|9.564e-3851.72hypothetical protein ASPGLDRAFT_1159878 [Aspergill... [more]
gi|1210028729|ref|XP_021409096.1|1.631e-3750.35serine/threonine-protein phosphatase 5-like [Lonch... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7754rna7754Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications