EWM22979.1, cds7695 (CDS) Nannochloropsis gaditana

Overview
NameEWM22979.1
Unique Namecds7695
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:158885..159298 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22979.1
ProductTAFII28-like protein
Orig transcript idgnl|cribi|Naga_101525g1.9899.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:158885..159298 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046982protein heterodimerization activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR006809TAFII28
Homology
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BLAST of EWM22979.1 vs. NCBI_GenBank
Match: gi|585103718|gb|EWM22979.1| (TAFII28-like protein [Nannochloropsis gaditana])

HSP 1 Score: 256.144 bits (653), Expect = 5.364e-86
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 
Query:    1 MQRGRSGSLDLFAENSHLSPGRGGGGGSPLSHGGRSDGGGSRGGGGGGVEGGGMGALEDESTRQKVLHAERMRIALANMSEGQRERFEFFRRSHFHRETMKRLMLESFARVRALEGGGEGGPRRGRGEGRGRRWAWR 137
            MQRGRSGSLDLFAENSHLSPGRGGGGGSPLSHGGRSDGGGSRGGGGGGVEGGGMGALEDESTRQKVLHAERMRIALANMSEGQRERFEFFRRSHFHRETMKRLMLESFARVRALEGGGEGGPRRGRGEGRGRRWAWR
Sbjct:    1 MQRGRSGSLDLFAENSHLSPGRGGGGGSPLSHGGRSDGGGSRGGGGGGVEGGGMGALEDESTRQKVLHAERMRIALANMSEGQRERFEFFRRSHFHRETMKRLMLESFARVRALEGGGEGGPRRGRGEGRGRRWAWR 137
The following BLAST results are available for this feature:
BLAST of EWM22979.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585103718|gb|EWM22979.1|5.364e-86100.00TAFII28-like protein [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7716rna7716Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications