EWM22987.1, cds7685 (CDS) Nannochloropsis gaditana

Overview
NameEWM22987.1
Unique Namecds7685
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:135158..135667 -
Alignment locationCM002473.1:135002..135026 -
Alignment locationCM002473.1:134841..134888 -
Alignment locationCM002473.1:134430..134566 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22987.1
Productphenylalanyl-trna synthetase alpha chain
Orig transcript idgnl|cribi|Naga_101129g1.1201.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:135158..135667 -
CM002473.1supercontigCM002473.1:135002..135026 -
CM002473.1supercontigCM002473.1:134841..134888 -
CM002473.1supercontigCM002473.1:134430..134566 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of EWM22987.1 vs. NCBI_GenBank
Match: gi|585103736|gb|EWM22987.1| (phenylalanyl-trna synthetase alpha chain [Nannochloropsis gaditana])

HSP 1 Score: 476.093 bits (1224), Expect = 8.712e-170
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query:    1 MDESTFLQLFQQEGGEDGIPDSFLFAAAHAADHQALIGLLNSLAADGLLELTSRASTFLELTEEGKKVLADGSPEAKVFAAISPTGEGTTQEALLKALGKDCVKIGMGPLMKAKAVRKEGDKLVRAVPEFQDGTQAVLRQVTGQEGKEGQAQGLSEEVVKTLRKRQLVTQVTRKSFSVHPWRPRPGRLFPSLVESPCSVPPDPAGHGLHGDADEQVGRVFLLELRRPLPAPVPPGAGRS 239
            MDESTFLQLFQQEGGEDGIPDSFLFAAAHAADHQALIGLLNSLAADGLLELTSRASTFLELTEEGKKVLADGSPEAKVFAAISPTGEGTTQEALLKALGKDCVKIGMGPLMKAKAVRKEGDKLVRAVPEFQDGTQAVLRQVTGQEGKEGQAQGLSEEVVKTLRKRQLVTQVTRKSFSVHPWRPRPGRLFPSLVESPCSVPPDPAGHGLHGDADEQVGRVFLLELRRPLPAPVPPGAGRS
Sbjct:    1 MDESTFLQLFQQEGGEDGIPDSFLFAAAHAADHQALIGLLNSLAADGLLELTSRASTFLELTEEGKKVLADGSPEAKVFAAISPTGEGTTQEALLKALGKDCVKIGMGPLMKAKAVRKEGDKLVRAVPEFQDGTQAVLRQVTGQEGKEGQAQGLSEEVVKTLRKRQLVTQVTRKSFSVHPWRPRPGRLFPSLVESPCSVPPDPAGHGLHGDADEQVGRVFLLELRRPLPAPVPPGAGRS 239          
BLAST of EWM22987.1 vs. NCBI_GenBank
Match: gi|553185528|ref|XP_005854261.1| (phenylalanyl-trna synthetase alpha chain [Nannochloropsis gaditana CCMP526] >gi|422294796|gb|EKU22096.1| phenylalanyl-trna synthetase alpha chain [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 333.954 bits (855), Expect = 2.229e-114
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0
Query:    1 MDESTFLQLFQQEGGEDGIPDSFLFAAAHAADHQALIGLLNSLAADGLLELTSRASTFLELTEEGKKVLADGSPEAKVFAAISPTGEGTTQEALLKALGKDCVKIGMGPLMKAKAVRKEGDKLVRAVPEFQDGTQAVLRQVTGQEGKEGQAQGLSEEVVKTLRKRQLVTQV 171
            MDESTFLQLFQQEG EDGIPDSFLFAAAHAADHQALIGLLNSLAADGLLELTSRASTFLELTEEGKKVLADGSPEAKVFAAISPTGEGTTQEALLKALGKDCVKIGMGPLMKAKAVRKEGDKLVRAVPEFQDGTQAVLRQ+TGQEGKEGQAQGLSEEVVKTLRKRQLVTQV
Sbjct:    5 MDESTFLQLFQQEGSEDGIPDSFLFAAAHAADHQALIGLLNSLAADGLLELTSRASTFLELTEEGKKVLADGSPEAKVFAAISPTGEGTTQEALLKALGKDCVKIGMGPLMKAKAVRKEGDKLVRAVPEFQDGTQAVLRQLTGQEGKEGQAQGLSEEVVKTLRKRQLVTQV 175          
BLAST of EWM22987.1 vs. NCBI_GenBank
Match: gi|224001682|ref|XP_002290513.1| (phenylalanyl-trna synthetase [Thalassiosira pseudonana CCMP1335] >gi|220973935|gb|EED92265.1| phenylalanyl-trna synthetase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 102.064 bits (253), Expect = 2.194e-21
Identity = 60/162 (37.04%), Postives = 91/162 (56.17%), Query Frame = 0
Query:   19 IPDSFLFAAAHAADHQALIGLLNSLAADGLLELTSRASTFLELTEEGKKVLADGSPEAKVFAAISPTGE-GTTQEALLKALGKDCVKIGMGPLMKAKAVRKEGD-KLVRAVPEFQDGTQAVLRQVTGQEGKEGQAQGLSEEVVKTLRKRQLVTQVTRKSFSV 178
            IPD+ +FA AH+  H  ++G   SL+ D  + L+  +S F  LT E + +LA+GS E  V AA+   GE G +   L   +GKD  KIGMG  +K K  RKE D +LV  V   +D  +     +   +   G A  L ++ +  L++R+L+T VTRKS+++
Sbjct:   19 IPDTLVFAEAHSLSHNTIVGTSKSLSTDAYISLSELSSQFYTLTTEAESILANGSQECIVIAALIAAGEDGLSMTDLQNGVGKDVCKIGMGNCLKNKWARKEKDGRLVAQVEGVEDEVKV---LLGKLKEGGGGADVLDDKAIAILKRRKLITLVTRKSYTI 177          
BLAST of EWM22987.1 vs. NCBI_GenBank
Match: gi|301123667|ref|XP_002909560.1| (phenylalanyl-tRNA synthetase alpha chain [Phytophthora infestans T30-4] >gi|262100322|gb|EEY58374.1| phenylalanyl-tRNA synthetase alpha chain [Phytophthora infestans T30-4])

HSP 1 Score: 97.8265 bits (242), Expect = 7.514e-20
Identity = 57/172 (33.14%), Postives = 95/172 (55.23%), Query Frame = 0
Query:    9 LFQQEGGEDGIPDSFLFAAAHAADHQALIGLLNSLAADGLLELTSRASTFLELTEEGKKVLADGSPEAKVFAAISPTGEGTTQEALLKALGKDCVKIGMGPLMKAKAVR--KEGDKLVRAVPEFQDGTQAVLRQVTGQEGKEGQAQGLSEEVVKTLRKRQLVTQVTRKSFSV 178
            L Q  G E  + D++ F+ ++   H+ ++G++ SL  D  +  T R+++F  L +E    LA GSPE +VF AIS   EG  ++ L  A+G   +K+G G  MK K +R  K   K  R V + +D    +LR+V   +  +G    +S++   TL++R+L    TRKS+++
Sbjct:   14 LLQTIGSEGSVADTYDFSLSNGLSHELVVGVMKSLLVDAFVADTERSTSFYVLKDEANSFLAQGSPEIQVFHAIS--AEGVDRKTLEAAVGAATLKVGQGACMKNKWIRLDKADGKFYRNVDDVKDEVTEMLRRV---QQADGALSAVSKDEANTLKRRKLAEVRTRKSYTL 180          
BLAST of EWM22987.1 vs. NCBI_GenBank
Match: gi|970650028|gb|KUF89153.1| (Phenylalanine--tRNA ligase alpha subunit [Phytophthora nicotianae])

HSP 1 Score: 97.8265 bits (242), Expect = 8.444e-20
Identity = 59/172 (34.30%), Postives = 94/172 (54.65%), Query Frame = 0
Query:    9 LFQQEGGEDGIPDSFLFAAAHAADHQALIGLLNSLAADGLLELTSRASTFLELTEEGKKVLADGSPEAKVFAAISPTGEGTTQEALLKALGKDCVKIGMGPLMKAKAVR--KEGDKLVRAVPEFQDGTQAVLRQVTGQEGKEGQAQGLSEEVVKTLRKRQLVTQVTRKSFSV 178
            L Q  G E  + D++ FA A+   H+ ++G++ SL  D  +  T R+++F  L +E +  L  GSPE +VF AI    EG  ++ L  A+G   +K+G G  MK K +R  K   K  R V E +D    +LR+V   E  +G    +S++   TL++R+L    TRKS+++
Sbjct:   14 LLQTIGSEGSVADTYEFALANGLSHELVVGVMKSLLVDAFVADTERSTSFYVLKDEARSFLEQGSPEIQVFRAIP--AEGVDRKTLEAAVGAATLKVGQGACMKNKWIRLDKADGKFYRNVEEVKDEVTEMLRRV---EQADGALSTVSKDEANTLKRRKLAEVRTRKSYAL 180          
BLAST of EWM22987.1 vs. NCBI_GenBank
Match: gi|675188721|ref|XP_008903245.1| (phenylalanine-tRNA ligase, alpha subunit [Phytophthora parasitica INRA-310] >gi|566027877|gb|ETI50788.1| phenylalanine-tRNA ligase, alpha subunit [Phytophthora parasitica P1569] >gi|567965206|gb|ETK90679.1| phenylalanine-tRNA ligase, alpha subunit [Phytophthora parasitica] >gi|567993920|gb|ETL44086.1| phenylalanine-tRNA ligase, alpha subunit [Phytophthora parasitica] >gi|568023196|gb|ETL97258.1| phenylalanine-tRNA ligase, alpha subunit [Phytophthora parasitica] >gi|568053585|gb|ETM50409.1| phenylalanine-tRNA ligase, alpha subunit [Phytophthora parasitica] >gi|568096699|gb|ETN11446.1| phenylalanine-tRNA ligase, alpha subunit [Phytophthora parasitica INRA-310] >gi|570331580|gb|ETO79528.1| phenylalanine-tRNA ligase, alpha subunit [Phytophthora parasitica P1976] >gi|570955393|gb|ETP20558.1| phenylalanine-tRNA ligase, alpha subunit [Phytophthora parasitica CJ01A1] >gi|570990562|gb|ETP48486.1| phenylalanine-tRNA ligase, alpha subunit [Phytophthora parasitica P10297] >gi|970654922|gb|KUF93163.1| hypothetical protein AM588_10004000 [Phytophthora nicotianae])

HSP 1 Score: 97.8265 bits (242), Expect = 8.779e-20
Identity = 59/172 (34.30%), Postives = 94/172 (54.65%), Query Frame = 0
Query:    9 LFQQEGGEDGIPDSFLFAAAHAADHQALIGLLNSLAADGLLELTSRASTFLELTEEGKKVLADGSPEAKVFAAISPTGEGTTQEALLKALGKDCVKIGMGPLMKAKAVR--KEGDKLVRAVPEFQDGTQAVLRQVTGQEGKEGQAQGLSEEVVKTLRKRQLVTQVTRKSFSV 178
            L Q  G E  + D++ FA A+   H+ ++G++ SL  D  +  T R+++F  L +E +  L  GSPE +VF AI    EG  ++ L  A+G   +K+G G  MK K +R  K   K  R V E +D    +LR+V   E  +G    +S++   TL++R+L    TRKS+++
Sbjct:   14 LLQTIGSEGSVADTYEFALANGLSHELVVGVMKSLLVDAFVADTERSTSFYVLKDEARSFLEQGSPEIQVFRAIP--AEGVDRKTLEAAVGAATLKVGQGACMKNKWIRLDKADGKFYRNVEEVKDEVTEMLRRV---EQADGALSTVSKDEANTLKRRKLAEVRTRKSYAL 180          
BLAST of EWM22987.1 vs. NCBI_GenBank
Match: gi|397567346|gb|EJK45534.1| (hypothetical protein THAOC_35851, partial [Thalassiosira oceanica])

HSP 1 Score: 93.5893 bits (231), Expect = 1.090e-19
Identity = 60/170 (35.29%), Postives = 94/170 (55.29%), Query Frame = 0
Query:   14 GGEDGIPDSFLFAAAHAADHQALIGLLNSLAADGLLELTSRASTFLELTEEGKKVLADGSPEAKVFAAISPTG-EGTTQEALLKALGKDCVKIGMGPLMKAKAVRKE---GDKLVRAVPEFQDGTQAVLRQVTGQEGKEG-QAQGLSEEVVKTLRKRQLVTQVTRKSFSV 178
            G +  I DSF FA ++  DH A++G   SL  D  + L+  ++ F  L +E + ++ +GS E +V  A+   G EG T   L + +GKD  KIGMG  MK K  +K+   G  +  A  + QDG +  L  +  Q   EG  A  L ++ +K L++R+LV+ +TRKS+ +
Sbjct:   14 GADASIADSFAFAGSNGLDHNAVVGASKSLQGDAYVSLSELSTQFYVLGKEAEDIVKNGSQEIRVLGALIEAGDEGLTIPELQEKVGKDVSKIGMGNCMKLKWAKKDKASGKLIAAAGSDTQDGVKEQLSAL--QNAPEGDNANVLDDKTLKDLKRRKLVSLITRKSYKI 181          
BLAST of EWM22987.1 vs. NCBI_GenBank
Match: gi|299472119|emb|CBN77104.1| (Phenylalanine--tRNA ligase [Ectocarpus siliculosus])

HSP 1 Score: 97.0561 bits (240), Expect = 1.334e-19
Identity = 62/165 (37.58%), Postives = 93/165 (56.36%), Query Frame = 0
Query:   19 IPDSFLFAAAHAADHQALIGLLNSLAADGLLELTSRASTFLELTEEGKKVLADGSPEAKVFAAISPTGEGTTQEALLKALGKDCVKIGMGPLMKAKAVRK-EGDKLVRAVP----EFQDGTQAVLRQVTGQEGKEGQAQGLSEEVVKTLRKRQLVTQVTRKSFSV 178
            I D++ FA A    H   +G+L SL A+ +L+     +T+  ++ EG++V+ +GSPE +V   +    +G ++  L  ALG D VKIG+G  MK K V K EG  LVR         +D  + +L++V G E        L ++  K L++R+LVTQVTRKSF V
Sbjct:   25 IADTWGFAEAMGCPHTETVGVLISLEAEEMLKSKKLETTYFVVSAEGQRVIEEGSPEMRVLECVPVGSDGISKAGLEAALGADVVKIGLGQCMKNKWVAKGEGGVLVRGANGGDGAVEDAAKELLKKVEGGE-------TLGDQQAKDLKRRKLVTQVTRKSFKV 182          
BLAST of EWM22987.1 vs. NCBI_GenBank
Match: gi|1032155049|gb|OAO18244.1| (phenylalanyl-tRNA synthetase alpha chain [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 95.9005 bits (237), Expect = 3.776e-19
Identity = 65/178 (36.52%), Postives = 96/178 (53.93%), Query Frame = 0
Query:    3 ESTFLQLFQQEGGEDGIPDSFLFAAAHAADHQALIGLLNSLAADGLLELTSRASTFLELTEEGKKVLADGSPEAKVFAAISPTGEGTTQEALLKALGKDCVKIGMGPLMKAKAVRKEGDK--LVRAVPEFQDGTQAVLRQVTGQEGKEGQAQGLSEEVVKTLRKRQLVTQVTRKSFSV 178
            E   LQ   ++G    I +S+ FAA+   DHQA++G++ SL  D L++    +  F ELTEE   V+ +GSPE +V  +I    EG   +AL+ A+GKD  KIG    MK K V+K+     +V  V E  D  Q  L+++    G   +    S E  K L +RQ+VT +TRK + +
Sbjct:    6 EKVLLQTVNEKGE---IENSYAFAASLNVDHQAVVGVIKSLETDLLIKTEQLSEQFWELTEEALAVIENGSPELRVMKSIP--AEGIANDALMAAVGKDLYKIGFSYCMKNKWVKKDKATGMIVPLVAEPVDELQMQLKELKETGGSVAKIAAGSAE-GKQLVRRQMVTLITRKFYKI 177          
BLAST of EWM22987.1 vs. NCBI_GenBank
Match: gi|953501335|emb|CEG37336.1| (phenylalanine-trna alpha subunit [Plasmopara halstedii])

HSP 1 Score: 95.1301 bits (235), Expect = 6.296e-19
Identity = 59/178 (33.15%), Postives = 96/178 (53.93%), Query Frame = 0
Query:    3 ESTFLQLFQQEGGEDGIPDSFLFAAAHAADHQALIGLLNSLAADGLLELTSRASTFLELTEEGKKVLADGSPEAKVFAAISPTGEGTTQEALLKALGKDCVKIGMGPLMKAKAVR--KEGDKLVRAVPEFQDGTQAVLRQVTGQEGKEGQAQGLSEEVVKTLRKRQLVTQVTRKSFSV 178
            E+  LQ    EG    + D++ F+ A+   H+ ++G++ SL  D  +  T R+++F  L +E K  L  GSPE +VF AI P  EG  ++ L  A+G   +K+G G  MK K +R  K   K  R   +  D    +LR+V   E  +G    +S++   TL++R+L+   TRKS+++
Sbjct:   11 EALLLQTISNEGS---VADTYDFSLANNLSHELVVGVMKSLLVDAFVADTERSTSFYVLKDEAKIFLDHGSPEIQVFRAI-PV-EGVDRKTLEAAIGAATLKVGQGACMKNKWIRLDKADGKFYRNTEQADDNVTEMLRRV---EQADGAISAISQDEANTLKRRKLIETRTRKSYTL 180          
The following BLAST results are available for this feature:
BLAST of EWM22987.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103736|gb|EWM22987.1|8.712e-170100.00phenylalanyl-trna synthetase alpha chain [Nannochl... [more]
gi|553185528|ref|XP_005854261.1|2.229e-11498.83phenylalanyl-trna synthetase alpha chain [Nannochl... [more]
gi|224001682|ref|XP_002290513.1|2.194e-2137.04phenylalanyl-trna synthetase [Thalassiosira pseudo... [more]
gi|301123667|ref|XP_002909560.1|7.514e-2033.14phenylalanyl-tRNA synthetase alpha chain [Phytopht... [more]
gi|970650028|gb|KUF89153.1|8.444e-2034.30Phenylalanine--tRNA ligase alpha subunit [Phytopht... [more]
gi|675188721|ref|XP_008903245.1|8.779e-2034.30phenylalanine-tRNA ligase, alpha subunit [Phytopht... [more]
gi|397567346|gb|EJK45534.1|1.090e-1935.29hypothetical protein THAOC_35851, partial [Thalass... [more]
gi|299472119|emb|CBN77104.1|1.334e-1937.58Phenylalanine--tRNA ligase [Ectocarpus siliculosus... [more]
gi|1032155049|gb|OAO18244.1|3.776e-1936.52phenylalanyl-tRNA synthetase alpha chain [Blastocy... [more]
gi|953501335|emb|CEG37336.1|6.296e-1933.15phenylalanine-trna alpha subunit [Plasmopara halst... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7706rna7706Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications