EWM23016.1, cds7656 (CDS) Nannochloropsis gaditana

Overview
NameEWM23016.1
Unique Namecds7656
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:36450..36649 -
Alignment locationCM002473.1:35957..36169 -
Alignment locationCM002473.1:35689..35818 -
Alignment locationCM002473.1:35234..35354 -
Alignment locationCM002473.1:34692..35107 -
Alignment locationCM002473.1:34241..34511 -
Alignment locationCM002473.1:33693..34114 -

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Properties
Property NameValue
Protein idEWM23016.1
ProductZinc finger, C2H2
Orig transcript idgnl|cribi|Naga_100493g2.5747.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:36450..36649 -
CM002473.1supercontigCM002473.1:35957..36169 -
CM002473.1supercontigCM002473.1:35689..35818 -
CM002473.1supercontigCM002473.1:35234..35354 -
CM002473.1supercontigCM002473.1:34692..35107 -
CM002473.1supercontigCM002473.1:34241..34511 -
CM002473.1supercontigCM002473.1:33693..34114 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR007087Znf_C2H2
Homology
[Close]
BLAST of EWM23016.1 vs. NCBI_GenBank
Match: gi|585103806|gb|EWM23016.1| (Zinc finger, C2H2 [Nannochloropsis gaditana])

HSP 1 Score: 1175.23 bits (3039), Expect = 0.000e+0
Identity = 590/590 (100.00%), Postives = 590/590 (100.00%), Query Frame = 0 
Query:    1 MSVVVDMCSIFDIEFAPSRSGGMVKTDGAPTSSSPPEVSVSKTASSSPISTPAFSHALCIELESFLRLSVDATYLSKYVAAAQMMFYLPPDSSSPPPSLPSSLPPSLTSSPLQLLPCGTREEARAYVIDRREPLFRRWISLYSKQLNMVSLFLSFLGLSFSARAIASQGGRTTYCIYLKEERLDGLPGALYSCEVTAPSSSTPSLPSSIPSSESKELYPEADGPSTTSSPLGTGVAKEEGREEGRGGAPEDLLQQHLHHYNPQPALSPPPLPQHIHEHQQLQQPPAYMQQQPPQPPQPQSMGHYRPHPQPLSAQGYHSSFPPSCPPHGLNYASPENASYLPPSHPSTVPPPPPPFYYPPQVDAASNYAHGSTTASIPPPPLPHPYSHHGGQHQQPSNLAPQQPSIMPSFPPHMNASMSQGGGGSMGKGGGGGKKRKSTRAPPGGPYFDEEGKTKKRNPVACEACGQVFSNKGNLIRHTQQSCRVLVKTRSSSSSSNSSTGTGHGSTNEGLNMGRREDAGIPASYQPSLGPAMGLSNLSYLSSLHHPSLHSQPQYHPSSQPQQMPQHPGRGDPAHAHHSMPPSMYMTLMNN 590
            MSVVVDMCSIFDIEFAPSRSGGMVKTDGAPTSSSPPEVSVSKTASSSPISTPAFSHALCIELESFLRLSVDATYLSKYVAAAQMMFYLPPDSSSPPPSLPSSLPPSLTSSPLQLLPCGTREEARAYVIDRREPLFRRWISLYSKQLNMVSLFLSFLGLSFSARAIASQGGRTTYCIYLKEERLDGLPGALYSCEVTAPSSSTPSLPSSIPSSESKELYPEADGPSTTSSPLGTGVAKEEGREEGRGGAPEDLLQQHLHHYNPQPALSPPPLPQHIHEHQQLQQPPAYMQQQPPQPPQPQSMGHYRPHPQPLSAQGYHSSFPPSCPPHGLNYASPENASYLPPSHPSTVPPPPPPFYYPPQVDAASNYAHGSTTASIPPPPLPHPYSHHGGQHQQPSNLAPQQPSIMPSFPPHMNASMSQGGGGSMGKGGGGGKKRKSTRAPPGGPYFDEEGKTKKRNPVACEACGQVFSNKGNLIRHTQQSCRVLVKTRSSSSSSNSSTGTGHGSTNEGLNMGRREDAGIPASYQPSLGPAMGLSNLSYLSSLHHPSLHSQPQYHPSSQPQQMPQHPGRGDPAHAHHSMPPSMYMTLMNN
Sbjct:    1 MSVVVDMCSIFDIEFAPSRSGGMVKTDGAPTSSSPPEVSVSKTASSSPISTPAFSHALCIELESFLRLSVDATYLSKYVAAAQMMFYLPPDSSSPPPSLPSSLPPSLTSSPLQLLPCGTREEARAYVIDRREPLFRRWISLYSKQLNMVSLFLSFLGLSFSARAIASQGGRTTYCIYLKEERLDGLPGALYSCEVTAPSSSTPSLPSSIPSSESKELYPEADGPSTTSSPLGTGVAKEEGREEGRGGAPEDLLQQHLHHYNPQPALSPPPLPQHIHEHQQLQQPPAYMQQQPPQPPQPQSMGHYRPHPQPLSAQGYHSSFPPSCPPHGLNYASPENASYLPPSHPSTVPPPPPPFYYPPQVDAASNYAHGSTTASIPPPPLPHPYSHHGGQHQQPSNLAPQQPSIMPSFPPHMNASMSQGGGGSMGKGGGGGKKRKSTRAPPGGPYFDEEGKTKKRNPVACEACGQVFSNKGNLIRHTQQSCRVLVKTRSSSSSSNSSTGTGHGSTNEGLNMGRREDAGIPASYQPSLGPAMGLSNLSYLSSLHHPSLHSQPQYHPSSQPQQMPQHPGRGDPAHAHHSMPPSMYMTLMNN 590
[Close]
BLAST of EWM23016.1 vs. NCBI_GenBank
Match: gi|553176108|ref|XP_005852353.1| (hypothetical protein NGA_0691300, partial [Nannochloropsis gaditana CCMP526] >gi|422296175|gb|EKU23474.1| hypothetical protein NGA_0691300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 388.267 bits (996), Expect = 4.515e-130
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 
Query:  148 MVSLFLSFLGLSFSARAIASQGGRTTYCIYLKEERLDGLPGALYSCEVTAPSSSTPSLPSSIPSSESKELYPEADGPSTTSSPLGTGVAKEEGREEGRGGAPEDLLQQHLHHYNPQPALSPPPLPQHIHEHQQLQQPPAYMQQQPPQPPQPQSMGHYRPHPQPLSAQGYHSSFPPSCPPHGLNYASPENASYLPPS 343
            MVSLFLSFLGLSFSARAIASQGGRTTYCIYLKEERLDGLPGALYSCEVTAPSSSTPSLPSSIPSSESKELYPEADGPSTTSSPLGTGVAKEEGREEGRGGAPEDLLQQHLHHYNPQPALSPPPLPQHIHEHQQLQQPPAYMQQQPPQPPQPQSMGHYRPHPQPLSAQGYHSSFPPSCPPHGLNYASPENASYLPPS
Sbjct:    1 MVSLFLSFLGLSFSARAIASQGGRTTYCIYLKEERLDGLPGALYSCEVTAPSSSTPSLPSSIPSSESKELYPEADGPSTTSSPLGTGVAKEEGREEGRGGAPEDLLQQHLHHYNPQPALSPPPLPQHIHEHQQLQQPPAYMQQQPPQPPQPQSMGHYRPHPQPLSAQGYHSSFPPSCPPHGLNYASPENASYLPPS 196
The following BLAST results are available for this feature:
BLAST of EWM23016.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103806|gb|EWM23016.1|0.000e+0100.00Zinc finger, C2H2 [Nannochloropsis gaditana][more]
gi|553176108|ref|XP_005852353.1|4.515e-130100.00hypothetical protein NGA_0691300, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7676rna7676Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications