EWM23022.1, cds7650 (CDS) Nannochloropsis gaditana

Overview
NameEWM23022.1
Unique Namecds7650
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:8482..9498 +

Link to JBrowse

Properties
Property NameValue
Start range8482
Start range.
Protein idEWM23022.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100436g2.9343.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:8482..9498 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Homology
[Close]
BLAST of EWM23022.1 vs. NCBI_GenBank
Match: gi|585103819|gb|EWM23022.1| (hypothetical protein Naga_100436g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 657.136 bits (1694), Expect = 0.000e+0
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0 
Query:    1 PSLLARLRRCLGRGLFSLTAAFRQCFSNLLTPPFFFLVVTTFTFYGAFQPLETFAVSYLKAHQGFTSTHASLCASILPSLSVLLSPPYGCPGRQGAGPFLLRPPSLLASDLPVAPRLHAPLVHAPDRPRTRLPPPRPLPGPKLDPGLLPRLARLRLFLRLDLDGHPILRPRPVPRSRSRDDPRHRRRRHPGRPGGSGAALGPGAGGGGGAGIGGRSRADGDPGGLGVREERLAHVDWPGGGGGSGHAACHVGLEEETFGGRFGVRLGGRGEGEKEGGQDERENVGRCPLWVWKVACGEGGKCQEREDGWEDYGVFTLKSNPVTTAVGSRNGGALKCGA 338
            PSLLARLRRCLGRGLFSLTAAFRQCFSNLLTPPFFFLVVTTFTFYGAFQPLETFAVSYLKAHQGFTSTHASLCASILPSLSVLLSPPYGCPGRQGAGPFLLRPPSLLASDLPVAPRLHAPLVHAPDRPRTRLPPPRPLPGPKLDPGLLPRLARLRLFLRLDLDGHPILRPRPVPRSRSRDDPRHRRRRHPGRPGGSGAALGPGAGGGGGAGIGGRSRADGDPGGLGVREERLAHVDWPGGGGGSGHAACHVGLEEETFGGRFGVRLGGRGEGEKEGGQDERENVGRCPLWVWKVACGEGGKCQEREDGWEDYGVFTLKSNPVTTAVGSRNGGALKCGA
Sbjct:    1 PSLLARLRRCLGRGLFSLTAAFRQCFSNLLTPPFFFLVVTTFTFYGAFQPLETFAVSYLKAHQGFTSTHASLCASILPSLSVLLSPPYGCPGRQGAGPFLLRPPSLLASDLPVAPRLHAPLVHAPDRPRTRLPPPRPLPGPKLDPGLLPRLARLRLFLRLDLDGHPILRPRPVPRSRSRDDPRHRRRRHPGRPGGSGAALGPGAGGGGGAGIGGRSRADGDPGGLGVREERLAHVDWPGGGGGSGHAACHVGLEEETFGGRFGVRLGGRGEGEKEGGQDERENVGRCPLWVWKVACGEGGKCQEREDGWEDYGVFTLKSNPVTTAVGSRNGGALKCGA 338
The following BLAST results are available for this feature:
BLAST of EWM23022.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585103819|gb|EWM23022.1|0.000e+0100.00hypothetical protein Naga_100436g2, partial [Nanno... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7670rna7670Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications