EWM23026.1, cds7646 (CDS) Nannochloropsis gaditana

Overview
NameEWM23026.1
Unique Namecds7646
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:5244..5321 -
Alignment locationCM002473.1:4737..4799 -
Alignment locationCM002473.1:4309..4587 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23026.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100604g2.112.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:5244..5321 -
CM002473.1supercontigCM002473.1:4737..4799 -
CM002473.1supercontigCM002473.1:4309..4587 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM23026.1 vs. NCBI_GenBank
Match: gi|585103824|gb|EWM23025.1| (hypothetical protein Naga_100604g2 [Nannochloropsis gaditana] >gi|585103825|gb|EWM23026.1| hypothetical protein Naga_100604g2 [Nannochloropsis gaditana])

HSP 1 Score: 283.108 bits (723), Expect = 1.241e-96
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 
Query:    1 MQFHRELLSGTQERGGPRGEKGVNPKEVSLTALPRTWWGCWGDGMEKRRTLPRPYRRRRSRPQPRPNMALAKQPMAARMHSPPLDSVEDSLVMSFARGTMLDSDKQWHGALLLSRCLSGSSIVAARNRPEERIFLGVER 139
            MQFHRELLSGTQERGGPRGEKGVNPKEVSLTALPRTWWGCWGDGMEKRRTLPRPYRRRRSRPQPRPNMALAKQPMAARMHSPPLDSVEDSLVMSFARGTMLDSDKQWHGALLLSRCLSGSSIVAARNRPEERIFLGVER
Sbjct:    1 MQFHRELLSGTQERGGPRGEKGVNPKEVSLTALPRTWWGCWGDGMEKRRTLPRPYRRRRSRPQPRPNMALAKQPMAARMHSPPLDSVEDSLVMSFARGTMLDSDKQWHGALLLSRCLSGSSIVAARNRPEERIFLGVER 139
[Close]
BLAST of EWM23026.1 vs. NCBI_GenBank
Match: gi|585103826|gb|EWM23027.1| (hypothetical protein Naga_100604g2 [Nannochloropsis gaditana] >gi|585103827|gb|EWM23028.1| hypothetical protein Naga_100604g2 [Nannochloropsis gaditana])

HSP 1 Score: 235.343 bits (599), Expect = 3.544e-77
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0 
Query:   25 PKEVSLTALPRTWWGCWGDGMEKRRTLPRPYRRRRSRPQPRPNMALAKQPMAARMHSPPLDSVEDSLVMSFARGTMLDSDKQWHGALLLSRCLSGSSIVAARNRPEERIFLGVER 139
            P+EVSLTALPRTWWGCWGDGMEKRRTLPRPYRRRRSRPQPRPNMALAKQPMAARMHSPPLDSVEDSLVMSFARGTMLDSDKQWHGALLLSRCLSGSSIVAARNRPEERIFLGVER
Sbjct:   59 PQEVSLTALPRTWWGCWGDGMEKRRTLPRPYRRRRSRPQPRPNMALAKQPMAARMHSPPLDSVEDSLVMSFARGTMLDSDKQWHGALLLSRCLSGSSIVAARNRPEERIFLGVER 173
[Close]
BLAST of EWM23026.1 vs. NCBI_GenBank
Match: gi|553181287|ref|XP_005853538.1| (hypothetical protein NGA_0450800 [Nannochloropsis gaditana CCMP526] >gi|422295522|gb|EKU22821.1| hypothetical protein NGA_0450800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 55.0694 bits (131), Expect = 1.394e-7
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 0 
Query:    1 MQFHRELLSGTQERGGPRGEKGVNPKEVSLTAL 33
            MQFHRELLSGTQERGGP+GEK VNPK +  T L
Sbjct:    1 MQFHRELLSGTQERGGPKGEKIVNPKLLLATGL 33
The following BLAST results are available for this feature:
BLAST of EWM23026.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585103824|gb|EWM23025.1|1.241e-96100.00hypothetical protein Naga_100604g2 [Nannochloropsi... [more]
gi|585103826|gb|EWM23027.1|3.544e-7799.13hypothetical protein Naga_100604g2 [Nannochloropsi... [more]
gi|553181287|ref|XP_005853538.1|1.394e-778.79hypothetical protein NGA_0450800 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7666rna7666Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications