EWM23043.1, cds7631 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23043.1 vs. NCBI_GenBank
Match: gi|585103850|gb|EWM23043.1| (dna cross-link repair 1a protein [Nannochloropsis gaditana]) HSP 1 Score: 811.987 bits (2096), Expect = 0.000e+0 Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0
Query: 1 MASQVERIKWIEGTSFLVDGFNFLSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTKSTILHTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIGWSYLRNRKTARDACPSSPSSYTPWVNPQNGAKLYWVPYSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHFLADMDLSHDRSRLDRYLGRGEEKRLKILPPNKRRLEGGVGGKRKTFDFEKIDVEEQVLRWEELSKGLNSDGKAQERGRGWDEREFTSDTKEKGLGRKTVEVIVLDDDDN 392
MASQVERIKWIEGTSFLVDGFNFLSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTKSTILHTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIGWSYLRNRKTARDACPSSPSSYTPWVNPQNGAKLYWVPYSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHFLADMDLSHDRSRLDRYLGRGEEKRLKILPPNKRRLEGGVGGKRKTFDFEKIDVEEQVLRWEELSKGLNSDGKAQERGRGWDEREFTSDTKEKGLGRKTVEVIVLDDDDN
Sbjct: 1 MASQVERIKWIEGTSFLVDGFNFLSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTKSTILHTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIGWSYLRNRKTARDACPSSPSSYTPWVNPQNGAKLYWVPYSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHFLADMDLSHDRSRLDRYLGRGEEKRLKILPPNKRRLEGGVGGKRKTFDFEKIDVEEQVLRWEELSKGLNSDGKAQERGRGWDEREFTSDTKEKGLGRKTVEVIVLDDDDN 392
BLAST of EWM23043.1 vs. NCBI_GenBank
Match: gi|553194330|ref|XP_005855931.1| (hydrolase involved in interstrand cross-link repair [Nannochloropsis gaditana CCMP526] >gi|422293132|gb|EKU20432.1| hydrolase involved in interstrand cross-link repair [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 386.726 bits (992), Expect = 4.543e-132 Identity = 187/188 (99.47%), Postives = 187/188 (99.47%), Query Frame = 0
Query: 205 GWSYLRNRKTARDACPSSPSSYTPWVNPQNGAKLYWVPYSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHFLADMDLSHDRSRLDRYLGRGEEKRLKILPPNKRRLEGGVGGKRKTFDFEKIDVEEQVLRWEELSKGLNSDGKAQERGRGWDEREFTSDTKEKGLGRKTVEVIVLDDDDN 392
GWSYLRNRKTARDACPSSPSSYTPWVNPQNGAKLYWVPYSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHFLADMDLSHDRSRLDRYLGRGEEKRLKILPPNKRRLEGGVGGKRKTFDFEKIDVEEQVLRWEELSKGLNSDGK QERGRGWDEREFTSDTKEKGLGRKTVEVIVLDDDDN
Sbjct: 36 GWSYLRNRKTARDACPSSPSSYTPWVNPQNGAKLYWVPYSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHFLADMDLSHDRSRLDRYLGRGEEKRLKILPPNKRRLEGGVGGKRKTFDFEKIDVEEQVLRWEELSKGLNSDGKVQERGRGWDEREFTSDTKEKGLGRKTVEVIVLDDDDN 223
BLAST of EWM23043.1 vs. NCBI_GenBank
Match: gi|1208526585|gb|OWM80540.1| (hypothetical protein CDL15_Pgr019820 [Punica granatum]) HSP 1 Score: 214.927 bits (546), Expect = 1.465e-61 Identity = 123/290 (42.41%), Postives = 173/290 (59.66%), Query Frame = 0
Query: 9 KWIEGTSFLVDGFNFLSPK-CSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTKSTILHTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIG--WSYLRNRKTARDACPS-SPSSYT---------PWVNP--QNGAKLYWVPYSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHF 283
K I GT F VD F + S + CSAYFLTHFH+DHY GL + HG IYC+ +T L ++G +++ TL + I+G++VTLL+ANHCPGA ++ F + LHTGDFRAS+++ ++ RV +LYLDTTYCN KY FPS+ VL + RI +++ +P T+ VG YSIGKER +++ +G +YL+ K A + P+ +T + P ++ +Y VPYSEHSS+TELR FVR +RP KIIPTV G+ E+ +F
Sbjct: 183 KRIPGTPFTVDAFRYGSIEGCSAYFLTHFHADHYGGLSKGWSHGPIYCTPLTARLPWPEIGCFCRWIRTLEFNEERVIEGIKVTLLEANHCPGAALIHFRLSNGQ-CYLHTGDFRASKSM----QAYPLLVKQRVNVLYLDTTYCNPKYKFPSREDVLNYVVRITKKQLMTQPRTLVVVGAYSIGKERVYLSISQALGSLSNYLKTYKDQYVALLAFRPTGWTFSEAVGNQLDLIRPTSKSNITIYGVPYSEHSSFTELREFVRFLRPEKIIPTVNVGNPSNREKMQSYF 467
BLAST of EWM23043.1 vs. NCBI_GenBank
Match: gi|552835210|ref|XP_005848921.1| (hypothetical protein CHLNCDRAFT_144365 [Chlorella variabilis] >gi|307108579|gb|EFN56819.1| hypothetical protein CHLNCDRAFT_144365 [Chlorella variabilis]) HSP 1 Score: 213.772 bits (543), Expect = 9.394e-61 Identity = 139/344 (40.41%), Postives = 177/344 (51.45%), Query Frame = 0
Query: 1 MASQVERIKWIEGTSFLVDGFNFLSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTKSTILHTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERP--STVFYVGTYSIGKERAVRAVAAGIGW----SYLRNRKTARDACPSSPSSYTPWVNPQN-------GAKLYWVPYSEHSSYTELRSFVRAIRP-------------------------RKIIPTVGAGDEKGVERQLKHFLADMDLSHDRSRLDRYLGRGEEK 306
MASQVE IKW+ GT FLVDGF F P C A+FLTH HSDH GL SF G IYCS +T LL +G++P + LPL+ PTTI GVEV +DANHCPGAVM LF + +TILHTGD R + + A R D +L LDTTY K+TFP Q V+ + + RE A P + +F VG+Y IGKERA A +GW S + R P++ + V + G +L+ ++ + T + V AIRP R++IPTV A D + F MDLS DRSRLD YL R ++
Sbjct: 1 MASQVEAIKWVPGTPFLVDGFRFQHPACRAFFLTHMHSDHTTGLSRSFSAGPIYCSPITARLLRCDMGIRPDLIRILPLDLPTTICGVEVVPIDANHCPGAVMFLF---RAPTTILHTGDVRWQAGMAQHAALTGRQVD----VLMLDTTYSQRKWTFPPQEEVVELMVQAMAREAAAGPPGAVLFVVGSYHIGKERAYLGAGAALGWRVHCSPAKRRLLHMLGLPAAWLALLTDVAEEAQIHVLGMGEQLHPQALADRIAGTRWQRAV-AIRPTGWSWRPKGGLDVRTEGECVRALRPRRLIPTVDAADAAASRAVVDRFADLMDLSADRSRLDCYLRRQPQQ 336
BLAST of EWM23043.1 vs. NCBI_GenBank
Match: gi|1205962288|ref|XP_021318004.1| (DNA cross-link repair protein SNM1 isoform X2 [Sorghum bicolor]) HSP 1 Score: 209.92 bits (533), Expect = 9.122e-60 Identity = 129/311 (41.48%), Postives = 168/311 (54.02%), Query Frame = 0
Query: 9 KWIEGTSFLVDGFNFLSPK-CSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTKSTILHTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGI-----------------GWSYLRNRKTARDACPSSPSSYTPW--VNPQNGAKLY----------------WVPYSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHF 283
K I GT F VD F + + CSAYFL+HFH DHY GL +CHG IYCS +T L+ L V +++ L L+ I+GV VTLL+ANHCPGA ++ F K T LHTGDFRAS+++ + R RV ++YLDTTYCN KY FP Q V+ + R A+R ++P T+ VG YSIGKE A++ + GWS L R + + SSP P VN +N K VPYSEHSS+TELR FV +RP+K+IPTV G+ ++ HF
Sbjct: 160 KKIPGTPFTVDAFRYGQVEGCSAYFLSHFHHDHYGGLTKKWCHGPIYCSALTARLVKMCLSVNSDYIYPLELDTNYVIEGVTVTLLEANHCPGAALIHFQLSDGK-TYLHTGDFRASKSMQLHP---LLQRG-RVNLVYLDTTYCNPKYKFPPQEDVIDFVVRTAQRYLKKQPKTLIVVGAYSIGKENVYLAISQALEVPIYTDASRRRILHSFGWSDLSKRICSCNQ--SSPLHVLPLGSVNHENLKKYLETLSGRFLAVLAFRPTGVPYSEHSSFTELRDFVMFLRPQKVIPTVNVGNATSRDKMQAHF 463
BLAST of EWM23043.1 vs. NCBI_GenBank
Match: gi|971535296|ref|XP_015163383.1| (PREDICTED: DNA cross-link repair protein SNM1 isoform X2 [Solanum tuberosum]) HSP 1 Score: 206.838 bits (525), Expect = 1.173e-59 Identity = 120/292 (41.10%), Postives = 164/292 (56.16%), Query Frame = 0
Query: 9 KWIEGTSFLVDGFNFLSPK-CSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTKSTILHTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIGWSYLRNRKTARDACPSSPSSYTP--W------------VNP--QNGAKLYWVPYSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHF 283
K I GT F VD F + S K CSAYFL+HFH+DHY GL + HG IYC+++T LL L V P F+ L L ++ G+++T+LDANHCPGA ++ F + LHTGDFRAS+ + S+ R+ ILYLDTTYCN KY FPS+ VL + + R P T+ VG YSIGKE A++ +G L+ ++D +S S+ P W + P + +Y VPYSEHS++ EL+ FV+ +RP KIIPTV G+ + +F
Sbjct: 78 KRIAGTPFTVDAFCYGSVKGCSAYFLSHFHADHYIGLTKGWSHGPIYCTNLTARLLRICLYVSPSFICPLELGTEYSLNGIKITMLDANHCPGAALIHFRLPNGQC-YLHTGDFRASKLM----QSYPVLASQRINILYLDTTYCNPKYRFPSKEDVLEFVVGVTRRYLNNHPKTIVVVGAYSIGKEHVYSAISKALG--ILQRYLASQDGQYTSMLSFRPTGWTYSETIGENLNLIKPTSKGNITIYGVPYSEHSNFIELQEFVQFLRPEKIIPTVNVGNAVNRGKMQSYF 362
BLAST of EWM23043.1 vs. NCBI_GenBank
Match: gi|545356950|ref|XP_005644152.1| (DRMBL-domain-containing protein, partial [Coccomyxa subellipsoidea C-169] >gi|384246117|gb|EIE19608.1| DRMBL-domain-containing protein, partial [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 203.756 bits (517), Expect = 4.856e-59 Identity = 117/319 (36.68%), Postives = 160/319 (50.16%), Query Frame = 0
Query: 11 IEGTSFLVDGFNFLSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKK------TKSTILHTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIGWSYLRNRK-----------------TARDACPS-----------SPSSYT------PWVNP-------------------QNGAKLYWVPYSEHSSYTELRSFVRAIRPRKIIPTVGA 270
+ T F+VDGF F S +C Y+L+H+HSDH GL SF GTIYCS VT LLV + + P + LPL P + G+ VTL+DANHCPGAV+ LF ++ ILHTGD R + A ++ R+ +L+LDTTY + K+ FP Q +A + R+ ++E RP T+F +G+Y IGKERA A +GW N RDA + +P + T PW + + +Y VPYSEHSS+ ELR V+ +RPR+I+PTV A
Sbjct: 1 VPNTRFMVDGFRFQSSRCKHYWLSHYHSDHTTGLTTSFSSGTIYCSAVTANLLVKDMHINPSCIQPLPLNIPLLVDGINVTLIDANHCPGAVLFLFKTPPPPGSEFSEQVILHTGDMRWHPRMGRHPAL----KNQRIDMLFLDTTYASPKHVFPCQEDAIADIVRVMKQEAKARPGTLFIMGSYRIGKERAYLGAAKALGWKVHVNADKLRVLRLLGLPENDMALLTRDAAAARIHVSFMGKLLTPDALTDRIRAGPWTHVVAFRPTGWSFQKSGLSCRREGDVAIYGVPYSEHSSFAELRDCVKTLRPRRIVPTVNA 315
BLAST of EWM23043.1 vs. NCBI_GenBank
Match: gi|1035907485|gb|OAY37082.1| (hypothetical protein MANES_11G073600 [Manihot esculenta]) HSP 1 Score: 202.601 bits (514), Expect = 3.241e-57 Identity = 123/290 (42.41%), Postives = 162/290 (55.86%), Query Frame = 0
Query: 9 KWIEGTSFLVDGFNFLSPK-CSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTKSTILHTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIGW--SYLR---NRKTARDACPSSPSSYTPWVNPQ---------NGAKLYWVPYSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHF 283
K I GT F VD F + S + CSAYFLTHFH DHY GL + HG IYC+ +T LL L V +VH L L I GV VTLL+A HCPGA ++ F T LHTGDFRAS+ + S+ +V +LYLDTTYCN KY FPS+ VL + R+ + +P T+ VG YSIGKE A++ +G YL+ N+ A A + +Y+ V Q +Y VPYSEHSS++EL+ FV+ ++P KIIPTV G+ ++ +F
Sbjct: 145 KRIPGTPFAVDAFRYGSIQGCSAYFLTHFHFDHYGGLTKGWSHGLIYCTRLTARLLTLCLSVNSSYVHPLDLNTEYVIGGVSVTLLEALHCPGAALIHFR-LPTGLCYLHTGDFRASKCM----QSYALLLKQKVNVLYLDTTYCNPKYNFPSKEDVLDYVVRVTKDFLKRQPKTLVVVGAYSIGKECVYLAISKALGTLKDYLKNFVNQYAAVLAFRPTGWTYSESVGKQLDQIRPISKGNVTIYGVPYSEHSSFSELKEFVKFLKPDKIIPTVNVGNPATRDKMQSYF 429
BLAST of EWM23043.1 vs. NCBI_GenBank
Match: gi|355562792|gb|EHH19386.1| (hypothetical protein EGK_20079 [Macaca mulatta] >gi|355783112|gb|EHH65033.1| hypothetical protein EGM_18373 [Macaca fascicularis]) HSP 1 Score: 211.075 bits (536), Expect = 6.366e-57 Identity = 131/334 (39.22%), Postives = 170/334 (50.90%), Query Frame = 0
Query: 9 KWIEGTSFLVDGFNF-LSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTKSTILHTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIG---------WSYLR-------NRKTARDACPS--------------------------------SPSSYTPW--------VNPQNGAKL--YWVPYSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHF 283
K I GT F VD F + + C+AYFLTHFHSDHY GL F +YCS++TG LL KL V+ Q++HTLPL+ + GV+V LLDANHCPGAVM+LF+ + ILHTGDFRA ++ + D +V +LYLDTTYC+ +YTFPSQ V+ A P T+ GTYSIGKE+ A+A +G + LR N D C S P+ +T V PQ + Y +PYSEHSSY E++ FV+ ++P+KIIPTV G K K+F
Sbjct: 704 KKIPGTGFTVDAFQYGMVEGCTAYFLTHFHSDHYAGLSKHFTF-PVYCSEITGNLLKNKLHVQEQYIHTLPLDIECVVNGVKVVLLDANHCPGAVMILFY-LPNGTVILHTGDFRADPSMEHSLLA-----DQKVHMLYLDTTYCSPEYTFPSQQEVIQFAINTAFEALTLNPHTLVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLRCLNIPEINSLITTDMCSSLVHLLPMMQINFKGLQNHLKKYGGKYNQILAFRPTGWTHSNKFPRIADVIPQTKGNISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTVNVGTWKSRNTMEKYF 1030
BLAST of EWM23043.1 vs. NCBI_GenBank
Match: gi|109090605|ref|XP_001090942.1| (PREDICTED: DNA cross-link repair 1A protein [Macaca mulatta] >gi|966964783|ref|XP_015003704.1| PREDICTED: DNA cross-link repair 1A protein [Macaca mulatta] >gi|966964785|ref|XP_015003706.1| PREDICTED: DNA cross-link repair 1A protein [Macaca mulatta]) HSP 1 Score: 210.69 bits (535), Expect = 7.815e-57 Identity = 131/334 (39.22%), Postives = 171/334 (51.20%), Query Frame = 0
Query: 9 KWIEGTSFLVDGFNF-LSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTKSTILHTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIG---------WSYLR-------NRKTARDACPS--------------------------------SPSSYT-----PWVN---PQNGAKL--YWVPYSEHSSYTELRSFVRAIRPRKIIPTVGAGDEKGVERQLKHF 283
K I GT F VD F + + C+AYFLTHFHSDHY GL F +YCS++TG LL KL V+ Q++HTLPL+ + GV+V LLDANHCPGAVM+LF+ + ILHTGDFRA ++ + D +V +LYLDTTYC+ +YTFPSQ V+ A P T+ GTYSIGKE+ A+A +G + LR N D C S P+ +T P + PQ + Y +PYSEHSSY E++ FV+ ++P+KIIPTV G K K+F
Sbjct: 704 KKIPGTGFTVDAFQYGMVEGCTAYFLTHFHSDHYAGLSKHFTF-PVYCSEITGNLLKNKLHVQEQYIHTLPLDIECVVNGVKVVLLDANHCPGAVMILFY-LPNGTVILHTGDFRADPSMEHSLLA-----DQKVHMLYLDTTYCSPEYTFPSQQEVIQFAINTAFEALTLNPHTLVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLRCLNIPEINSLITTDMCSSLVHLLPMMQINFKGLQNHLKKYGGKYNQILAFRPTGWTHSNKFPRIADVIPQTKGNISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPTVNVGTWKSRNTMEKYF 1030 The following BLAST results are available for this feature:
BLAST of EWM23043.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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