EWM23056.1, cds7617 (CDS) Nannochloropsis gaditana

Overview
NameEWM23056.1
Unique Namecds7617
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:437768..438238 -
Alignment locationCM002472.1:437375..437515 -
Alignment locationCM002472.1:437021..437187 -

Link to JBrowse

Properties
Property NameValue
Start range437021
Start range.
Protein idEWM23056.1
Productprotein transport protein sec13
Partialtrue
Orig transcript idgnl|cribi|Naga_101320g1.4563.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:437768..438238 -
CM002472.1supercontigCM002472.1:437375..437515 -
CM002472.1supercontigCM002472.1:437021..437187 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
GO:0007165signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
BLAST of EWM23056.1 vs. NCBI_GenBank
Match: gi|585103868|gb|EWM23056.1| (protein transport protein sec13, partial [Nannochloropsis gaditana])

HSP 1 Score: 507.294 bits (1305), Expect = 0.000e+0
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
Query:    1 MNPYGQHQQQQMFYGQPPQQQQQQQPYGAGGYAHPQQQQYPPQAPSQAYGGYMQQPQQPTGYPPQQAYPPQAQPQQFSPAQIPAQPSYQPQPVPQVQEPQYSQIPPAAGSSALPTQVTAGPGGDMSMETQHEDMIHDAQLDYYGKKLATCSSDRTIKIFEVTGGQTPSSSPPYTIQAHSGPVWQVAWAHPRWGCLVASASYDGTVLIHRENKEQGVWDTGVVHQGLENQSVNSIAFVRLPPSLSPFLPPSLPPSFLPSL 259
            MNPYGQHQQQQMFYGQPPQQQQQQQPYGAGGYAHPQQQQYPPQAPSQAYGGYMQQPQQPTGYPPQQAYPPQAQPQQFSPAQIPAQPSYQPQPVPQVQEPQYSQIPPAAGSSALPTQVTAGPGGDMSMETQHEDMIHDAQLDYYGKKLATCSSDRTIKIFEVTGGQTPSSSPPYTIQAHSGPVWQVAWAHPRWGCLVASASYDGTVLIHRENKEQGVWDTGVVHQGLENQSVNSIAFVRLPPSLSPFLPPSLPPSFLPSL
Sbjct:    1 MNPYGQHQQQQMFYGQPPQQQQQQQPYGAGGYAHPQQQQYPPQAPSQAYGGYMQQPQQPTGYPPQQAYPPQAQPQQFSPAQIPAQPSYQPQPVPQVQEPQYSQIPPAAGSSALPTQVTAGPGGDMSMETQHEDMIHDAQLDYYGKKLATCSSDRTIKIFEVTGGQTPSSSPPYTIQAHSGPVWQVAWAHPRWGCLVASASYDGTVLIHRENKEQGVWDTGVVHQGLENQSVNSIAFVRLPPSLSPFLPPSLPPSFLPSL 259          
BLAST of EWM23056.1 vs. NCBI_GenBank
Match: gi|1023190906|gb|KZS88497.1| (WD40 repeat-like protein [Sistotremastrum niveocremeum HHB9708] >gi|1023237500|gb|KZT33486.1| WD40 repeat-like protein [Sistotremastrum suecicum HHB10207 ss-3])

HSP 1 Score: 143.28 bits (360), Expect = 2.595e-37
Identity = 71/128 (55.47%), Postives = 92/128 (71.88%), Query Frame = 0
Query:  113 LPTQVT-AGPGGDMSMETQHEDMIHDAQLDYYGKKLATCSSDRTIKIFEVTGGQTPSSSPPYTIQAHSGPVWQVAWAHPRWGCLVASASYDGTVLIHRENKEQ---GVWDTGVVHQGLENQSVNSIAF 236
            + TQ T    GG + +ET H+DMIHDAQLDYYGK+LATCSSDRTIK+F+V  GQ   SSP  T++ HSGPVWQVAWAHP++G ++AS SYDG VLI +E+++    G W   +    L   SVNS+++
Sbjct:    1 MSTQATDIASGGSLPIETAHDDMIHDAQLDYYGKRLATCSSDRTIKVFDVVDGQQQKSSPGQTLKGHSGPVWQVAWAHPKYGHILASCSYDGKVLIWKEDQQSQQGGTW-LKMKEHSLHTASVNSVSW 127          
BLAST of EWM23056.1 vs. NCBI_GenBank
Match: gi|1035383160|gb|OAX39702.1| (WD40 repeat-like protein [Rhizopogon vinicolor AM-OR11-026])

HSP 1 Score: 139.428 bits (350), Expect = 7.881e-36
Identity = 72/133 (54.14%), Postives = 90/133 (67.67%), Query Frame = 0
Query:  127 METQHEDMIHDAQLDYYGKKLATCSSDRTIKIFEVTGGQTPSSSPPYTIQAHSGPVWQVAWAHPRWGCLVASASYDGTVLIHRENKEQGVWDTGVVHQGLENQSVNSIAFVRLPPSLSPFLPPSLPPSFLPSL 259
            +ET HEDMIHDAQLDYYGK+LATCSSDRT+K+F+V  G+T S S  +T++ H+GPVWQVAWAHP++G ++AS SYDG VLI RE    G W T V    L   SVNS+++   P  L   L  +     L  L
Sbjct:   12 IETAHEDMIHDAQLDYYGKRLATCSSDRTVKVFDVIDGET-SKSSGHTLKGHTGPVWQVAWAHPKFGHILASCSYDGKVLIWREQAAGG-W-TKVKEHTLHTASVNSVSWA--PHELGAILACASSDGKLSVL 139          
BLAST of EWM23056.1 vs. NCBI_GenBank
Match: gi|648153039|gb|KDR66878.1| (hypothetical protein GALMADRAFT_258759 [Galerina marginata CBS 339.88])

HSP 1 Score: 139.428 bits (350), Expect = 1.022e-35
Identity = 67/114 (58.77%), Postives = 88/114 (77.19%), Query Frame = 0
Query:  127 METQHEDMIHDAQLDYYGKKLATCSSDRTIKIFEVTGGQTPSSSPPYTIQAHSGPVWQVAWAHPRWGCLVASASYDGTVLIHRENKEQGVWDTG----VVHQGLENQSVNSIAF 236
            +ET HEDMIHDAQLDYYGK+LATCSSDRT+K+F+V  G+T  SSP +T++ H+GPVWQVAWAHP++G ++AS+SYDG VLI +E + QG   TG    +    L   SVNS+++
Sbjct:   12 IETAHEDMIHDAQLDYYGKRLATCSSDRTVKVFDVVDGET-RSSPGHTLKGHTGPVWQVAWAHPKYGHILASSSYDGKVLIWKEQQSQGN-STGGWIKIKEHTLHTASVNSVSW 123          
BLAST of EWM23056.1 vs. NCBI_GenBank
Match: gi|1021837597|gb|KZP25899.1| (WD40 repeat-like protein [Fibularhizoctonia sp. CBS 109695])

HSP 1 Score: 135.576 bits (340), Expect = 2.968e-35
Identity = 69/137 (50.36%), Postives = 93/137 (67.88%), Query Frame = 0
Query:  127 METQHEDMIHDAQLDYYGKKLATCSSDRTIKIFEVTGGQTPSSSPPYTIQAHSGPVWQVAWAHPRWGCLVASASYDGTVLIHRENKEQGV----WDTGVVHQGLENQSVNSIAFVRLPPSLSPFLPPSLPPSFLPSL 259
            +ET H+DMIHDAQLDYYGK+LATCSSDRT+K+F+V  G T  S+  +T++ H+GPVWQVAWAHP++G ++AS+SYDG VLI +E + QG     W T +    L + SVNS+++   P  L   L  +     L  L
Sbjct:   12 IETAHDDMIHDAQLDYYGKRLATCSSDRTVKVFDVVDGDTQRSA-GHTLKGHTGPVWQVAWAHPKYGHILASSSYDGKVLIWKEQQGQGASAGGW-TKIKEHTLHSASVNSVSWA--PHELGAILACASSDGKLSVL 144          
BLAST of EWM23056.1 vs. NCBI_GenBank
Match: gi|751051285|gb|KIK86600.1| (hypothetical protein PAXRUDRAFT_831899 [Paxillus rubicundulus Ve08.2h10])

HSP 1 Score: 137.502 bits (345), Expect = 4.247e-35
Identity = 69/136 (50.74%), Postives = 89/136 (65.44%), Query Frame = 0
Query:  127 METQHEDMIHDAQLDYYGKKLATCSSDRTIKIFEVTGGQTPSSSPPYTIQAHSGPVWQVAWAHPRWGCLVASASYDGTVLIHRENKE---QGVWDTGVVHQGLENQSVNSIAFVRLPPSLSPFLPPSLPPSFLPSL 259
            +ET HEDMIHDAQLDYYGK+LATCSSDRT+K+F+V  G+   S+   T++ H+GPVWQVAWAHP++G ++AS SYDG VL+ RE  +    G W T V    +   SVNSI++   P  L   L  +     L  L
Sbjct:   12 IETAHEDMIHDAQLDYYGKRLATCSSDRTVKVFDVVDGEASKSTIGQTLKGHTGPVWQVAWAHPKFGNILASCSYDGKVLVWREQTQGPSAGGW-TKVKEHAMHTASVNSISWA--PHELGAILACASSDGKLSVL 144          
BLAST of EWM23056.1 vs. NCBI_GenBank
Match: gi|751003783|gb|KIK45891.1| (hypothetical protein CY34DRAFT_801043 [Suillus luteus UH-Slu-Lm8-n1])

HSP 1 Score: 136.346 bits (342), Expect = 9.372e-35
Identity = 72/136 (52.94%), Postives = 91/136 (66.91%), Query Frame = 0
Query:  127 METQHEDMIHDAQLDYYGKKLATCSSDRTIKIFEVTGGQTPSSSPPYTIQAHSGPVWQVAWAHPRWGCLVASASYDGTVLIHRENKEQGVWDTG---VVHQGLENQSVNSIAFVRLPPSLSPFLPPSLPPSFLPSL 259
            +ET HEDMIHDAQLDYYGK+LATCSSDRT+K+F+V GG+ P  S  +T++ H+GPVWQVAWAHP++G ++AS SYDG VLI  E + QG  D G   V    L   SVNS+++   P  L   L  +     L  L
Sbjct:   12 IETAHEDMIHDAQLDYYGKRLATCSSDRTVKVFDVIGGE-PLKSSGHTLKGHTGPVWQVAWAHPKFGHILASCSYDGKVLIWGE-RSQGTADGGWTRVKEHTLHTASVNSVSWA--PHELGAMLACASSDGKLSVL 143          
BLAST of EWM23056.1 vs. NCBI_GenBank
Match: gi|749899794|gb|KIJ67346.1| (hypothetical protein HYDPIDRAFT_127263 [Hydnomerulius pinastri MD-312])

HSP 1 Score: 135.961 bits (341), Expect = 1.675e-34
Identity = 70/136 (51.47%), Postives = 89/136 (65.44%), Query Frame = 0
Query:  127 METQHEDMIHDAQLDYYGKKLATCSSDRTIKIFEVTGGQTPSSSPPYTIQAHSGPVWQVAWAHPRWGCLVASASYDGTVLIHRENKE---QGVWDTGVVHQGLENQSVNSIAFVRLPPSLSPFLPPSLPPSFLPSL 259
            +ET HEDMIHDAQLDYYGK+LATCSSDRT+K+F+V  G+   S+   T++ H+GPVWQVAWAHP++G ++AS SYDG VLI RE  +    G W T V    L   SVNS+++   P  L   L  +     L  L
Sbjct:   12 IETAHEDMIHDAQLDYYGKRLATCSSDRTVKVFDVVDGEPSKSTGGQTLKGHTGPVWQVAWAHPKFGNILASCSYDGKVLIWREQSQGPATGGW-TKVKEHTLHTASVNSVSWA--PHELGAILACASSDGKLSVL 144          
BLAST of EWM23056.1 vs. NCBI_GenBank
Match: gi|568444126|ref|XP_006457176.1| (hypothetical protein AGABI2DRAFT_196016 [Agaricus bisporus var. bisporus H97] >gi|598001223|ref|XP_007334668.1| hypothetical protein AGABI1DRAFT_116784 [Agaricus bisporus var. burnettii JB137-S8] >gi|409074311|gb|EKM74713.1| hypothetical protein AGABI1DRAFT_116784 [Agaricus bisporus var. burnettii JB137-S8] >gi|426192383|gb|EKV42320.1| hypothetical protein AGABI2DRAFT_196016 [Agaricus bisporus var. bisporus H97])

HSP 1 Score: 135.576 bits (340), Expect = 1.942e-34
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 0
Query:  127 METQHEDMIHDAQLDYYGKKLATCSSDRTIKIFEVTGGQTPSSSPPYTIQAHSGPVWQVAWAHPRWGCLVASASYDGTVLIHRENKEQGVWDTGVVHQGLENQSVNSIAF 236
            +ET HEDM+HDAQLDYYGK+LATCSSDRT+++F+V  G+   SS  +T++ H+GPVWQV WAHP++G ++AS SYDG VLI ++   QG W   +    L   SVNSI++
Sbjct:   10 IETSHEDMVHDAQLDYYGKRLATCSSDRTVRVFDVVDGEPQRSSSGHTLKGHTGPVWQVGWAHPKYGNILASCSYDGKVLIWKDQTPQGGW-IKIGEHSLHTASVNSISW 118          
BLAST of EWM23056.1 vs. NCBI_GenBank
Match: gi|1103356226|gb|OJA18963.1| (hypothetical protein AZE42_06043 [Rhizopogon vesiculosus])

HSP 1 Score: 140.969 bits (354), Expect = 2.315e-34
Identity = 67/110 (60.91%), Postives = 84/110 (76.36%), Query Frame = 0
Query:  127 METQHEDMIHDAQLDYYGKKLATCSSDRTIKIFEVTGGQTPSSSPPYTIQAHSGPVWQVAWAHPRWGCLVASASYDGTVLIHRENKEQGVWDTGVVHQGLENQSVNSIAF 236
            +ET HEDMIHDAQLDYYGK+LATCSSDRT+K+F+V  G+ PS S  +T++ H+GPVWQVAWAHP++G ++AS SYDG VLI RE    G W T V    L   SVNS+++
Sbjct:   12 IETAHEDMIHDAQLDYYGKRLATCSSDRTVKVFDVIDGE-PSKSSGHTLKGHTGPVWQVAWAHPKFGHILASCSYDGKVLIWREQPAGG-W-TKVKEHTLHTASVNSVSW 118          
The following BLAST results are available for this feature:
BLAST of EWM23056.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103868|gb|EWM23056.1|0.000e+0100.00protein transport protein sec13, partial [Nannochl... [more]
gi|1023190906|gb|KZS88497.1|2.595e-3755.47WD40 repeat-like protein [Sistotremastrum niveocre... [more]
gi|1035383160|gb|OAX39702.1|7.881e-3654.14WD40 repeat-like protein [Rhizopogon vinicolor AM-... [more]
gi|648153039|gb|KDR66878.1|1.022e-3558.77hypothetical protein GALMADRAFT_258759 [Galerina m... [more]
gi|1021837597|gb|KZP25899.1|2.968e-3550.36WD40 repeat-like protein [Fibularhizoctonia sp. CB... [more]
gi|751051285|gb|KIK86600.1|4.247e-3550.74hypothetical protein PAXRUDRAFT_831899 [Paxillus r... [more]
gi|751003783|gb|KIK45891.1|9.372e-3552.94hypothetical protein CY34DRAFT_801043 [Suillus lut... [more]
gi|749899794|gb|KIJ67346.1|1.675e-3451.47hypothetical protein HYDPIDRAFT_127263 [Hydnomerul... [more]
gi|568444126|ref|XP_006457176.1|1.942e-3455.45hypothetical protein AGABI2DRAFT_196016 [Agaricus ... [more]
gi|1103356226|gb|OJA18963.1|2.315e-3460.91hypothetical protein AZE42_06043 [Rhizopogon vesic... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7637rna7637Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications