EWM23085.1, cds7588 (CDS) Nannochloropsis gaditana

Overview
NameEWM23085.1
Unique Namecds7588
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:366224..366520 +
Alignment locationCM002472.1:366767..366877 +
Alignment locationCM002472.1:367721..367798 +
Alignment locationCM002472.1:367895..368009 +
Alignment locationCM002472.1:368247..368290 +
Alignment locationCM002472.1:368476..368619 +

Link to JBrowse

Properties
Property NameValue
End range.
End range368619
Protein idEWM23085.1
Productmalic enzyme
Partialtrue
Orig transcript idgnl|cribi|Naga_100957g1.2658.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:366224..366520 +
CM002472.1supercontigCM002472.1:366767..366877 +
CM002472.1supercontigCM002472.1:367721..367798 +
CM002472.1supercontigCM002472.1:367895..368009 +
CM002472.1supercontigCM002472.1:368247..368290 +
CM002472.1supercontigCM002472.1:368476..368619 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
GO:0006108malate metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0004471malate dehydrogenase (decarboxylating) (NAD+) activity
GO:0004470malic enzyme activity
Vocabulary: INTERPRO
TermDefinition
IPR012301Malic_N_dom
IPR001891Malic_OxRdtase
Homology
BLAST of EWM23085.1 vs. NCBI_GenBank
Match: gi|585103939|gb|EWM23085.1| (malic enzyme, partial [Nannochloropsis gaditana])

HSP 1 Score: 545.814 bits (1405), Expect = 0.000e+0
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
Query:    1 MLAHAARLPGLSGLPPRHAFSTLSRVSLSPLAMIGGRCQGRRQDGVGNHQQRQVGSPRRAFSSQHHSTQSLTCPLHPVHWKGHNYKPLLVKKRGVDIVQDPLYNKGTGFQHGERDRLNIRGLLPPRYLDFKTQIDRVMSNLRNQGDDMRKHIYLTELHDRNETLFHRVIVDNIEELAPIIYTPTVGRACVEFGQHFRRPRGMYFSTMDRGHFASMMYNWPQREVHVIVVTDGSRILGLGDLGANGAGIPIGKLALYCAAGKEK 263
            MLAHAARLPGLSGLPPRHAFSTLSRVSLSPLAMIGGRCQGRRQDGVGNHQQRQVGSPRRAFSSQHHSTQSLTCPLHPVHWKGHNYKPLLVKKRGVDIVQDPLYNKGTGFQHGERDRLNIRGLLPPRYLDFKTQIDRVMSNLRNQGDDMRKHIYLTELHDRNETLFHRVIVDNIEELAPIIYTPTVGRACVEFGQHFRRPRGMYFSTMDRGHFASMMYNWPQREVHVIVVTDGSRILGLGDLGANGAGIPIGKLALYCAAGKEK
Sbjct:    1 MLAHAARLPGLSGLPPRHAFSTLSRVSLSPLAMIGGRCQGRRQDGVGNHQQRQVGSPRRAFSSQHHSTQSLTCPLHPVHWKGHNYKPLLVKKRGVDIVQDPLYNKGTGFQHGERDRLNIRGLLPPRYLDFKTQIDRVMSNLRNQGDDMRKHIYLTELHDRNETLFHRVIVDNIEELAPIIYTPTVGRACVEFGQHFRRPRGMYFSTMDRGHFASMMYNWPQREVHVIVVTDGSRILGLGDLGANGAGIPIGKLALYCAAGKEK 263          
BLAST of EWM23085.1 vs. NCBI_GenBank
Match: gi|589908240|dbj|BAO52744.1| (NAD-dependent malic enzyme [Thalassiosira pseudonana])

HSP 1 Score: 259.61 bits (662), Expect = 1.283e-79
Identity = 117/174 (67.24%), Postives = 143/174 (82.18%), Query Frame = 0
Query:   87 PLLVKKRGVDIVQDPLYNKGTGFQHGERDRLNIRGLLPPRYLDFKTQIDRVMSNLRNQGDDMRKHIYLTELHDRNETLFHRVIVDNIEELAPIIYTPTVGRACVEFGQHFRRPRGMYFSTMDRGHFASMMYNWPQREVHVIVVTDGSRILGLGDLGANGAGIPIGKLALYCAAG 260
            P+ V  RG +I+ +PL+NK T F+ GERDRL  RGLLPPR L+ K Q  R++  +R +   +RK++ L E+HDRNETL+HR++VD+IEE+APIIYTPTVG+AC EFG  FRRPRGMYF   DRGH A+M+YNWPQ++VHVIVVTDGSRILGLGDLGANG GIPIGKL+LYCAAG
Sbjct:   10 PISVNSRGSEILNNPLFNKSTAFKGGERDRLRFRGLLPPRRLNMKVQKQRILEEIRAEDSMIRKNMILEEVHDRNETLYHRILVDHIEEMAPIIYTPTVGQACKEFGMRFRRPRGMYFCEEDRGHMAAMVYNWPQKDVHVIVVTDGSRILGLGDLGANGMGIPIGKLSLYCAAG 183          
BLAST of EWM23085.1 vs. NCBI_GenBank
Match: gi|1210516779|dbj|GAX24268.1| (malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [Fistulifera solaris])

HSP 1 Score: 259.225 bits (661), Expect = 3.691e-79
Identity = 121/185 (65.41%), Postives = 145/185 (78.38%), Query Frame = 0
Query:   79 HWKGHN---YKPLLVKKRGVDIVQDPLYNKGTGFQHGERDRLNIRGLLPPRYLDFKTQIDRVMSNLRNQGDDMRKHIYLTELHDRNETLFHRVIVDNIEELAPIIYTPTVGRACVEFGQHFRRPRGMYFSTMDRGHFASMMYNWPQREVHVIVVTDGSRILGLGDLGANGAGIPIGKLALYCAAG 260
             W G       PL V  RG DI+ +PLYNKGT F+ GERDRL  RGLLP R ++  +Q  R +  LR +   ++K+I L +LHDRNETL+HRV+VD+IEE+AP+IYTPTVG+AC+EFG  FRRPRGMYFS  DRGH A+M+YNWP ++VHVIVVTDGSRILGLGDLGANG GIPIGKL+LYCAAG
Sbjct:   38 EWAGCKRSFMAPLRVAARGADILYNPLYNKGTAFKSGERDRLGFRGLLPSRAMNIHSQKARFLLALRAETSAIKKNIMLEDLHDRNETLYHRVLVDHIEEMAPLIYTPTVGQACLEFGARFRRPRGMYFSEEDRGHMAAMVYNWPHKDVHVIVVTDGSRILGLGDLGANGMGIPIGKLSLYCAAG 222          
BLAST of EWM23085.1 vs. NCBI_GenBank
Match: gi|669158198|ref|XP_008614661.1| (hypothetical protein SDRG_10450 [Saprolegnia diclina VS20] >gi|530733691|gb|EQC31933.1| hypothetical protein SDRG_10450 [Saprolegnia diclina VS20])

HSP 1 Score: 258.455 bits (659), Expect = 6.610e-79
Identity = 116/174 (66.67%), Postives = 142/174 (81.61%), Query Frame = 0
Query:   87 PLLVKKRGVDIVQDPLYNKGTGFQHGERDRLNIRGLLPPRYLDFKTQIDRVMSNLRNQGDDMRKHIYLTELHDRNETLFHRVIVDNIEELAPIIYTPTVGRACVEFGQHFRRPRGMYFSTMDRGHFASMMYNWPQREVHVIVVTDGSRILGLGDLGANGAGIPIGKLALYCAAG 260
            P+   KRG+DIV DPLYNKGTGF+  ERDRL +RGL+PPR L+ KTQ++++    + + D +RK I+L+EL +RNETLF R+++DNIEE+AP++YTPTVG+ C +FG  FRRPRGMYFS+ DR  FASMMYNWP  +V VIVVTDGSRILGLGDLG NG GIPIGKLALY AAG
Sbjct:   46 PVRAGKRGIDIVHDPLYNKGTGFKAVERDRLGLRGLVPPRRLNMKTQLEKLYDLFQQEPDPLRKSIFLSELQNRNETLFFRLLIDNIEEMAPVVYTPTVGQVCQKFGSMFRRPRGMYFSSADRSQFASMMYNWPSDDVEVIVVTDGSRILGLGDLGVNGMGIPIGKLALYTAAG 219          
BLAST of EWM23085.1 vs. NCBI_GenBank
Match: gi|813177892|ref|XP_012205415.1| (hypothetical protein SPRG_20891 [Saprolegnia parasitica CBS 223.65] >gi|641529770|gb|KDO23927.1| hypothetical protein SPRG_20891 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 255.373 bits (651), Expect = 1.249e-78
Identity = 116/174 (66.67%), Postives = 141/174 (81.03%), Query Frame = 0
Query:   87 PLLVKKRGVDIVQDPLYNKGTGFQHGERDRLNIRGLLPPRYLDFKTQIDRVMSNLRNQGDDMRKHIYLTELHDRNETLFHRVIVDNIEELAPIIYTPTVGRACVEFGQHFRRPRGMYFSTMDRGHFASMMYNWPQREVHVIVVTDGSRILGLGDLGANGAGIPIGKLALYCAAG 260
            P+   KRG+DIV DPLYNKGTGF+  ERDRL +RGL+PPR L  KTQ++++    + + D +RK I+L+EL +RNETLF R+++DNIEE+AP++YTPTVG+ C +FG  FRRPRGMYFS+ DR  FASMMYNWP  +V VIVVTDGSRILGLGDLG NG GIPIGKLALY AAG
Sbjct:   46 PVRAGKRGIDIVHDPLYNKGTGFKAVERDRLGLRGLVPPRRLVMKTQLEKLYDLFQQEPDPLRKSIFLSELQNRNETLFFRLLIDNIEEMAPVVYTPTVGQVCQKFGSMFRRPRGMYFSSADRSQFASMMYNWPCDDVEVIVVTDGSRILGLGDLGVNGMGIPIGKLALYTAAG 219          
BLAST of EWM23085.1 vs. NCBI_GenBank
Match: gi|219112277|ref|XP_002177890.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410775|gb|EEC50704.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 257.684 bits (657), Expect = 3.412e-78
Identity = 134/254 (52.76%), Postives = 167/254 (65.75%), Query Frame = 0
Query:   20 FSTLSRVSLSPLAMIGGRCQGRRQDG-VGNHQQRQVGSPRRAFSSQHHSTQSLTC--------PLHPV-HWKGHNYK---PLLVKKRGVDIVQDPLYNKGTGFQHGERDRLNIRGLLPPRYLDFKTQIDRVMSNLRNQGDDMRKHIYLTELHDRNETLFHRVIVDNIEELAPIIYTPTVGRACVEFGQHFRRPRGMYFSTMDRGHFASMMYNWPQREVHVIVVTDGSRILGLGDLGANGAGIPIGKLALYCAAG 260
             S+  R SL  L  +  R   R+    +  +    V     AFSSQ    + LT         P+H    W G       P+ +  RG DI+ DPLYNKGT F+ GERDRL  RG+LP R ++   Q +R +  LR +  ++RK++ L +LHDRNETL+HRV+VD+IEE+AP IYTPTVG+AC+EF   +RRPRGMYF+  DRGH A+M+YNWP R+VHVI VTDGSRILGLGDLGANG GIPIGKLALYCAAG
Sbjct:    2 ISSACRGSLKSLCSVQLRSNTRQHASLISCNNSPNVKRFSTAFSSQTDG-EVLTVGGALSGEEPIHETGEWAGCKRSFMIPIRISVRGTDILLDPLYNKGTAFKTGERDRLRFRGMLPHRIMNIHLQKERFLQALRAEDSNIRKNVMLEDLHDRNETLYHRVLVDHIEEMAPYIYTPTVGQACMEFATRYRRPRGMYFTEEDRGHMAAMVYNWPHRDVHVICVTDGSRILGLGDLGANGMGIPIGKLALYCAAG 254          
BLAST of EWM23085.1 vs. NCBI_GenBank
Match: gi|813211780|ref|XP_012210381.1| (hypothetical protein SPRG_15810 [Saprolegnia parasitica CBS 223.65] >gi|641524289|gb|KDO18911.1| hypothetical protein SPRG_15810 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 255.373 bits (651), Expect = 8.857e-78
Identity = 116/174 (66.67%), Postives = 141/174 (81.03%), Query Frame = 0
Query:   87 PLLVKKRGVDIVQDPLYNKGTGFQHGERDRLNIRGLLPPRYLDFKTQIDRVMSNLRNQGDDMRKHIYLTELHDRNETLFHRVIVDNIEELAPIIYTPTVGRACVEFGQHFRRPRGMYFSTMDRGHFASMMYNWPQREVHVIVVTDGSRILGLGDLGANGAGIPIGKLALYCAAG 260
            P+   KRG+DIV DPLYNKGTGF+  ERDRL +RGL+PPR L  KTQ++++    + + D +RK I+L+EL +RNETLF R+++DNIEE+AP++YTPTVG+ C +FG  FRRPRGMYFS+ DR  FASMMYNWP  +V VIVVTDGSRILGLGDLG NG GIPIGKLALY AAG
Sbjct:   46 PVRAGKRGIDIVHDPLYNKGTGFKAVERDRLGLRGLVPPRRLVMKTQLEKLYDLFQQEPDPLRKSIFLSELQNRNETLFFRLLIDNIEEMAPVVYTPTVGQVCQKFGSMFRRPRGMYFSSADRSQFASMMYNWPCDDVEVIVVTDGSRILGLGDLGVNGMGIPIGKLALYTAAG 219          
BLAST of EWM23085.1 vs. NCBI_GenBank
Match: gi|1210512510|dbj|GAX28367.1| (malate dehydrogenase [Fistulifera solaris])

HSP 1 Score: 261.922 bits (668), Expect = 6.592e-77
Identity = 121/185 (65.41%), Postives = 145/185 (78.38%), Query Frame = 0
Query:   79 HWKGHN---YKPLLVKKRGVDIVQDPLYNKGTGFQHGERDRLNIRGLLPPRYLDFKTQIDRVMSNLRNQGDDMRKHIYLTELHDRNETLFHRVIVDNIEELAPIIYTPTVGRACVEFGQHFRRPRGMYFSTMDRGHFASMMYNWPQREVHVIVVTDGSRILGLGDLGANGAGIPIGKLALYCAAG 260
             W G       PL V  RG DI+ +PLYNKGT F+ GERDRL  RGLLP R ++  +Q  R +  LR +   ++K+I L +LHDRNETL+HRV+VD+IEE+AP+IYTPTVG+AC+EFG  FRRPRGMYFS  DRGH A+M+YNWP ++VHVIVVTDGSRILGLGDLGANG GIPIGKL+LYCAAG
Sbjct:   78 EWAGCKRSFMAPLRVAARGADILYNPLYNKGTAFKSGERDRLGFRGLLPSRAMNIHSQKARFLLALRAETSAIKKNIMLEDLHDRNETLYHRVLVDHIEEMAPLIYTPTVGQACLEFGARFRRPRGMYFSEEDRGHMAAMVYNWPHKDVHVIVVTDGSRILGLGDLGANGMGIPIGKLSLYCAAG 262          
BLAST of EWM23085.1 vs. NCBI_GenBank
Match: gi|1173953286|gb|OQS00837.1| (NAD-dependent malic enzyme [Achlya hypogyna])

HSP 1 Score: 253.062 bits (645), Expect = 7.321e-77
Identity = 116/174 (66.67%), Postives = 139/174 (79.89%), Query Frame = 0
Query:   87 PLLVKKRGVDIVQDPLYNKGTGFQHGERDRLNIRGLLPPRYLDFKTQIDRVMSNLRNQGDDMRKHIYLTELHDRNETLFHRVIVDNIEELAPIIYTPTVGRACVEFGQHFRRPRGMYFSTMDRGHFASMMYNWPQREVHVIVVTDGSRILGLGDLGANGAGIPIGKLALYCAAG 260
            P+   KRG+DIV DPLYNKGTGF+  ERDRL +RGL+PPR L+ KTQ+ ++      + D +RK I+L+EL +RNETLF R+++DNIEE+AP++YTPTVG  C +FG  FRRPRGMYFS+ DR  FASMMYNWP  +V VIVVTDGSRILGLGDLG NG GIPIGKLALY AAG
Sbjct:   45 PVRSGKRGIDIVHDPLYNKGTGFKASERDRLGLRGLVPPRRLNMKTQLAKLYDLFHEEPDPLRKSIFLSELQNRNETLFFRLLIDNIEEMAPVVYTPTVGLVCQKFGSMFRRPRGMYFSSDDRSQFASMMYNWPCDDVEVIVVTDGSRILGLGDLGVNGMGIPIGKLALYTAAG 218          
BLAST of EWM23085.1 vs. NCBI_GenBank
Match: gi|224001756|ref|XP_002290550.1| (NAD dependent malic enzyme [Thalassiosira pseudonana CCMP1335] >gi|220973972|gb|EED92302.1| NAD dependent malic enzyme [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 251.906 bits (642), Expect = 9.602e-77
Identity = 113/166 (68.07%), Postives = 138/166 (83.13%), Query Frame = 0
Query:   95 VDIVQDPLYNKGTGFQHGERDRLNIRGLLPPRYLDFKTQIDRVMSNLRNQGDDMRKHIYLTELHDRNETLFHRVIVDNIEELAPIIYTPTVGRACVEFGQHFRRPRGMYFSTMDRGHFASMMYNWPQREVHVIVVTDGSRILGLGDLGANGAGIPIGKLALYCAAG 260
             +I+ +PL+NK T F+ GERDRL  RGLLPPR L+ K Q  R++  +R +   +RK++ L E+HDRNETL+HR++VD+IEE+APIIYTPTVG+AC EFG  FRRPRGMYF   DRGH A+M+YNWPQ++VHVIVVTDGSRILGLGDLGANG GIPIGKL+LYCAAG
Sbjct:   10 TEILNNPLFNKSTAFKGGERDRLRFRGLLPPRRLNMKVQKQRILEEIRAEDSMIRKNMILEEVHDRNETLYHRILVDHIEEMAPIIYTPTVGQACKEFGMRFRRPRGMYFCEEDRGHMAAMVYNWPQKDVHVIVVTDGSRILGLGDLGANGMGIPIGKLSLYCAAG 175          
The following BLAST results are available for this feature:
BLAST of EWM23085.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103939|gb|EWM23085.1|0.000e+0100.00malic enzyme, partial [Nannochloropsis gaditana][more]
gi|589908240|dbj|BAO52744.1|1.283e-7967.24NAD-dependent malic enzyme [Thalassiosira pseudona... [more]
gi|1210516779|dbj|GAX24268.1|3.691e-7965.41malate dehydrogenase (oxaloacetate-decarboxylating... [more]
gi|669158198|ref|XP_008614661.1|6.610e-7966.67hypothetical protein SDRG_10450 [Saprolegnia dicli... [more]
gi|813177892|ref|XP_012205415.1|1.249e-7866.67hypothetical protein SPRG_20891 [Saprolegnia paras... [more]
gi|219112277|ref|XP_002177890.1|3.412e-7852.76predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|813211780|ref|XP_012210381.1|8.857e-7866.67hypothetical protein SPRG_15810 [Saprolegnia paras... [more]
gi|1210512510|dbj|GAX28367.1|6.592e-7765.41malate dehydrogenase [Fistulifera solaris][more]
gi|1173953286|gb|OQS00837.1|7.321e-7766.67NAD-dependent malic enzyme [Achlya hypogyna][more]
gi|224001756|ref|XP_002290550.1|9.602e-7768.07NAD dependent malic enzyme [Thalassiosira pseudona... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7608rna7608Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications