EWM23094.1, cds7579 (CDS) Nannochloropsis gaditana

Overview
NameEWM23094.1
Unique Namecds7579
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:340752..340769 +
Alignment locationCM002472.1:340937..341227 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23094.1
Productatp-binding cassette superfamily
Orig transcript idgnl|cribi|Naga_102758g1.2741.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:340752..340769 +
CM002472.1supercontigCM002472.1:340937..341227 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005215transporter activity
GO:0000166nucleotide binding
GO:0016887ATPase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003439ABC_transporter-like
IPR027417P-loop_NTPase
Homology
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|585103955|gb|EWM23094.1| (atp-binding cassette superfamily [Nannochloropsis gaditana])

HSP 1 Score: 211.46 bits (537), Expect = 2.172e-69
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
Query:    1 MFEYQCIFHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEVFLLTVDGFR 102
            MFEYQCIFHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEVFLLTVDGFR
Sbjct:    1 MFEYQCIFHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEVFLLTVDGFR 102          
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|673026672|ref|XP_008867297.1| (hypothetical protein H310_04637 [Aphanomyces invadans] >gi|574477344|gb|ETW04341.1| hypothetical protein H310_04637 [Aphanomyces invadans])

HSP 1 Score: 120.168 bits (300), Expect = 1.813e-29
Identity = 54/89 (60.67%), Postives = 66/89 (74.16%), Query Frame = 0
Query:    5 QCIFHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEV 93
            Q  FHYPARP  +VC  Y L +KAGE VAL GPSGSGKST +SLL R++DP+ G + LDGHDLRS N+K+LR  +G VGQEP  +S  +
Sbjct:  412 QIEFHYPARPEVQVCKGYSLHIKAGEKVALVGPSGSGKSTIVSLLERYYDPLQGVVKLDGHDLRSFNVKWLRAQVGLVGQEPSLFSCSI 500          

HSP 2 Score: 103.605 bits (257), Expect = 1.090e-23
Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 0
Query:    5 QCIFHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
            Q  F YP+RPH  + D Y L V +G TVAL G SG GKSTAISLL RF+DP+ G + LDG D+R+LNL++LR  I  VGQEP
Sbjct: 1051 QLKFAYPSRPHAIIYDGYSLKVPSGSTVALVGASGCGKSTAISLLERFYDPIEGRVLLDGVDIRTLNLQWLRQHISLVGQEP 1132          
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|673015494|ref|XP_008861708.1| (hypothetical protein H310_00637 [Aphanomyces invadans] >gi|574483306|gb|ETW10297.1| hypothetical protein H310_00637 [Aphanomyces invadans])

HSP 1 Score: 119.783 bits (299), Expect = 2.524e-29
Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 0
Query:    5 QCIFHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEV 93
            Q +FHYP+RP  +VC  Y L + AGE VAL GPSGSGKST +SLL RF+DP+AG++TLDG DLR LN+ +LR  IG VGQEP  ++  +
Sbjct:  397 QVVFHYPSRPQVQVCQGYTLRIAAGEKVALVGPSGSGKSTIVSLLERFYDPIAGAVTLDGVDLRELNVSWLRQQIGLVGQEPCLFADSI 485          

HSP 2 Score: 109.768 bits (273), Expect = 7.996e-26
Identity = 53/79 (67.09%), Postives = 59/79 (74.68%), Query Frame = 0
Query:    8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
            F YP+RPH  V   Y L++ +G TVAL G SGSGKSTAI LL RF+DPV GSI LDG DLRSLNL +LRD I  VGQEP
Sbjct: 1072 FAYPSRPHTAVYKDYSLTIPSGSTVALVGASGSGKSTAIGLLERFYDPVEGSILLDGIDLRSLNLHWLRDHISLVGQEP 1150          
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|673030172|ref|XP_008869047.1| (hypothetical protein H310_05955 [Aphanomyces invadans] >gi|574475442|gb|ETW02442.1| hypothetical protein H310_05955 [Aphanomyces invadans])

HSP 1 Score: 119.013 bits (297), Expect = 4.098e-29
Identity = 51/86 (59.30%), Postives = 67/86 (77.91%), Query Frame = 0
Query:    8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEV 93
            FHYP+RP  +VC+ Y + ++AGE VAL GPSGSGKST +SLL R++DP+ G++ LDGHDLRSLN+K+LR   G VGQEP  +S  +
Sbjct:  414 FHYPSRPDVQVCNGYSVKIQAGEKVALVGPSGSGKSTIVSLLERYYDPIEGTVKLDGHDLRSLNVKWLRAQFGLVGQEPALFSCSI 499          

HSP 2 Score: 100.908 bits (250), Expect = 1.048e-22
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 0
Query:    8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
            F YP+RPH+ + D Y L V +G TVAL G SG GKSTAIS+L RF+DP+ G + LDG D+R+LN+++LR  I  VGQEP
Sbjct: 1042 FAYPSRPHSIIYDGYSLKVPSGATVALVGASGCGKSTAISMLERFYDPLEGCVLLDGVDIRTLNVQWLRQHISLVGQEP 1120          
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|1173941005|gb|OQR90269.1| (ATP-binding Cassette (ABC) Superfamily [Achlya hypogyna])

HSP 1 Score: 119.013 bits (297), Expect = 4.303e-29
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 0
Query:    8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEV 93
            F+YPARP  RVC  Y +S+ AGE VAL GPSGSGKST +SLL RF+DP  G++ LDGHDL++LN+K+LR  +G VGQEP  +S  +
Sbjct:  407 FYYPARPEVRVCSGYSISIAAGEKVALVGPSGSGKSTIVSLLERFYDPTRGTVYLDGHDLKTLNVKWLRQQVGLVGQEPSLFSVSI 492          

HSP 2 Score: 97.4413 bits (241), Expect = 1.592e-21
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 0
Query:    8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
            F YP+RP  ++  +Y L + +G TVAL G SG GKSTAI+L+ RF+DPV G++ LDG D++SLNL++LR  I  VGQEP
Sbjct: 1050 FAYPSRPDAKIYSNYNLVIPSGATVALVGASGCGKSTAIALIERFYDPVEGTVFLDGVDIKSLNLRWLRTHISLVGQEP 1128          
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|698787726|ref|XP_009826895.1| (hypothetical protein H257_04188 [Aphanomyces astaci] >gi|574117984|gb|ETV83465.1| hypothetical protein H257_04188 [Aphanomyces astaci])

HSP 1 Score: 118.627 bits (296), Expect = 5.815e-29
Identity = 52/86 (60.47%), Postives = 67/86 (77.91%), Query Frame = 0
Query:    8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEV 93
            F YP+RPH +VC+ Y L +KAGE VAL GPSGSGKST +SLL R++DPV G++ LDGHDL++LN+K+LR   G VGQEP  +S  +
Sbjct:  415 FQYPSRPHVQVCNGYSLHIKAGEKVALVGPSGSGKSTIVSLLERYYDPVDGTVKLDGHDLKTLNVKWLRAQFGLVGQEPCLFSCSI 500          

HSP 2 Score: 105.145 bits (261), Expect = 3.531e-24
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0
Query:    8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
            F YP+RPH  + D Y L V +G TVAL G SG GKSTAISL+ RF+DPV GS+ LDG D+RSLNL++LR  I  VGQEP
Sbjct: 1058 FAYPSRPHAIIYDGYSLKVPSGATVALVGASGCGKSTAISLVERFYDPVEGSVLLDGVDIRSLNLQWLRQHISLVGQEP 1136          
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|566009300|gb|ETI32211.1| (hypothetical protein F443_20908, partial [Phytophthora parasitica P1569])

HSP 1 Score: 112.464 bits (280), Expect = 1.191e-28
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 0
Query:    8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
            F YP RP   V  HY L+++AG+TVA CGPSG GKST ISL+ RF+DPVAG + LDGH+++ LNL +LR  IG VGQEP
Sbjct:   10 FRYPTRPEINVLKHYNLTIEAGQTVAFCGPSGGGKSTIISLIERFYDPVAGEVLLDGHNIKDLNLGWLRSQIGLVGQEP 88          
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|1173959291|gb|OQS05543.1| (ATP-binding Cassette (ABC) Superfamily [Thraustotheca clavata])

HSP 1 Score: 117.857 bits (294), Expect = 1.228e-28
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 0
Query:    8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEV 93
            F+YPARP  +VC  Y L +KAGE VAL GPSGSGKST +SLL R++DP  G++ LDGHDL+SLN+K+LR  +G VGQEP  +S  +
Sbjct:  400 FYYPARPDVQVCKGYSLQIKAGEKVALVGPSGSGKSTIVSLLERYYDPTNGTVYLDGHDLKSLNVKWLRQQVGLVGQEPSLFSVSI 485          

HSP 2 Score: 101.293 bits (251), Expect = 6.834e-23
Identity = 44/79 (55.70%), Postives = 61/79 (77.22%), Query Frame = 0
Query:    8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
            F YP+RPH ++ ++Y L + +G TVAL G SG GKSTAISL+ RF+DP+ G++ LDG D+++LNL++LR  I  VGQEP
Sbjct: 1041 FAYPSRPHAKIYENYNLVIPSGSTVALVGASGCGKSTAISLIERFYDPIEGTVFLDGVDIKTLNLQWLRTHISLVGQEP 1119          
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|698790290|ref|XP_009828177.1| (hypothetical protein H257_05116 [Aphanomyces astaci] >gi|574117025|gb|ETV82508.1| hypothetical protein H257_05116 [Aphanomyces astaci])

HSP 1 Score: 117.472 bits (293), Expect = 1.491e-28
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 0
Query:    8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEV 93
            FHYPARP  +VC  Y L +KAGE VAL GPSGSGKST +SLL R++DP+ G + LDGHDL+ LN+K+LR  +G VGQEP  +S  +
Sbjct:  413 FHYPARPEVQVCKGYSLHIKAGEKVALVGPSGSGKSTIVSLLERYYDPLEGVVKLDGHDLKMLNVKWLRAQVGLVGQEPSLFSCSI 498          

HSP 2 Score: 100.138 bits (248), Expect = 2.237e-22
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 0
Query:    5 QCIFHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
            Q  F YP+RPH  + + Y L V +G TVAL G SG GKSTAI+LL RF+DP+ G + LDG D+R+LNL++LR  I  VGQEP
Sbjct: 1048 QLKFAYPSRPHAFIYNGYSLKVPSGATVALVGASGCGKSTAIALLERFYDPLEGQVLLDGVDIRTLNLQWLRQHISLVGQEP 1129          
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|1214708170|gb|OWZ19483.1| (ABC transporter [Phytophthora megakarya])

HSP 1 Score: 117.087 bits (292), Expect = 2.568e-28
Identity = 49/79 (62.03%), Postives = 66/79 (83.54%), Query Frame = 0
Query:    8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
            F YP+RP  +VC  Y L+++AGETVAL GPSGSGKST +SLL RF+DP++G++++DG D+R LN+K+LR  IG+VGQEP
Sbjct:  399 FAYPSRPEAKVCSEYSLTIRAGETVALVGPSGSGKSTIVSLLERFYDPLSGTVSIDGVDVRDLNVKWLRHQIGFVGQEP 477          

HSP 2 Score: 93.5893 bits (231), Expect = 3.783e-20
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 0
Query:    8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
            F YP+RP   +   Y L +  G+T+AL G SG GKST I+LL RF+DP AG +TLDG DLR L L +LRD I  V QEP
Sbjct: 1039 FAYPSRPEAPIYQGYNLKIAPGQTIALVGASGCGKSTVIALLERFYDPYAGMVTLDGVDLRQLQLPWLRDRISLVSQEP 1117          
The following BLAST results are available for this feature:
BLAST of EWM23094.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103955|gb|EWM23094.1|2.172e-69100.00atp-binding cassette superfamily [Nannochloropsis ... [more]
gi|673026672|ref|XP_008867297.1|1.813e-2960.67hypothetical protein H310_04637 [Aphanomyces invad... [more]
gi|673015494|ref|XP_008861708.1|2.524e-2959.55hypothetical protein H310_00637 [Aphanomyces invad... [more]
gi|673030172|ref|XP_008869047.1|4.098e-2959.30hypothetical protein H310_05955 [Aphanomyces invad... [more]
gi|1173941005|gb|OQR90269.1|4.303e-2960.47ATP-binding Cassette (ABC) Superfamily [Achlya hyp... [more]
gi|698787726|ref|XP_009826895.1|5.815e-2960.47hypothetical protein H257_04188 [Aphanomyces astac... [more]
gi|566009300|gb|ETI32211.1|1.191e-2862.03hypothetical protein F443_20908, partial [Phytopht... [more]
gi|1173959291|gb|OQS05543.1|1.228e-2860.47ATP-binding Cassette (ABC) Superfamily [Thraustoth... [more]
gi|698790290|ref|XP_009828177.1|1.491e-2860.47hypothetical protein H257_05116 [Aphanomyces astac... [more]
gi|1214708170|gb|OWZ19483.1|2.568e-2862.03ABC transporter [Phytophthora megakarya][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7599rna7599Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications