EWM23094.1, cds7579 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|585103955|gb|EWM23094.1| (atp-binding cassette superfamily [Nannochloropsis gaditana]) HSP 1 Score: 211.46 bits (537), Expect = 2.172e-69 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
Query: 1 MFEYQCIFHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEVFLLTVDGFR 102
MFEYQCIFHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEVFLLTVDGFR
Sbjct: 1 MFEYQCIFHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEVFLLTVDGFR 102
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|673026672|ref|XP_008867297.1| (hypothetical protein H310_04637 [Aphanomyces invadans] >gi|574477344|gb|ETW04341.1| hypothetical protein H310_04637 [Aphanomyces invadans]) HSP 1 Score: 120.168 bits (300), Expect = 1.813e-29 Identity = 54/89 (60.67%), Postives = 66/89 (74.16%), Query Frame = 0
Query: 5 QCIFHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEV 93
Q FHYPARP +VC Y L +KAGE VAL GPSGSGKST +SLL R++DP+ G + LDGHDLRS N+K+LR +G VGQEP +S +
Sbjct: 412 QIEFHYPARPEVQVCKGYSLHIKAGEKVALVGPSGSGKSTIVSLLERYYDPLQGVVKLDGHDLRSFNVKWLRAQVGLVGQEPSLFSCSI 500 HSP 2 Score: 103.605 bits (257), Expect = 1.090e-23 Identity = 49/82 (59.76%), Postives = 59/82 (71.95%), Query Frame = 0
Query: 5 QCIFHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
Q F YP+RPH + D Y L V +G TVAL G SG GKSTAISLL RF+DP+ G + LDG D+R+LNL++LR I VGQEP
Sbjct: 1051 QLKFAYPSRPHAIIYDGYSLKVPSGSTVALVGASGCGKSTAISLLERFYDPIEGRVLLDGVDIRTLNLQWLRQHISLVGQEP 1132
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|673015494|ref|XP_008861708.1| (hypothetical protein H310_00637 [Aphanomyces invadans] >gi|574483306|gb|ETW10297.1| hypothetical protein H310_00637 [Aphanomyces invadans]) HSP 1 Score: 119.783 bits (299), Expect = 2.524e-29 Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 0
Query: 5 QCIFHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEV 93
Q +FHYP+RP +VC Y L + AGE VAL GPSGSGKST +SLL RF+DP+AG++TLDG DLR LN+ +LR IG VGQEP ++ +
Sbjct: 397 QVVFHYPSRPQVQVCQGYTLRIAAGEKVALVGPSGSGKSTIVSLLERFYDPIAGAVTLDGVDLRELNVSWLRQQIGLVGQEPCLFADSI 485 HSP 2 Score: 109.768 bits (273), Expect = 7.996e-26 Identity = 53/79 (67.09%), Postives = 59/79 (74.68%), Query Frame = 0
Query: 8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
F YP+RPH V Y L++ +G TVAL G SGSGKSTAI LL RF+DPV GSI LDG DLRSLNL +LRD I VGQEP
Sbjct: 1072 FAYPSRPHTAVYKDYSLTIPSGSTVALVGASGSGKSTAIGLLERFYDPVEGSILLDGIDLRSLNLHWLRDHISLVGQEP 1150
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|673030172|ref|XP_008869047.1| (hypothetical protein H310_05955 [Aphanomyces invadans] >gi|574475442|gb|ETW02442.1| hypothetical protein H310_05955 [Aphanomyces invadans]) HSP 1 Score: 119.013 bits (297), Expect = 4.098e-29 Identity = 51/86 (59.30%), Postives = 67/86 (77.91%), Query Frame = 0
Query: 8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEV 93
FHYP+RP +VC+ Y + ++AGE VAL GPSGSGKST +SLL R++DP+ G++ LDGHDLRSLN+K+LR G VGQEP +S +
Sbjct: 414 FHYPSRPDVQVCNGYSVKIQAGEKVALVGPSGSGKSTIVSLLERYYDPIEGTVKLDGHDLRSLNVKWLRAQFGLVGQEPALFSCSI 499 HSP 2 Score: 100.908 bits (250), Expect = 1.048e-22 Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 0
Query: 8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
F YP+RPH+ + D Y L V +G TVAL G SG GKSTAIS+L RF+DP+ G + LDG D+R+LN+++LR I VGQEP
Sbjct: 1042 FAYPSRPHSIIYDGYSLKVPSGATVALVGASGCGKSTAISMLERFYDPLEGCVLLDGVDIRTLNVQWLRQHISLVGQEP 1120
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|1173941005|gb|OQR90269.1| (ATP-binding Cassette (ABC) Superfamily [Achlya hypogyna]) HSP 1 Score: 119.013 bits (297), Expect = 4.303e-29 Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 0
Query: 8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEV 93
F+YPARP RVC Y +S+ AGE VAL GPSGSGKST +SLL RF+DP G++ LDGHDL++LN+K+LR +G VGQEP +S +
Sbjct: 407 FYYPARPEVRVCSGYSISIAAGEKVALVGPSGSGKSTIVSLLERFYDPTRGTVYLDGHDLKTLNVKWLRQQVGLVGQEPSLFSVSI 492 HSP 2 Score: 97.4413 bits (241), Expect = 1.592e-21 Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 0
Query: 8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
F YP+RP ++ +Y L + +G TVAL G SG GKSTAI+L+ RF+DPV G++ LDG D++SLNL++LR I VGQEP
Sbjct: 1050 FAYPSRPDAKIYSNYNLVIPSGATVALVGASGCGKSTAIALIERFYDPVEGTVFLDGVDIKSLNLRWLRTHISLVGQEP 1128
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|698787726|ref|XP_009826895.1| (hypothetical protein H257_04188 [Aphanomyces astaci] >gi|574117984|gb|ETV83465.1| hypothetical protein H257_04188 [Aphanomyces astaci]) HSP 1 Score: 118.627 bits (296), Expect = 5.815e-29 Identity = 52/86 (60.47%), Postives = 67/86 (77.91%), Query Frame = 0
Query: 8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEV 93
F YP+RPH +VC+ Y L +KAGE VAL GPSGSGKST +SLL R++DPV G++ LDGHDL++LN+K+LR G VGQEP +S +
Sbjct: 415 FQYPSRPHVQVCNGYSLHIKAGEKVALVGPSGSGKSTIVSLLERYYDPVDGTVKLDGHDLKTLNVKWLRAQFGLVGQEPCLFSCSI 500 HSP 2 Score: 105.145 bits (261), Expect = 3.531e-24 Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0
Query: 8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
F YP+RPH + D Y L V +G TVAL G SG GKSTAISL+ RF+DPV GS+ LDG D+RSLNL++LR I VGQEP
Sbjct: 1058 FAYPSRPHAIIYDGYSLKVPSGATVALVGASGCGKSTAISLVERFYDPVEGSVLLDGVDIRSLNLQWLRQHISLVGQEP 1136
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|566009300|gb|ETI32211.1| (hypothetical protein F443_20908, partial [Phytophthora parasitica P1569]) HSP 1 Score: 112.464 bits (280), Expect = 1.191e-28 Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 0
Query: 8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
F YP RP V HY L+++AG+TVA CGPSG GKST ISL+ RF+DPVAG + LDGH+++ LNL +LR IG VGQEP
Sbjct: 10 FRYPTRPEINVLKHYNLTIEAGQTVAFCGPSGGGKSTIISLIERFYDPVAGEVLLDGHNIKDLNLGWLRSQIGLVGQEP 88
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|1173959291|gb|OQS05543.1| (ATP-binding Cassette (ABC) Superfamily [Thraustotheca clavata]) HSP 1 Score: 117.857 bits (294), Expect = 1.228e-28 Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 0
Query: 8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEV 93
F+YPARP +VC Y L +KAGE VAL GPSGSGKST +SLL R++DP G++ LDGHDL+SLN+K+LR +G VGQEP +S +
Sbjct: 400 FYYPARPDVQVCKGYSLQIKAGEKVALVGPSGSGKSTIVSLLERYYDPTNGTVYLDGHDLKSLNVKWLRQQVGLVGQEPSLFSVSI 485 HSP 2 Score: 101.293 bits (251), Expect = 6.834e-23 Identity = 44/79 (55.70%), Postives = 61/79 (77.22%), Query Frame = 0
Query: 8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
F YP+RPH ++ ++Y L + +G TVAL G SG GKSTAISL+ RF+DP+ G++ LDG D+++LNL++LR I VGQEP
Sbjct: 1041 FAYPSRPHAKIYENYNLVIPSGSTVALVGASGCGKSTAISLIERFYDPIEGTVFLDGVDIKTLNLQWLRTHISLVGQEP 1119
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|698790290|ref|XP_009828177.1| (hypothetical protein H257_05116 [Aphanomyces astaci] >gi|574117025|gb|ETV82508.1| hypothetical protein H257_05116 [Aphanomyces astaci]) HSP 1 Score: 117.472 bits (293), Expect = 1.491e-28 Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 0
Query: 8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEPGGYSSEV 93
FHYPARP +VC Y L +KAGE VAL GPSGSGKST +SLL R++DP+ G + LDGHDL+ LN+K+LR +G VGQEP +S +
Sbjct: 413 FHYPARPEVQVCKGYSLHIKAGEKVALVGPSGSGKSTIVSLLERYYDPLEGVVKLDGHDLKMLNVKWLRAQVGLVGQEPSLFSCSI 498 HSP 2 Score: 100.138 bits (248), Expect = 2.237e-22 Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 0
Query: 5 QCIFHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
Q F YP+RPH + + Y L V +G TVAL G SG GKSTAI+LL RF+DP+ G + LDG D+R+LNL++LR I VGQEP
Sbjct: 1048 QLKFAYPSRPHAFIYNGYSLKVPSGATVALVGASGCGKSTAIALLERFYDPLEGQVLLDGVDIRTLNLQWLRQHISLVGQEP 1129
BLAST of EWM23094.1 vs. NCBI_GenBank
Match: gi|1214708170|gb|OWZ19483.1| (ABC transporter [Phytophthora megakarya]) HSP 1 Score: 117.087 bits (292), Expect = 2.568e-28 Identity = 49/79 (62.03%), Postives = 66/79 (83.54%), Query Frame = 0
Query: 8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
F YP+RP +VC Y L+++AGETVAL GPSGSGKST +SLL RF+DP++G++++DG D+R LN+K+LR IG+VGQEP
Sbjct: 399 FAYPSRPEAKVCSEYSLTIRAGETVALVGPSGSGKSTIVSLLERFYDPLSGTVSIDGVDVRDLNVKWLRHQIGFVGQEP 477 HSP 2 Score: 93.5893 bits (231), Expect = 3.783e-20 Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 0
Query: 8 FHYPARPHNRVCDHYRLSVKAGETVALCGPSGSGKSTAISLLLRFFDPVAGSITLDGHDLRSLNLKFLRDCIGYVGQEP 86
F YP+RP + Y L + G+T+AL G SG GKST I+LL RF+DP AG +TLDG DLR L L +LRD I V QEP
Sbjct: 1039 FAYPSRPEAPIYQGYNLKIAPGQTIALVGASGCGKSTVIALLERFYDPYAGMVTLDGVDLRQLQLPWLRDRISLVSQEP 1117 The following BLAST results are available for this feature:
BLAST of EWM23094.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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