EWM23095.1, cds7575 (CDS) Nannochloropsis gaditana

Overview
NameEWM23095.1
Unique Namecds7575
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:333150..333386 -
Alignment locationCM002472.1:330220..332814 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23095.1
ProductLeucine-rich repeat, ribonuclease inhibitor subtype
Orig transcript idgnl|cribi|Naga_100334g2.8494.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:333150..333386 -
CM002472.1supercontigCM002472.1:330220..332814 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003590Leu-rich_rpt_RNase_inh_sub-typ
Homology
[Close]
BLAST of EWM23095.1 vs. NCBI_GenBank
Match: gi|585103957|gb|EWM23095.1| (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana])

HSP 1 Score: 1858.19 bits (4812), Expect = 0.000e+0
Identity = 943/943 (100.00%), Postives = 943/943 (100.00%), Query Frame = 0 
Query:    1 MSLLPSVATVVGRLPAPVLAHVMSWLPGECVVNFSTSCQATVPYLHCVPALIVSNPRALPSLVRRLVKGDGIRHLRSLEKVPALTHLGLSQVTLPDPGAVLGLHALHSITSLALPSLAPSENLPPRLLPAPLAPVSVALGPLSAAGTGVASGASEAPFLPPPPPSLPSTPPPASPALSPPETLFYRALGEEVLVMTKLRELNFGCTTWDALVTAGFFEPPLVKPNSTATPAQQIRAAAAAAAAKAAAARAGKEGGTEGGNEGEEEGREDHPVAVRGWRLAEELRSVDFSGMKDMDDPHLVRLLAYIEENRYFGIKDLNLSLNPSPPSPFLPPPRLPGFLLDLTPLAAAFLRGVFRRLRVLDLSFQRGLSDVGLAHLAYAWLLGPHREGEGTVLEILKLRETSLGLAPLPGVAPFPPQDSTGLSTMSALLLPHPASSSLTGLRLLGRAMGAGRFEKLKVLDLRDNALGCKGVSALCVGLHREGSMPCLESLDLSMGGRKRELGAGQGDGGEGRQRGGMGPAGCTVLCAALLRQGGRGKVGQGGGGEGRVGGCRLRRLGLGGHLMGVEGVEVLLKVLRAGACPALRELDLTDNALGDEGACLVAEWLRGWERGREEWGGGAQDRPWEGKEGKEEQEDVQVTTPPPLRQLLLGHNGIAGALFAVHPLFHTPPCPGTSSLAALNLEGNLLASPLPAHAQGEDEGHHDLRPCLQAFLGPSLRHLSLAHNPFIGSTPASAAALGRLVREYPGIEHLNLTGCGLGRTREEESVGVMTGKKVAKVGFQLPVMLAEIQRPLALSSLLLRECGMHLSSLQSLCHASDVLRQLATVETDGQGGEECSAMFASLLASLTAGQLPGLKAVTFLCLDVDDDLAWRQSRVVERIERLRPWMKAYVSWPVGQAEMSNRTGRGGRGKSGERRLEEEKTRREGGRSEEWEGYDSGEYDGGA 943
            MSLLPSVATVVGRLPAPVLAHVMSWLPGECVVNFSTSCQATVPYLHCVPALIVSNPRALPSLVRRLVKGDGIRHLRSLEKVPALTHLGLSQVTLPDPGAVLGLHALHSITSLALPSLAPSENLPPRLLPAPLAPVSVALGPLSAAGTGVASGASEAPFLPPPPPSLPSTPPPASPALSPPETLFYRALGEEVLVMTKLRELNFGCTTWDALVTAGFFEPPLVKPNSTATPAQQIRAAAAAAAAKAAAARAGKEGGTEGGNEGEEEGREDHPVAVRGWRLAEELRSVDFSGMKDMDDPHLVRLLAYIEENRYFGIKDLNLSLNPSPPSPFLPPPRLPGFLLDLTPLAAAFLRGVFRRLRVLDLSFQRGLSDVGLAHLAYAWLLGPHREGEGTVLEILKLRETSLGLAPLPGVAPFPPQDSTGLSTMSALLLPHPASSSLTGLRLLGRAMGAGRFEKLKVLDLRDNALGCKGVSALCVGLHREGSMPCLESLDLSMGGRKRELGAGQGDGGEGRQRGGMGPAGCTVLCAALLRQGGRGKVGQGGGGEGRVGGCRLRRLGLGGHLMGVEGVEVLLKVLRAGACPALRELDLTDNALGDEGACLVAEWLRGWERGREEWGGGAQDRPWEGKEGKEEQEDVQVTTPPPLRQLLLGHNGIAGALFAVHPLFHTPPCPGTSSLAALNLEGNLLASPLPAHAQGEDEGHHDLRPCLQAFLGPSLRHLSLAHNPFIGSTPASAAALGRLVREYPGIEHLNLTGCGLGRTREEESVGVMTGKKVAKVGFQLPVMLAEIQRPLALSSLLLRECGMHLSSLQSLCHASDVLRQLATVETDGQGGEECSAMFASLLASLTAGQLPGLKAVTFLCLDVDDDLAWRQSRVVERIERLRPWMKAYVSWPVGQAEMSNRTGRGGRGKSGERRLEEEKTRREGGRSEEWEGYDSGEYDGGA
Sbjct:    1 MSLLPSVATVVGRLPAPVLAHVMSWLPGECVVNFSTSCQATVPYLHCVPALIVSNPRALPSLVRRLVKGDGIRHLRSLEKVPALTHLGLSQVTLPDPGAVLGLHALHSITSLALPSLAPSENLPPRLLPAPLAPVSVALGPLSAAGTGVASGASEAPFLPPPPPSLPSTPPPASPALSPPETLFYRALGEEVLVMTKLRELNFGCTTWDALVTAGFFEPPLVKPNSTATPAQQIRAAAAAAAAKAAAARAGKEGGTEGGNEGEEEGREDHPVAVRGWRLAEELRSVDFSGMKDMDDPHLVRLLAYIEENRYFGIKDLNLSLNPSPPSPFLPPPRLPGFLLDLTPLAAAFLRGVFRRLRVLDLSFQRGLSDVGLAHLAYAWLLGPHREGEGTVLEILKLRETSLGLAPLPGVAPFPPQDSTGLSTMSALLLPHPASSSLTGLRLLGRAMGAGRFEKLKVLDLRDNALGCKGVSALCVGLHREGSMPCLESLDLSMGGRKRELGAGQGDGGEGRQRGGMGPAGCTVLCAALLRQGGRGKVGQGGGGEGRVGGCRLRRLGLGGHLMGVEGVEVLLKVLRAGACPALRELDLTDNALGDEGACLVAEWLRGWERGREEWGGGAQDRPWEGKEGKEEQEDVQVTTPPPLRQLLLGHNGIAGALFAVHPLFHTPPCPGTSSLAALNLEGNLLASPLPAHAQGEDEGHHDLRPCLQAFLGPSLRHLSLAHNPFIGSTPASAAALGRLVREYPGIEHLNLTGCGLGRTREEESVGVMTGKKVAKVGFQLPVMLAEIQRPLALSSLLLRECGMHLSSLQSLCHASDVLRQLATVETDGQGGEECSAMFASLLASLTAGQLPGLKAVTFLCLDVDDDLAWRQSRVVERIERLRPWMKAYVSWPVGQAEMSNRTGRGGRGKSGERRLEEEKTRREGGRSEEWEGYDSGEYDGGA 943
The following BLAST results are available for this feature:
BLAST of EWM23095.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585103957|gb|EWM23095.1|0.000e+0100.00Leucine-rich repeat, ribonuclease inhibitor subtyp... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7595rna7595Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications