EWM23104.1, cds7570 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|585103969|gb|EWM23104.1| (oxidoreductase domain protein [Nannochloropsis gaditana]) HSP 1 Score: 332.413 bits (851), Expect = 1.872e-115 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query: 1 MAATLTAAARRSSASLTSLLLKRHASTLKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQRHPPVP 162
MAATLTAAARRSSASLTSLLLKRHASTLKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQRHPPVP
Sbjct: 1 MAATLTAAARRSSASLTSLLLKRHASTLKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQRHPPVP 162
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|298705193|emb|CBJ28624.1| (oxidoreductase, NAD-binding, myo-inositol 2-dehydrogenase [Ectocarpus siliculosus]) HSP 1 Score: 211.075 bits (536), Expect = 1.232e-64 Identity = 103/155 (66.45%), Postives = 123/155 (79.35%), Query Frame = 0
Query: 5 LTAAARR--SSASLTSLLLKRHASTLKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQR 157
+ ARR ++AS + +L VG+IGAGRIG+VHL+TLA VPGV+PVI+SDVVEPVLK VT +YGVP YTL+G EVIN PDV+AVWICSPSQFHADQIK AKAGKH+FCEKPIATDL GTIEA++VA + G+KLMTAFQR+ + R
Sbjct: 2 FSTVARRMGNTASRAGRGVASQTRSLNVGIIGAGRIGQVHLDTLASVPGVKPVIISDVVEPVLKVVTEKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIFCEKPIATDLAGTIEAVQVAKDCGVKLMTAFQRRFDPSFSR 156
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|219120773|ref|XP_002185618.1| (myo-inositol 2-dehydrogenase putative, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582467|gb|ACI65088.1| myo-inositol 2-dehydrogenase putative, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 157.147 bits (396), Expect = 7.169e-44 Identity = 75/130 (57.69%), Postives = 90/130 (69.23%), Query Frame = 0
Query: 28 LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQR 157
+KVGVIG GRIG VHLE + PGV PVI+S+ + QY +P +T D EVI P+V AVWICSPSQFHA+QIK CA GKHVFCEKPIATDL T+EAI +EAG+KLM QR+ + +R
Sbjct: 12 IKVGVIGMGRIGLVHLEAITKAPGVTPVIVSNPTVSKAEAAAKQYNIPRFTEDAMEVITDPEVDAVWICSPSQFHAEQIKACAANGKHVFCEKPIATDLPETVEAINACNEAGVKLMIGLQRRFDQNFKR 141
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|1072234495|gb|OEU19224.1| (myo-inositol 2-dehydrogenase putative [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 156.762 bits (395), Expect = 2.360e-43 Identity = 75/130 (57.69%), Postives = 89/130 (68.46%), Query Frame = 0
Query: 28 LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQR 157
+KVGV+G GRIG +HLE L PGV P+I S+ + ++ +P Y D D+VI HPDVQAVWICSPSQFH+DQI CAKAGKHVFCEKPIATDL TI AI D AG+KLM QR+ + R
Sbjct: 2 VKVGVVGCGRIGMLHLEALTKAPGVLPIICSNPHIDRARNAAEKFLIPAYCADADDVITHPDVQAVWICSPSQFHSDQIIACAKAGKHVFCEKPIATDLQQTILAIDACDAAGVKLMIGLQRRFDKNFGR 131
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|1072232974|gb|OEU17705.1| (myo-inositol 2-dehydrogenase putative [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 155.606 bits (392), Expect = 8.932e-43 Identity = 73/130 (56.15%), Postives = 90/130 (69.23%), Query Frame = 0
Query: 28 LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQR 157
+KVGVIG GRIG VHLE + PGV P+I+S+ + AQY +P ++ D +VI P+V AVWICSPSQFHADQIK CA KHVFCEKPIATDL T+EAI +EAG+KLM QR+ + +R
Sbjct: 12 VKVGVIGMGRIGLVHLEAITKAPGVVPIIVSNPTVSKAEAAAAQYNIPKFSDDAMDVITDPEVDAVWICSPSQFHADQIKACAANNKHVFCEKPIATDLAETVEAINACNEAGVKLMIGLQRRFDQNFER 141
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|298710337|emb|CBJ31955.1| (Myo-inositol dehydrogenase myo-inositol dehydrogenase [Ectocarpus siliculosus]) HSP 1 Score: 154.836 bits (390), Expect = 6.366e-42 Identity = 73/123 (59.35%), Postives = 87/123 (70.73%), Query Frame = 0
Query: 28 LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQ 150
+ VGVIGAGRIG VHLE L+ +P+I+S+ + A+Y V ++ D +VINHPDV AVWICSPSQFHADQIK CA GKHVFCEKPIATD+ TIEAI E +KLMTA QR+
Sbjct: 85 INVGVIGAGRIGLVHLEALSSCANAKPLIISNPTVSKAEAAAAKYNVAEFSSDAKDVINHPDVDAVWICSPSQFHADQIKACAAQGKHVFCEKPIATDVPETIEAINACKENNVKLMTALQRR 207
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|397614704|gb|EJK62964.1| (hypothetical protein THAOC_16407 [Thalassiosira oceanica]) HSP 1 Score: 154.066 bits (388), Expect = 7.965e-42 Identity = 72/123 (58.54%), Postives = 88/123 (71.54%), Query Frame = 0
Query: 28 LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQ 150
++VGVIG GRIG VHL + PGV P+++S+ + Q+GVP +T D EVI PDV AVWICSPSQ+HA+QIK CA GKHVFCEKPIATDL T+EAI +EAG+KLMT QR+
Sbjct: 45 VRVGVIGCGRIGIVHLGAINKAPGVVPIVVSNPTVSKAENAAKQFGVPKFTADAMEVITDPDVDAVWICSPSQYHAEQIKACAANGKHVFCEKPIATDLAETVEAINACNEAGVKLMTGLQRR 167
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|1210520516|dbj|GAX20674.1| (hypothetical protein FisN_32Hh063 [Fistulifera solaris]) HSP 1 Score: 153.295 bits (386), Expect = 1.278e-41 Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 0
Query: 10 RRSSASLTSLLLKRHAST---LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQR 157
R +S+S T + + T ++VGVIG GRIG VHLE + PGV+PVI+S+ + QY VP +T + +VI P V AVWICSPSQ+HA+QIK CA KHVFCEKPIAT+L+ T+EAI +EAG+KLM QR+ + +R
Sbjct: 21 RTASSSTTLFMTTKENDTKQDIRVGVIGMGRIGLVHLEAITKAPGVRPVIVSNPTVSKAEAAAKQYNVPRFTDNAMDVITDPQVDAVWICSPSQYHAEQIKACAANKKHVFCEKPIATELDETVEAINACNEAGVKLMIGLQRRFDQNFRR 171
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|223992685|ref|XP_002286026.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977341|gb|EED95667.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 150.599 bits (379), Expect = 7.984e-41 Identity = 71/123 (57.72%), Postives = 88/123 (71.54%), Query Frame = 0
Query: 28 LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQ 150
+KVGVIG GRIG VHL + PGV PV++S+ ++ ++GVP +T D +VI P+V AVWICSPSQ+HADQIK CA GKHVFCEKPIATDL T+EAI +EAG+KLM QR+
Sbjct: 11 VKVGVIGCGRIGIVHLGAINKAPGVVPVVVSNPTVSKAEDAAKRFGVPKFTSDAMDVITDPEVDAVWICSPSQYHADQIKACAANGKHVFCEKPIATDLAETVEAINACNEAGVKLMIGLQRR 133
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|223993855|ref|XP_002286611.1| (oxidoreductase [Thalassiosira pseudonana CCMP1335] >gi|220977926|gb|EED96252.1| oxidoreductase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 150.599 bits (379), Expect = 1.602e-40 Identity = 70/123 (56.91%), Postives = 88/123 (71.54%), Query Frame = 0
Query: 28 LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQ 150
+KVGVIG GRIG VHL + PGV P+++S+ ++ ++GVP +T D +VI P+V AVWICSPSQ+HADQIK CA GKHVFCEKPIATDL T+EAI +EAG+KLM QR+
Sbjct: 46 VKVGVIGCGRIGIVHLGAINKAPGVVPIVVSNPTVSKAEDAAKRFGVPKFTSDAMDVITDPEVDAVWICSPSQYHADQIKACAANGKHVFCEKPIATDLAETVEAINACNEAGVKLMIGLQRR 168 The following BLAST results are available for this feature:
BLAST of EWM23104.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|