EWM23104.1, cds7570 (CDS) Nannochloropsis gaditana

Overview
NameEWM23104.1
Unique Namecds7570
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:315204..315452 +
Alignment locationCM002472.1:315625..315777 +
Alignment locationCM002472.1:315937..315979 +
Alignment locationCM002472.1:316027..316070 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23104.1
Productoxidoreductase domain protein
Orig transcript idgnl|cribi|Naga_101197g1.5835.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:315204..315452 +
CM002472.1supercontigCM002472.1:315625..315777 +
CM002472.1supercontigCM002472.1:315937..315979 +
CM002472.1supercontigCM002472.1:316027..316070 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
IPR000683Oxidoreductase_N
Homology
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|585103969|gb|EWM23104.1| (oxidoreductase domain protein [Nannochloropsis gaditana])

HSP 1 Score: 332.413 bits (851), Expect = 1.872e-115
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:    1 MAATLTAAARRSSASLTSLLLKRHASTLKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQRHPPVP 162
            MAATLTAAARRSSASLTSLLLKRHASTLKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQRHPPVP
Sbjct:    1 MAATLTAAARRSSASLTSLLLKRHASTLKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQRHPPVP 162          
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|298705193|emb|CBJ28624.1| (oxidoreductase, NAD-binding, myo-inositol 2-dehydrogenase [Ectocarpus siliculosus])

HSP 1 Score: 211.075 bits (536), Expect = 1.232e-64
Identity = 103/155 (66.45%), Postives = 123/155 (79.35%), Query Frame = 0
Query:    5 LTAAARR--SSASLTSLLLKRHASTLKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQR 157
             +  ARR  ++AS     +     +L VG+IGAGRIG+VHL+TLA VPGV+PVI+SDVVEPVLK VT +YGVP YTL+G EVIN PDV+AVWICSPSQFHADQIK  AKAGKH+FCEKPIATDL GTIEA++VA + G+KLMTAFQR+   +  R
Sbjct:    2 FSTVARRMGNTASRAGRGVASQTRSLNVGIIGAGRIGQVHLDTLASVPGVKPVIISDVVEPVLKVVTEKYGVPKYTLEGMEVINDPDVEAVWICSPSQFHADQIKASAKAGKHIFCEKPIATDLAGTIEAVQVAKDCGVKLMTAFQRRFDPSFSR 156          
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|219120773|ref|XP_002185618.1| (myo-inositol 2-dehydrogenase putative, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582467|gb|ACI65088.1| myo-inositol 2-dehydrogenase putative, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 157.147 bits (396), Expect = 7.169e-44
Identity = 75/130 (57.69%), Postives = 90/130 (69.23%), Query Frame = 0
Query:   28 LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQR 157
            +KVGVIG GRIG VHLE +   PGV PVI+S+      +    QY +P +T D  EVI  P+V AVWICSPSQFHA+QIK CA  GKHVFCEKPIATDL  T+EAI   +EAG+KLM   QR+  +  +R
Sbjct:   12 IKVGVIGMGRIGLVHLEAITKAPGVTPVIVSNPTVSKAEAAAKQYNIPRFTEDAMEVITDPEVDAVWICSPSQFHAEQIKACAANGKHVFCEKPIATDLPETVEAINACNEAGVKLMIGLQRRFDQNFKR 141          
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|1072234495|gb|OEU19224.1| (myo-inositol 2-dehydrogenase putative [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 156.762 bits (395), Expect = 2.360e-43
Identity = 75/130 (57.69%), Postives = 89/130 (68.46%), Query Frame = 0
Query:   28 LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQR 157
            +KVGV+G GRIG +HLE L   PGV P+I S+      +    ++ +P Y  D D+VI HPDVQAVWICSPSQFH+DQI  CAKAGKHVFCEKPIATDL  TI AI   D AG+KLM   QR+  +   R
Sbjct:    2 VKVGVVGCGRIGMLHLEALTKAPGVLPIICSNPHIDRARNAAEKFLIPAYCADADDVITHPDVQAVWICSPSQFHSDQIIACAKAGKHVFCEKPIATDLQQTILAIDACDAAGVKLMIGLQRRFDKNFGR 131          
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|1072232974|gb|OEU17705.1| (myo-inositol 2-dehydrogenase putative [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 155.606 bits (392), Expect = 8.932e-43
Identity = 73/130 (56.15%), Postives = 90/130 (69.23%), Query Frame = 0
Query:   28 LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQR 157
            +KVGVIG GRIG VHLE +   PGV P+I+S+      +   AQY +P ++ D  +VI  P+V AVWICSPSQFHADQIK CA   KHVFCEKPIATDL  T+EAI   +EAG+KLM   QR+  +  +R
Sbjct:   12 VKVGVIGMGRIGLVHLEAITKAPGVVPIIVSNPTVSKAEAAAAQYNIPKFSDDAMDVITDPEVDAVWICSPSQFHADQIKACAANNKHVFCEKPIATDLAETVEAINACNEAGVKLMIGLQRRFDQNFER 141          
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|298710337|emb|CBJ31955.1| (Myo-inositol dehydrogenase myo-inositol dehydrogenase [Ectocarpus siliculosus])

HSP 1 Score: 154.836 bits (390), Expect = 6.366e-42
Identity = 73/123 (59.35%), Postives = 87/123 (70.73%), Query Frame = 0
Query:   28 LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQ 150
            + VGVIGAGRIG VHLE L+     +P+I+S+      +   A+Y V  ++ D  +VINHPDV AVWICSPSQFHADQIK CA  GKHVFCEKPIATD+  TIEAI    E  +KLMTA QR+
Sbjct:   85 INVGVIGAGRIGLVHLEALSSCANAKPLIISNPTVSKAEAAAAKYNVAEFSSDAKDVINHPDVDAVWICSPSQFHADQIKACAAQGKHVFCEKPIATDVPETIEAINACKENNVKLMTALQRR 207          
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|397614704|gb|EJK62964.1| (hypothetical protein THAOC_16407 [Thalassiosira oceanica])

HSP 1 Score: 154.066 bits (388), Expect = 7.965e-42
Identity = 72/123 (58.54%), Postives = 88/123 (71.54%), Query Frame = 0
Query:   28 LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQ 150
            ++VGVIG GRIG VHL  +   PGV P+++S+      +    Q+GVP +T D  EVI  PDV AVWICSPSQ+HA+QIK CA  GKHVFCEKPIATDL  T+EAI   +EAG+KLMT  QR+
Sbjct:   45 VRVGVIGCGRIGIVHLGAINKAPGVVPIVVSNPTVSKAENAAKQFGVPKFTADAMEVITDPDVDAVWICSPSQYHAEQIKACAANGKHVFCEKPIATDLAETVEAINACNEAGVKLMTGLQRR 167          
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|1210520516|dbj|GAX20674.1| (hypothetical protein FisN_32Hh063 [Fistulifera solaris])

HSP 1 Score: 153.295 bits (386), Expect = 1.278e-41
Identity = 75/151 (49.67%), Postives = 99/151 (65.56%), Query Frame = 0
Query:   10 RRSSASLTSLLLKRHAST---LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQRGRAHQR 157
            R +S+S T  +  +   T   ++VGVIG GRIG VHLE +   PGV+PVI+S+      +    QY VP +T +  +VI  P V AVWICSPSQ+HA+QIK CA   KHVFCEKPIAT+L+ T+EAI   +EAG+KLM   QR+  +  +R
Sbjct:   21 RTASSSTTLFMTTKENDTKQDIRVGVIGMGRIGLVHLEAITKAPGVRPVIVSNPTVSKAEAAAKQYNVPRFTDNAMDVITDPQVDAVWICSPSQYHAEQIKACAANKKHVFCEKPIATELDETVEAINACNEAGVKLMIGLQRRFDQNFRR 171          
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|223992685|ref|XP_002286026.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977341|gb|EED95667.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 150.599 bits (379), Expect = 7.984e-41
Identity = 71/123 (57.72%), Postives = 88/123 (71.54%), Query Frame = 0
Query:   28 LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQ 150
            +KVGVIG GRIG VHL  +   PGV PV++S+      ++   ++GVP +T D  +VI  P+V AVWICSPSQ+HADQIK CA  GKHVFCEKPIATDL  T+EAI   +EAG+KLM   QR+
Sbjct:   11 VKVGVIGCGRIGIVHLGAINKAPGVVPVVVSNPTVSKAEDAAKRFGVPKFTSDAMDVITDPEVDAVWICSPSQYHADQIKACAANGKHVFCEKPIATDLAETVEAINACNEAGVKLMIGLQRR 133          
BLAST of EWM23104.1 vs. NCBI_GenBank
Match: gi|223993855|ref|XP_002286611.1| (oxidoreductase [Thalassiosira pseudonana CCMP1335] >gi|220977926|gb|EED96252.1| oxidoreductase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 150.599 bits (379), Expect = 1.602e-40
Identity = 70/123 (56.91%), Postives = 88/123 (71.54%), Query Frame = 0
Query:   28 LKVGVIGAGRIGRVHLETLAGVPGVQPVILSDVVEPVLKEVTAQYGVPNYTLDGDEVINHPDVQAVWICSPSQFHADQIKKCAKAGKHVFCEKPIATDLNGTIEAIKVADEAGIKLMTAFQRQ 150
            +KVGVIG GRIG VHL  +   PGV P+++S+      ++   ++GVP +T D  +VI  P+V AVWICSPSQ+HADQIK CA  GKHVFCEKPIATDL  T+EAI   +EAG+KLM   QR+
Sbjct:   46 VKVGVIGCGRIGIVHLGAINKAPGVVPIVVSNPTVSKAEDAAKRFGVPKFTSDAMDVITDPEVDAVWICSPSQYHADQIKACAANGKHVFCEKPIATDLAETVEAINACNEAGVKLMIGLQRR 168          
The following BLAST results are available for this feature:
BLAST of EWM23104.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103969|gb|EWM23104.1|1.872e-115100.00oxidoreductase domain protein [Nannochloropsis gad... [more]
gi|298705193|emb|CBJ28624.1|1.232e-6466.45oxidoreductase, NAD-binding, myo-inositol 2-dehydr... [more]
gi|219120773|ref|XP_002185618.1|7.169e-4457.69myo-inositol 2-dehydrogenase putative, partial [Ph... [more]
gi|1072234495|gb|OEU19224.1|2.360e-4357.69myo-inositol 2-dehydrogenase putative [Fragilariop... [more]
gi|1072232974|gb|OEU17705.1|8.932e-4356.15myo-inositol 2-dehydrogenase putative [Fragilariop... [more]
gi|298710337|emb|CBJ31955.1|6.366e-4259.35Myo-inositol dehydrogenase myo-inositol dehydrogen... [more]
gi|397614704|gb|EJK62964.1|7.965e-4258.54hypothetical protein THAOC_16407 [Thalassiosira oc... [more]
gi|1210520516|dbj|GAX20674.1|1.278e-4149.67hypothetical protein FisN_32Hh063 [Fistulifera sol... [more]
gi|223992685|ref|XP_002286026.1|7.984e-4157.72predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|223993855|ref|XP_002286611.1|1.602e-4056.91oxidoreductase [Thalassiosira pseudonana CCMP1335]... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7590rna7590Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications