EWM23109.1, cds7564 (CDS) Nannochloropsis gaditana

Overview
NameEWM23109.1
Unique Namecds7564
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:300467..300772 -
Alignment locationCM002472.1:299933..299974 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23109.1
Productsoluble pyridine nucleotide transhydrogenase
Orig transcript idgnl|cribi|Naga_102355g1.9242.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:300467..300772 -
CM002472.1supercontigCM002472.1:299933..299974 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0019725cellular homeostasis
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0050660flavin adenine dinucleotide binding
GO:0016491oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR001327Pyr_OxRdtase_NAD-bd_dom
Homology
[Close]
BLAST of EWM23109.1 vs. NCBI_GenBank
Match: gi|585103980|gb|EWM23109.1| (soluble pyridine nucleotide transhydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 231.106 bits (588), Expect = 7.529e-77
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 
Query:    1 MLSCLPPPTPLTRVYPSALSPSPSPRPQLLWGGIDRVPRSFIVVGAGVIGIEYASMINVLPGTNVTIIDPRPSLLGFADREVVDALMYSMRHYGARFVLGEKNALRPSLTGLWCT 115
            MLSCLPPPTPLTRVYPSALSPSPSPRPQLLWGGIDRVPRSFIVVGAGVIGIEYASMINVLPGTNVTIIDPRPSLLGFADREVVDALMYSMRHYGARFVLGEKNALRPSLTGLWCT
Sbjct:    1 MLSCLPPPTPLTRVYPSALSPSPSPRPQLLWGGIDRVPRSFIVVGAGVIGIEYASMINVLPGTNVTIIDPRPSLLGFADREVVDALMYSMRHYGARFVLGEKNALRPSLTGLWCT 115
[Close]
BLAST of EWM23109.1 vs. NCBI_GenBank
Match: gi|298706388|emb|CBJ29397.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 128.642 bits (322), Expect = 2.183e-32
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 0 
Query:   28 QLLWGGIDRVPRSFIVVGAGVIGIEYASMINVLPGTNVTIIDPRPSLLGFADREVVDALMYSMRHYGARFVLGEK 102
            QLLWGG+DRVPR  IVVGAGVIG+EYASMINV+PGT VT+IDPR  +LGFADREV  AL YSMR  GARF+LGEK
Sbjct:  224 QLLWGGVDRVPRDLIVVGAGVIGMEYASMINVIPGTTVTVIDPRDEVLGFADREVTQALCYSMRKNGARFLLGEK 298
[Close]
BLAST of EWM23109.1 vs. NCBI_GenBank
Match: gi|298705077|emb|CBJ28536.1| (hypothetical protein Esi_0108_0050 [Ectocarpus siliculosus])

HSP 1 Score: 115.931 bits (289), Expect = 5.459e-28
Identity = 55/98 (56.12%), Postives = 68/98 (69.39%), Query Frame = 0 
Query:    6 PPPTPL--TRVYPSALSPSPSPRPQLLWGGIDRVPRSFIVVGAGVIGIEYASMINVLPGTNVTIIDPRPSLLGFADREVVDALMYSMRHYGARFVLGE 101
            PP  P   T ++ S          QLLWGGI  +PR  IVVGAGVIG+EYA MINV+PGT VT+IDPRP++L FAD +V++ L Y+MR  GARF+L E
Sbjct:  157 PPDIPFDGTHIFDS---------DQLLWGGITHIPRDLIVVGAGVIGMEYACMINVVPGTTVTVIDPRPTVLSFADNDVIENLQYTMRQNGARFLLNE 245
[Close]
BLAST of EWM23109.1 vs. NCBI_GenBank
Match: gi|585113113|gb|EWM30450.1| (soluble pyridine nucleotide transhydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 105.531 bits (262), Expect = 4.023e-24
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 0 
Query:   29 LLWGGIDRVPRSFIVVGAGVIGIEYASMINVLPGTNVTIIDPRPSLLGFADREVVDALMYSMRHYGARFVLGEK 102
            LL G + RVPR  IVVGAGVIG+EYASM NV+PGT VT+ID RP +L FAD+E++ +L Y MR  GARF+LGE+
Sbjct:  260 LLSGSLQRVPRELIVVGAGVIGMEYASMFNVIPGTRVTVIDGRPDVLTFADKEIIQSLEYEMRQKGARFLLGEE 333
[Close]
BLAST of EWM23109.1 vs. NCBI_GenBank
Match: gi|673034636|ref|XP_008871279.1| (hypothetical protein, variant 2 [Aphanomyces invadans] >gi|574473250|gb|ETW00254.1| hypothetical protein, variant 2 [Aphanomyces invadans])

HSP 1 Score: 104.375 bits (259), Expect = 6.073e-24
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 0 
Query:   28 QLLWGGIDRVPRSFIVVGAGVIGIEYASMINVLPGTNVTIIDPRPSLLGFADREVVDALMYSMRHYGARFVLGE 101
            QLLWGG+D VP+  IVVGAGVIG+EYASMI+++PGT VT+ID R  +L  AD+EV DAL Y MR  G+RF+  E
Sbjct:  224 QLLWGGVDIVPKRLIVVGAGVIGMEYASMISIIPGTQVTVIDGRKEILDMADKEVSDALCYYMRQRGSRFLTEE 297
[Close]
BLAST of EWM23109.1 vs. NCBI_GenBank
Match: gi|673034632|ref|XP_008871277.1| (hypothetical protein H310_07641 [Aphanomyces invadans] >gi|574473248|gb|ETW00252.1| hypothetical protein H310_07641 [Aphanomyces invadans])

HSP 1 Score: 104.375 bits (259), Expect = 7.541e-24
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 0 
Query:   28 QLLWGGIDRVPRSFIVVGAGVIGIEYASMINVLPGTNVTIIDPRPSLLGFADREVVDALMYSMRHYGARFVLGE 101
            QLLWGG+D VP+  IVVGAGVIG+EYASMI+++PGT VT+ID R  +L  AD+EV DAL Y MR  G+RF+  E
Sbjct:  224 QLLWGGVDIVPKRLIVVGAGVIGMEYASMISIIPGTQVTVIDGRKEILDMADKEVSDALCYYMRQRGSRFLTEE 297
[Close]
BLAST of EWM23109.1 vs. NCBI_GenBank
Match: gi|673034634|ref|XP_008871278.1| (hypothetical protein, variant 1 [Aphanomyces invadans] >gi|574473249|gb|ETW00253.1| hypothetical protein, variant 1 [Aphanomyces invadans])

HSP 1 Score: 104.375 bits (259), Expect = 8.740e-24
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 0 
Query:   28 QLLWGGIDRVPRSFIVVGAGVIGIEYASMINVLPGTNVTIIDPRPSLLGFADREVVDALMYSMRHYGARFVLGE 101
            QLLWGG+D VP+  IVVGAGVIG+EYASMI+++PGT VT+ID R  +L  AD+EV DAL Y MR  G+RF+  E
Sbjct:  224 QLLWGGVDIVPKRLIVVGAGVIGMEYASMISIIPGTQVTVIDGRKEILDMADKEVSDALCYYMRQRGSRFLTEE 297
[Close]
BLAST of EWM23109.1 vs. NCBI_GenBank
Match: gi|698796504|ref|XP_009831281.1| (hypothetical protein, variant 3 [Aphanomyces astaci] >gi|698796508|ref|XP_009831283.1| hypothetical protein, variant 2 [Aphanomyces astaci] >gi|574113952|gb|ETV79441.1| hypothetical protein, variant 2 [Aphanomyces astaci] >gi|574113953|gb|ETV79442.1| hypothetical protein, variant 3 [Aphanomyces astaci])

HSP 1 Score: 103.219 bits (256), Expect = 1.587e-23
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 0 
Query:   28 QLLWGGIDRVPRSFIVVGAGVIGIEYASMINVLPGTNVTIIDPRPSLLGFADREVVDALMYSMRHYGARFVLGE 101
            QLLWGG+D VP+  IVVGAGVIG+EYASMI+++PGT VT+ID R  +L  AD+EV DAL Y MR  G+RF+  E
Sbjct:  222 QLLWGGVDIVPKRLIVVGAGVIGMEYASMISIIPGTQVTVIDGRKEILDMADKEVSDALCYYMRKRGSRFLTEE 295
[Close]
BLAST of EWM23109.1 vs. NCBI_GenBank
Match: gi|698796506|ref|XP_009831282.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574113951|gb|ETV79440.1| hypothetical protein, variant 1 [Aphanomyces astaci])

HSP 1 Score: 102.834 bits (255), Expect = 2.790e-23
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 0 
Query:   28 QLLWGGIDRVPRSFIVVGAGVIGIEYASMINVLPGTNVTIIDPRPSLLGFADREVVDALMYSMRHYGARFVLGE 101
            QLLWGG+D VP+  IVVGAGVIG+EYASMI+++PGT VT+ID R  +L  AD+EV DAL Y MR  G+RF+  E
Sbjct:  222 QLLWGGVDIVPKRLIVVGAGVIGMEYASMISIIPGTQVTVIDGRKEILDMADKEVSDALCYYMRKRGSRFLTEE 295
[Close]
BLAST of EWM23109.1 vs. NCBI_GenBank
Match: gi|1173956022|gb|OQS02908.1| (hypothetical protein THRCLA_04779 [Thraustotheca clavata])

HSP 1 Score: 102.449 bits (254), Expect = 4.674e-23
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 0 
Query:   28 QLLWGGIDRVPRSFIVVGAGVIGIEYASMINVLPGTNVTIIDPRPSLLGFADREVVDALMYSMRHYGARFVLGEKN 103
            QLLWGG+  VP+  IVVGAGVIG+EYA+MI+++PGT VT+ID R  +L  AD+EV DAL YSMR  G RF L E+N
Sbjct:  232 QLLWGGLKTVPKRLIVVGAGVIGMEYAAMISIIPGTQVTVIDGRKEILEMADKEVSDALCYSMRQRGTRF-LTEEN 306
The following BLAST results are available for this feature:
BLAST of EWM23109.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103980|gb|EWM23109.1|7.529e-77100.00soluble pyridine nucleotide transhydrogenase [Nann... [more]
gi|298706388|emb|CBJ29397.1|2.183e-3278.67conserved unknown protein [Ectocarpus siliculosus][more]
gi|298705077|emb|CBJ28536.1|5.459e-2856.12hypothetical protein Esi_0108_0050 [Ectocarpus sil... [more]
gi|585113113|gb|EWM30450.1|4.023e-2464.86soluble pyridine nucleotide transhydrogenase [Nann... [more]
gi|673034636|ref|XP_008871279.1|6.073e-2463.51hypothetical protein, variant 2 [Aphanomyces invad... [more]
gi|673034632|ref|XP_008871277.1|7.541e-2463.51hypothetical protein H310_07641 [Aphanomyces invad... [more]
gi|673034634|ref|XP_008871278.1|8.740e-2463.51hypothetical protein, variant 1 [Aphanomyces invad... [more]
gi|698796504|ref|XP_009831281.1|1.587e-2363.51hypothetical protein, variant 3 [Aphanomyces astac... [more]
gi|698796506|ref|XP_009831282.1|2.790e-2363.51hypothetical protein, variant 1 [Aphanomyces astac... [more]
gi|1173956022|gb|OQS02908.1|4.674e-2363.16hypothetical protein THRCLA_04779 [Thraustotheca c... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7584rna7584Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications