EWM23121.1, cds7553 (CDS) Nannochloropsis gaditana

Overview
NameEWM23121.1
Unique Namecds7553
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:274263..274337 +
Alignment locationCM002472.1:274655..274800 +
Alignment locationCM002472.1:274966..275105 +
Alignment locationCM002472.1:275234..275442 +
Alignment locationCM002472.1:276036..276111 +
Alignment locationCM002472.1:276841..277118 +
Alignment locationCM002472.1:277357..277715 +
Alignment locationCM002472.1:277974..278150 +
Alignment locationCM002472.1:278265..278778 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23121.1
Productfyve and coiled-coil domain-containing protein 1
Orig transcript idgnl|cribi|Naga_100582g1.3772.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:274263..274337 +
CM002472.1supercontigCM002472.1:274655..274800 +
CM002472.1supercontigCM002472.1:274966..275105 +
CM002472.1supercontigCM002472.1:275234..275442 +
CM002472.1supercontigCM002472.1:276036..276111 +
CM002472.1supercontigCM002472.1:276841..277118 +
CM002472.1supercontigCM002472.1:277357..277715 +
CM002472.1supercontigCM002472.1:277974..278150 +
CM002472.1supercontigCM002472.1:278265..278778 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD
IPR029021Prot-tyrosine_phosphatase-like
Homology
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|585103997|gb|EWM23121.1| (fyve and coiled-coil domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 1350.5 bits (3494), Expect = 0.000e+0
Identity = 657/657 (100.00%), Postives = 657/657 (100.00%), Query Frame = 0
Query:    1 MVEGGRHAIGRQDPWIMSKSQGPDKVIDFKAFGDKPARGRATALYIGNKNDARNEAGLHERGITHILNCTPPRSLDPESGCPNFFEASHRGWVYKRIPIFDNRGEDILSFMPGAVAFIEQGTLQQGRKPLRILRPRLLDARGGALIDRCPGSLACQAESLRPQRIFLGATAAMGGTGGGETKGEGGERGSPIASRQISNARNHSCEHCKYCGIVRYQLRRYQQHPRTTTMFLFGGHEDASSKVTQPSARQHLERPPRRSDQDPVHQQEEQQAEQRQRAEDRAAEEEKETHNRALLLMSAKQRGFLSYEEHEYRKHLAELDAALTAAVPQAGLPCHTHDLAWKSSGTPVRYFFKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVLLHLTGYFRRSDQVHALNKVFLQLFIQSRPGYLRPPSLSVSASSSSSTTPSSSSSPPSSIPPPIPPKSAAVIRQEEMDEAALSSDRSGSLRPQPNSLPPPHPPKNGQKGPAGNR 657
            MVEGGRHAIGRQDPWIMSKSQGPDKVIDFKAFGDKPARGRATALYIGNKNDARNEAGLHERGITHILNCTPPRSLDPESGCPNFFEASHRGWVYKRIPIFDNRGEDILSFMPGAVAFIEQGTLQQGRKPLRILRPRLLDARGGALIDRCPGSLACQAESLRPQRIFLGATAAMGGTGGGETKGEGGERGSPIASRQISNARNHSCEHCKYCGIVRYQLRRYQQHPRTTTMFLFGGHEDASSKVTQPSARQHLERPPRRSDQDPVHQQEEQQAEQRQRAEDRAAEEEKETHNRALLLMSAKQRGFLSYEEHEYRKHLAELDAALTAAVPQAGLPCHTHDLAWKSSGTPVRYFFKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVLLHLTGYFRRSDQVHALNKVFLQLFIQSRPGYLRPPSLSVSASSSSSTTPSSSSSPPSSIPPPIPPKSAAVIRQEEMDEAALSSDRSGSLRPQPNSLPPPHPPKNGQKGPAGNR
Sbjct:    1 MVEGGRHAIGRQDPWIMSKSQGPDKVIDFKAFGDKPARGRATALYIGNKNDARNEAGLHERGITHILNCTPPRSLDPESGCPNFFEASHRGWVYKRIPIFDNRGEDILSFMPGAVAFIEQGTLQQGRKPLRILRPRLLDARGGALIDRCPGSLACQAESLRPQRIFLGATAAMGGTGGGETKGEGGERGSPIASRQISNARNHSCEHCKYCGIVRYQLRRYQQHPRTTTMFLFGGHEDASSKVTQPSARQHLERPPRRSDQDPVHQQEEQQAEQRQRAEDRAAEEEKETHNRALLLMSAKQRGFLSYEEHEYRKHLAELDAALTAAVPQAGLPCHTHDLAWKSSGTPVRYFFKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVLLHLTGYFRRSDQVHALNKVFLQLFIQSRPGYLRPPSLSVSASSSSSTTPSSSSSPPSSIPPPIPPKSAAVIRQEEMDEAALSSDRSGSLRPQPNSLPPPHPPKNGQKGPAGNR 657          
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|299470817|emb|CBN78640.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 100.908 bits (250), Expect = 6.397e-20
Identity = 71/243 (29.22%), Postives = 115/243 (47.33%), Query Frame = 0
Query:  339 LAWKSSGTPVRYFFKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAE---------------EGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVLLHLTGYFRRSDQVHALNKVFLQ 566
            + WKSS TP+   F+LP+PV+ +GS + Y F +   D+ FA+ F+ A+               E  + E ++   +V+S + P++G I + RPG + L+WDN +SWF  K LSYSV L  P+  A E  +  RA   + A     + A  +      E++     V RLEEEL  + A+L         L  +    Q+      + +  L  R +P  +L+    Y    D+   + K +L+
Sbjct:   29 ITWKSSTTPIATEFRLPIPVEHSGSVIDYSFETLHNDVQFAILFEEADDSKGGGAFSGDGGIAEDGQEEVIVEPQKVESQLGPITGTIPLTRPGRLTLVWDNGHSWFKHKILSYSVTLHVPSLLATEKAKCGRAVNALRACVRSRDDAHSRGAEAVLERKEAASTVERLEEELREMQAKLDGATRLAEQLGREVDDCQQREYLEGRKIQGLTFRLMPEEILIRTLSYGSEEDEWLTVCKDWLE 271          
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|223996505|ref|XP_002287926.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977042|gb|EED95369.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 100.138 bits (248), Expect = 1.128e-19
Identity = 72/214 (33.64%), Postives = 108/214 (50.47%), Query Frame = 0
Query:  329 QAGLPCHTHDL-----AWKSSGTPV--RYFFKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITV-HRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRAR---QVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHL 531
            Q   P  T D       +K+   PV  R  F +P+ V   GS V Y  ++D +DIGF V  +  EEG     V  S+RVDSHVEPV+G   V   P  ++  +DN YSWF  K +SY + +  P        R +RA+   +VV+   HDME    +  V+ ++K+      T LEE +A+L A L+EK+  L  + ++   L++    R + +
Sbjct:   71 QVDGPSLTSDFIGNPSVYKAKAVPVALRTKFDVPIHVTAGGSVVEYEISTDLYDIGFGVTAE-REEGTT--NVKDSARVDSHVEPVTGKFLVGSVPCALIFSFDNEYSWFREKKVSYKITVTPPKTENVIKGRRLRAKKALEVVSKDRHDME----ERYVIASQKQ------TELEECIAKLEAELTEKKKSLDVVLKEVGWLEKKTVVREEQI 271          
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|673023868|ref|XP_008865895.1| (hypothetical protein H310_03710 [Aphanomyces invadans] >gi|574479123|gb|ETW06118.1| hypothetical protein H310_03710 [Aphanomyces invadans])

HSP 1 Score: 90.5077 bits (223), Expect = 5.131e-17
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 0
Query:   20 SQGPDKVIDFKAFGDKPARGRATALYIGNKNDARNEAGLHERGITHILNCTPPRSLDPESGCPNFFEASHRGWVYKRIPIFDNRGEDILSFMPGAVAFIEQGTL 123
            + GP KV+D+              +++G +  A+N   L   GITHILN TP R +DP +G PNFFE  +  + Y+R  +FDN+GEDIL+ + G +AFI+Q   
Sbjct:    3 ADGPTKVMDY--------------VFLGGRQQAKNRELLESLGITHILNVTPTRKVDPVAGVPNFFEKDN-AFTYRRCALFDNQGEDILTSLDGCIAFIDQAKF 91          
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|301103330|ref|XP_002900751.1| (F-box protein, putative [Phytophthora infestans T30-4] >gi|262101506|gb|EEY59558.1| F-box protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 92.4337 bits (228), Expect = 8.828e-17
Identity = 70/234 (29.91%), Postives = 112/234 (47.86%), Query Frame = 0
Query:  333 PCHTHDLAWKSSGTPVRYF--FKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVV--QAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVL----LH-LTGYFRRSDQV 557
            P    +L WKSS  P+     F+LP+ +D     + Y F++ ++D+ F V    A+ G+ +E +L + R +S  + V G +++  PG V+LLWDNS+SW  TK L+Y V L+  T P +E E+   A +        +    G++  +  Q + EA T E  R + E  +L  R  E+  E+    +D       +   H   L   L+AL  R L    LH +  Y    D +
Sbjct:   68 PPIVDELQWKSSQVPIAASGGFQLPIKLDARKGELHYSFSTRDYDVNFGVQMICAD-GSLIE-LLDTRRYESQKQQVEGQLSLTGPGMVLLLWDNSFSWVNTKQLAYHVELKQETLPVSEAEKTQLALKARLEREQKLLQVEGEYDGLETQVQTEAQTIEFLRHQIEELQLQLRQHEEEREVINKKKD-------QVGEHIEELCWELQALSWRCLDQAALHRILDYLEEKDLI 292          
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|675174101|ref|XP_008895935.1| (hypothetical protein PPTG_03901 [Phytophthora parasitica INRA-310] >gi|568103580|gb|ETN18237.1| hypothetical protein PPTG_03901 [Phytophthora parasitica INRA-310] >gi|570971280|gb|ETP34399.1| hypothetical protein F442_17319 [Phytophthora parasitica P10297])

HSP 1 Score: 91.2781 bits (225), Expect = 2.407e-16
Identity = 59/222 (26.58%), Postives = 107/222 (48.20%), Query Frame = 0
Query:  338 DLAWKSSGTPVRYF--FKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVLLHLTGYFRRSDQV 557
            +L WKSS  P+     F+LP+ +D     + Y F++ ++D+ F V    A+ G+ +E +L + R +S  + V G +++  PG V+LLWDNS+SW  TK L+Y V L+  T P ++ E+   A +        +  + G++  ++ + +     +  L  ++  L  +L +   E  T+++    + E        L  L  R L    L  + GY    D +
Sbjct:   72 ELQWKSSQVPIAASGGFQLPIKLDARKGELHYSFSTRDYDVNFGVQMICAD-GSLIE-LLDTRRYESQKQKVEGQLSLTGPGMVLLLWDNSFSWVNTKQLAYHVELKQETLPVSDAEKTQLALKARLEREQKLLQSEGEYDRLETQMQTEAQTIDFLRHQIEELQLQLRQHEEERETINKKKEQVGEHIEELCWELQALSWRCLDQAALHRILGYLGEKDLI 291          
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|566013542|gb|ETI36453.1| (hypothetical protein F443_17468 [Phytophthora parasitica P1569])

HSP 1 Score: 90.8929 bits (224), Expect = 2.855e-16
Identity = 59/222 (26.58%), Postives = 107/222 (48.20%), Query Frame = 0
Query:  338 DLAWKSSGTPVRYF--FKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVLLHLTGYFRRSDQV 557
            +L WKSS  P+     F+LP+ +D     + Y F++ ++D+ F V    A+ G+ +E +L + R +S  + V G +++  PG V+LLWDNS+SW  TK L+Y V L+  T P ++ E+   A +        +  + G++  ++ + +     +  L  ++  L  +L +   E  T+++    + E        L  L  R L    L  + GY    D +
Sbjct:   72 ELQWKSSQVPIAASGGFQLPIKLDARKGELHYSFSTRDYDVNFGVQMICAD-GSLIE-LLDTRRYESQKQKVEGQLSLTGPGMVLLLWDNSFSWVNTKQLAYHVELKQETLPVSDAEKTQLALKARLEREQKLLQSEGEYDRLETQMQTEAQTIDFLRHQIEELQLQLRQHEEERETINKKKEQVGEHIEELCWELQALSWRCLDQAALHRILGYLGEKDLI 291          
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|675174103|ref|XP_008895936.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566013543|gb|ETI36454.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|568103581|gb|ETN18238.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570971281|gb|ETP34400.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970635263|gb|KUF80216.1| hypothetical protein AM587_10011853 [Phytophthora nicotianae])

HSP 1 Score: 89.7373 bits (221), Expect = 3.340e-16
Identity = 57/184 (30.98%), Postives = 96/184 (52.17%), Query Frame = 0
Query:  333 PCHTHDLAWKSSGTPVRYF--FKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLH 514
            P    +L WKSS  P+     F+LP+ +D     + Y F++ ++D+ F V    A+ G+ +E +L + R +S  + V G +++  PG V+LLWDNS+SW  TK L+Y V L+  T P ++ E+     Q+   A  + E      +++Q+E     GE  RLE ++      +   RH++  L 
Sbjct:   67 PPIVDELQWKSSQVPIAASGGFQLPIKLDARKGELHYSFSTRDYDVNFGVQMICAD-GSLIE-LLDTRRYESQKQKVEGQLSLTGPGMVLLLWDNSFSWVNTKQLAYHVELKQETLPVSDAEKT----QLALKARLERE-----QKLLQSE-----GEYDRLETQMQTEAQTIDFLRHQIEELQ 234          
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|567979615|gb|ETL30091.1| (hypothetical protein L916_16893, partial [Phytophthora parasitica] >gi|568009116|gb|ETL83328.1| hypothetical protein L917_16722, partial [Phytophthora parasitica] >gi|568039032|gb|ETM36545.1| hypothetical protein L914_16805, partial [Phytophthora parasitica])

HSP 1 Score: 90.8929 bits (224), Expect = 3.378e-16
Identity = 59/222 (26.58%), Postives = 107/222 (48.20%), Query Frame = 0
Query:  338 DLAWKSSGTPVRYF--FKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVLLHLTGYFRRSDQV 557
            +L WKSS  P+     F+LP+ +D     + Y F++ ++D+ F V    A+ G+ +E +L + R +S  + V G +++  PG V+LLWDNS+SW  TK L+Y V L+  T P ++ E+   A +        +  + G++  ++ + +     +  L  ++  L  +L +   E  T+++    + E        L  L  R L    L  + GY    D +
Sbjct:   80 ELQWKSSQVPIAASGGFQLPIKLDARKGELHYSFSTRDYDVNFGVQMICAD-GSLIE-LLDTRRYESQKQKVEGQLSLTGPGMVLLLWDNSFSWVNTKQLAYHVELKQETLPVSDAEKTQLALKARLEREQKLLQSEGEYDRLETQMQTEAQTIDFLRHQIEELQLQLRQHEEERETINKKKEQVGEHIEELCWELQALSWRCLDQAALHRILGYLGEKDLI 299          
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|698784025|ref|XP_009825056.1| (hypothetical protein H257_02919 [Aphanomyces astaci] >gi|574119559|gb|ETV85038.1| hypothetical protein H257_02919 [Aphanomyces astaci])

HSP 1 Score: 88.1965 bits (217), Expect = 3.876e-16
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 0
Query:   44 LYIGNKNDARNEAGLHERGITHILNCTPPRSLDPESGCPNFFEASHRGWVYKRIPIFDNRGEDILSFMPGAVAFIEQGTL 123
            +++G++  A+N A L   GITHILN TP R +DP +G PNFFE  +  + Y+R  +FDN+GEDIL+ + G +AFI+Q   
Sbjct:   13 VFLGSRQHAKNRAMLESLGITHILNVTPTRKVDPVAGVPNFFEKDNV-FTYRRCALFDNQGEDILTSLDGCIAFIDQAKF 91          
The following BLAST results are available for this feature:
BLAST of EWM23121.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103997|gb|EWM23121.1|0.000e+0100.00fyve and coiled-coil domain-containing protein 1 [... [more]
gi|299470817|emb|CBN78640.1|6.397e-2029.22expressed unknown protein [Ectocarpus siliculosus][more]
gi|223996505|ref|XP_002287926.1|1.128e-1933.64predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|673023868|ref|XP_008865895.1|5.131e-1740.38hypothetical protein H310_03710 [Aphanomyces invad... [more]
gi|301103330|ref|XP_002900751.1|8.828e-1729.91F-box protein, putative [Phytophthora infestans T3... [more]
gi|675174101|ref|XP_008895935.1|2.407e-1626.58hypothetical protein PPTG_03901 [Phytophthora para... [more]
gi|566013542|gb|ETI36453.1|2.855e-1626.58hypothetical protein F443_17468 [Phytophthora para... [more]
gi|675174103|ref|XP_008895936.1|3.340e-1630.98hypothetical protein, variant [Phytophthora parasi... [more]
gi|567979615|gb|ETL30091.1|3.378e-1626.58hypothetical protein L916_16893, partial [Phytopht... [more]
gi|698784025|ref|XP_009825056.1|3.876e-1647.50hypothetical protein H257_02919 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7573rna7573Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications