EWM23121.1, cds7553 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|585103997|gb|EWM23121.1| (fyve and coiled-coil domain-containing protein 1 [Nannochloropsis gaditana]) HSP 1 Score: 1350.5 bits (3494), Expect = 0.000e+0 Identity = 657/657 (100.00%), Postives = 657/657 (100.00%), Query Frame = 0
Query: 1 MVEGGRHAIGRQDPWIMSKSQGPDKVIDFKAFGDKPARGRATALYIGNKNDARNEAGLHERGITHILNCTPPRSLDPESGCPNFFEASHRGWVYKRIPIFDNRGEDILSFMPGAVAFIEQGTLQQGRKPLRILRPRLLDARGGALIDRCPGSLACQAESLRPQRIFLGATAAMGGTGGGETKGEGGERGSPIASRQISNARNHSCEHCKYCGIVRYQLRRYQQHPRTTTMFLFGGHEDASSKVTQPSARQHLERPPRRSDQDPVHQQEEQQAEQRQRAEDRAAEEEKETHNRALLLMSAKQRGFLSYEEHEYRKHLAELDAALTAAVPQAGLPCHTHDLAWKSSGTPVRYFFKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVLLHLTGYFRRSDQVHALNKVFLQLFIQSRPGYLRPPSLSVSASSSSSTTPSSSSSPPSSIPPPIPPKSAAVIRQEEMDEAALSSDRSGSLRPQPNSLPPPHPPKNGQKGPAGNR 657
MVEGGRHAIGRQDPWIMSKSQGPDKVIDFKAFGDKPARGRATALYIGNKNDARNEAGLHERGITHILNCTPPRSLDPESGCPNFFEASHRGWVYKRIPIFDNRGEDILSFMPGAVAFIEQGTLQQGRKPLRILRPRLLDARGGALIDRCPGSLACQAESLRPQRIFLGATAAMGGTGGGETKGEGGERGSPIASRQISNARNHSCEHCKYCGIVRYQLRRYQQHPRTTTMFLFGGHEDASSKVTQPSARQHLERPPRRSDQDPVHQQEEQQAEQRQRAEDRAAEEEKETHNRALLLMSAKQRGFLSYEEHEYRKHLAELDAALTAAVPQAGLPCHTHDLAWKSSGTPVRYFFKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVLLHLTGYFRRSDQVHALNKVFLQLFIQSRPGYLRPPSLSVSASSSSSTTPSSSSSPPSSIPPPIPPKSAAVIRQEEMDEAALSSDRSGSLRPQPNSLPPPHPPKNGQKGPAGNR
Sbjct: 1 MVEGGRHAIGRQDPWIMSKSQGPDKVIDFKAFGDKPARGRATALYIGNKNDARNEAGLHERGITHILNCTPPRSLDPESGCPNFFEASHRGWVYKRIPIFDNRGEDILSFMPGAVAFIEQGTLQQGRKPLRILRPRLLDARGGALIDRCPGSLACQAESLRPQRIFLGATAAMGGTGGGETKGEGGERGSPIASRQISNARNHSCEHCKYCGIVRYQLRRYQQHPRTTTMFLFGGHEDASSKVTQPSARQHLERPPRRSDQDPVHQQEEQQAEQRQRAEDRAAEEEKETHNRALLLMSAKQRGFLSYEEHEYRKHLAELDAALTAAVPQAGLPCHTHDLAWKSSGTPVRYFFKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVLLHLTGYFRRSDQVHALNKVFLQLFIQSRPGYLRPPSLSVSASSSSSTTPSSSSSPPSSIPPPIPPKSAAVIRQEEMDEAALSSDRSGSLRPQPNSLPPPHPPKNGQKGPAGNR 657
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|299470817|emb|CBN78640.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 100.908 bits (250), Expect = 6.397e-20 Identity = 71/243 (29.22%), Postives = 115/243 (47.33%), Query Frame = 0
Query: 339 LAWKSSGTPVRYFFKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAE---------------EGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVLLHLTGYFRRSDQVHALNKVFLQ 566
+ WKSS TP+ F+LP+PV+ +GS + Y F + D+ FA+ F+ A+ E + E ++ +V+S + P++G I + RPG + L+WDN +SWF K LSYSV L P+ A E + RA + A + A + E++ V RLEEEL + A+L L + Q+ + + L R +P +L+ Y D+ + K +L+
Sbjct: 29 ITWKSSTTPIATEFRLPIPVEHSGSVIDYSFETLHNDVQFAILFEEADDSKGGGAFSGDGGIAEDGQEEVIVEPQKVESQLGPITGTIPLTRPGRLTLVWDNGHSWFKHKILSYSVTLHVPSLLATEKAKCGRAVNALRACVRSRDDAHSRGAEAVLERKEAASTVERLEEELREMQAKLDGATRLAEQLGREVDDCQQREYLEGRKIQGLTFRLMPEEILIRTLSYGSEEDEWLTVCKDWLE 271
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|223996505|ref|XP_002287926.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977042|gb|EED95369.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 100.138 bits (248), Expect = 1.128e-19 Identity = 72/214 (33.64%), Postives = 108/214 (50.47%), Query Frame = 0
Query: 329 QAGLPCHTHDL-----AWKSSGTPV--RYFFKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITV-HRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRAR---QVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHL 531
Q P T D +K+ PV R F +P+ V GS V Y ++D +DIGF V + EEG V S+RVDSHVEPV+G V P ++ +DN YSWF K +SY + + P R +RA+ +VV+ HDME + V+ ++K+ T LEE +A+L A L+EK+ L + ++ L++ R + +
Sbjct: 71 QVDGPSLTSDFIGNPSVYKAKAVPVALRTKFDVPIHVTAGGSVVEYEISTDLYDIGFGVTAE-REEGTT--NVKDSARVDSHVEPVTGKFLVGSVPCALIFSFDNEYSWFREKKVSYKITVTPPKTENVIKGRRLRAKKALEVVSKDRHDME----ERYVIASQKQ------TELEECIAKLEAELTEKKKSLDVVLKEVGWLEKKTVVREEQI 271
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|673023868|ref|XP_008865895.1| (hypothetical protein H310_03710 [Aphanomyces invadans] >gi|574479123|gb|ETW06118.1| hypothetical protein H310_03710 [Aphanomyces invadans]) HSP 1 Score: 90.5077 bits (223), Expect = 5.131e-17 Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 0
Query: 20 SQGPDKVIDFKAFGDKPARGRATALYIGNKNDARNEAGLHERGITHILNCTPPRSLDPESGCPNFFEASHRGWVYKRIPIFDNRGEDILSFMPGAVAFIEQGTL 123
+ GP KV+D+ +++G + A+N L GITHILN TP R +DP +G PNFFE + + Y+R +FDN+GEDIL+ + G +AFI+Q
Sbjct: 3 ADGPTKVMDY--------------VFLGGRQQAKNRELLESLGITHILNVTPTRKVDPVAGVPNFFEKDN-AFTYRRCALFDNQGEDILTSLDGCIAFIDQAKF 91
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|301103330|ref|XP_002900751.1| (F-box protein, putative [Phytophthora infestans T30-4] >gi|262101506|gb|EEY59558.1| F-box protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 92.4337 bits (228), Expect = 8.828e-17 Identity = 70/234 (29.91%), Postives = 112/234 (47.86%), Query Frame = 0
Query: 333 PCHTHDLAWKSSGTPVRYF--FKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVV--QAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVL----LH-LTGYFRRSDQV 557
P +L WKSS P+ F+LP+ +D + Y F++ ++D+ F V A+ G+ +E +L + R +S + V G +++ PG V+LLWDNS+SW TK L+Y V L+ T P +E E+ A + + G++ + Q + EA T E R + E +L R E+ E+ +D + H L L+AL R L LH + Y D +
Sbjct: 68 PPIVDELQWKSSQVPIAASGGFQLPIKLDARKGELHYSFSTRDYDVNFGVQMICAD-GSLIE-LLDTRRYESQKQQVEGQLSLTGPGMVLLLWDNSFSWVNTKQLAYHVELKQETLPVSEAEKTQLALKARLEREQKLLQVEGEYDGLETQVQTEAQTIEFLRHQIEELQLQLRQHEEEREVINKKKD-------QVGEHIEELCWELQALSWRCLDQAALHRILDYLEEKDLI 292
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|675174101|ref|XP_008895935.1| (hypothetical protein PPTG_03901 [Phytophthora parasitica INRA-310] >gi|568103580|gb|ETN18237.1| hypothetical protein PPTG_03901 [Phytophthora parasitica INRA-310] >gi|570971280|gb|ETP34399.1| hypothetical protein F442_17319 [Phytophthora parasitica P10297]) HSP 1 Score: 91.2781 bits (225), Expect = 2.407e-16 Identity = 59/222 (26.58%), Postives = 107/222 (48.20%), Query Frame = 0
Query: 338 DLAWKSSGTPVRYF--FKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVLLHLTGYFRRSDQV 557
+L WKSS P+ F+LP+ +D + Y F++ ++D+ F V A+ G+ +E +L + R +S + V G +++ PG V+LLWDNS+SW TK L+Y V L+ T P ++ E+ A + + + G++ ++ + + + L ++ L +L + E T+++ + E L L R L L + GY D +
Sbjct: 72 ELQWKSSQVPIAASGGFQLPIKLDARKGELHYSFSTRDYDVNFGVQMICAD-GSLIE-LLDTRRYESQKQKVEGQLSLTGPGMVLLLWDNSFSWVNTKQLAYHVELKQETLPVSDAEKTQLALKARLEREQKLLQSEGEYDRLETQMQTEAQTIDFLRHQIEELQLQLRQHEEERETINKKKEQVGEHIEELCWELQALSWRCLDQAALHRILGYLGEKDLI 291
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|566013542|gb|ETI36453.1| (hypothetical protein F443_17468 [Phytophthora parasitica P1569]) HSP 1 Score: 90.8929 bits (224), Expect = 2.855e-16 Identity = 59/222 (26.58%), Postives = 107/222 (48.20%), Query Frame = 0
Query: 338 DLAWKSSGTPVRYF--FKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVLLHLTGYFRRSDQV 557
+L WKSS P+ F+LP+ +D + Y F++ ++D+ F V A+ G+ +E +L + R +S + V G +++ PG V+LLWDNS+SW TK L+Y V L+ T P ++ E+ A + + + G++ ++ + + + L ++ L +L + E T+++ + E L L R L L + GY D +
Sbjct: 72 ELQWKSSQVPIAASGGFQLPIKLDARKGELHYSFSTRDYDVNFGVQMICAD-GSLIE-LLDTRRYESQKQKVEGQLSLTGPGMVLLLWDNSFSWVNTKQLAYHVELKQETLPVSDAEKTQLALKARLEREQKLLQSEGEYDRLETQMQTEAQTIDFLRHQIEELQLQLRQHEEERETINKKKEQVGEHIEELCWELQALSWRCLDQAALHRILGYLGEKDLI 291
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|675174103|ref|XP_008895936.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566013543|gb|ETI36454.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|568103581|gb|ETN18238.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570971281|gb|ETP34400.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970635263|gb|KUF80216.1| hypothetical protein AM587_10011853 [Phytophthora nicotianae]) HSP 1 Score: 89.7373 bits (221), Expect = 3.340e-16 Identity = 57/184 (30.98%), Postives = 96/184 (52.17%), Query Frame = 0
Query: 333 PCHTHDLAWKSSGTPVRYF--FKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLH 514
P +L WKSS P+ F+LP+ +D + Y F++ ++D+ F V A+ G+ +E +L + R +S + V G +++ PG V+LLWDNS+SW TK L+Y V L+ T P ++ E+ Q+ A + E +++Q+E GE RLE ++ + RH++ L
Sbjct: 67 PPIVDELQWKSSQVPIAASGGFQLPIKLDARKGELHYSFSTRDYDVNFGVQMICAD-GSLIE-LLDTRRYESQKQKVEGQLSLTGPGMVLLLWDNSFSWVNTKQLAYHVELKQETLPVSDAEKT----QLALKARLERE-----QKLLQSE-----GEYDRLETQMQTEAQTIDFLRHQIEELQ 234
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|567979615|gb|ETL30091.1| (hypothetical protein L916_16893, partial [Phytophthora parasitica] >gi|568009116|gb|ETL83328.1| hypothetical protein L917_16722, partial [Phytophthora parasitica] >gi|568039032|gb|ETM36545.1| hypothetical protein L914_16805, partial [Phytophthora parasitica]) HSP 1 Score: 90.8929 bits (224), Expect = 3.378e-16 Identity = 59/222 (26.58%), Postives = 107/222 (48.20%), Query Frame = 0
Query: 338 DLAWKSSGTPVRYF--FKLPVPVDTAGSHVAYRFASDEFDIGFAVFFQGAEEGAKLETVLPSSRVDSHVEPVSGDITVHRPGTVVLLWDNSYSWFATKALSYSVHLRYPTGPAAEMERGMRARQVVAAAYHDMELAAGKHRVVQAEKEALTGEVTRLEEELARLHARLSEKRHELATLHEDALLLQECRTSRHQHLLPLLLRALPARVLLHLTGYFRRSDQV 557
+L WKSS P+ F+LP+ +D + Y F++ ++D+ F V A+ G+ +E +L + R +S + V G +++ PG V+LLWDNS+SW TK L+Y V L+ T P ++ E+ A + + + G++ ++ + + + L ++ L +L + E T+++ + E L L R L L + GY D +
Sbjct: 80 ELQWKSSQVPIAASGGFQLPIKLDARKGELHYSFSTRDYDVNFGVQMICAD-GSLIE-LLDTRRYESQKQKVEGQLSLTGPGMVLLLWDNSFSWVNTKQLAYHVELKQETLPVSDAEKTQLALKARLEREQKLLQSEGEYDRLETQMQTEAQTIDFLRHQIEELQLQLRQHEEERETINKKKEQVGEHIEELCWELQALSWRCLDQAALHRILGYLGEKDLI 299
BLAST of EWM23121.1 vs. NCBI_GenBank
Match: gi|698784025|ref|XP_009825056.1| (hypothetical protein H257_02919 [Aphanomyces astaci] >gi|574119559|gb|ETV85038.1| hypothetical protein H257_02919 [Aphanomyces astaci]) HSP 1 Score: 88.1965 bits (217), Expect = 3.876e-16 Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 0
Query: 44 LYIGNKNDARNEAGLHERGITHILNCTPPRSLDPESGCPNFFEASHRGWVYKRIPIFDNRGEDILSFMPGAVAFIEQGTL 123
+++G++ A+N A L GITHILN TP R +DP +G PNFFE + + Y+R +FDN+GEDIL+ + G +AFI+Q
Sbjct: 13 VFLGSRQHAKNRAMLESLGITHILNVTPTRKVDPVAGVPNFFEKDNV-FTYRRCALFDNQGEDILTSLDGCIAFIDQAKF 91 The following BLAST results are available for this feature:
BLAST of EWM23121.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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