EWM23133.1, cds7540 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|585104012|gb|EWM23133.1| (arginine-trna-protein transferase 1 [Nannochloropsis gaditana]) HSP 1 Score: 437.958 bits (1125), Expect = 1.906e-155 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
Query: 1 MKKSSKHRDSTGPAGVNSPSTASLLNVATSTLPYSVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLMALGTEREDLEDKNSTSSARHSSISTVSSSGSIHSRGSQQSGGSRGRKHLKYKARERRSLALALRVGLLSTRTQRHQRPRGRTAAQ 216
MKKSSKHRDSTGPAGVNSPSTASLLNVATSTLPYSVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLMALGTEREDLEDKNSTSSARHSSISTVSSSGSIHSRGSQQSGGSRGRKHLKYKARERRSLALALRVGLLSTRTQRHQRPRGRTAAQ
Sbjct: 1 MKKSSKHRDSTGPAGVNSPSTASLLNVATSTLPYSVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLMALGTEREDLEDKNSTSSARHSSISTVSSSGSIHSRGSQQSGGSRGRKHLKYKARERRSLALALRVGLLSTRTQRHQRPRGRTAAQ 216
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|460390662|ref|XP_004240947.1| (PREDICTED: arginyl-tRNA--protein transferase 2 [Solanum lycopersicum]) HSP 1 Score: 114.005 bits (284), Expect = 1.385e-25 Identity = 58/129 (44.96%), Postives = 82/129 (63.57%), Query Frame = 0
Query: 35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLMALGTEREDLEDKNSTSSARHSSISTVSSSGSI 163
SVV GR CGYC+S G TS+S GL A+ L +DYQAL+D GWRRSG +LY+P E+TCCP YTIRL+ +DF PS+ QR+V + R + ++ E ++T ++ +S I+T S + S+
Sbjct: 25 SVVVEVGRRRNSCGYCKSGGP-----TSISHGLWARSLTVDDYQALLDRGWRRSGCFLYKPEMEKTCCPSYTIRLKANDFVPSKEQRRVLNRMQRFLDGTLDKSSDEFMDATDTSGNSEITTSSQNQSL 148
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|298714512|emb|CBJ27534.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 113.62 bits (283), Expect = 1.896e-25 Identity = 65/151 (43.05%), Postives = 90/151 (59.60%), Query Frame = 0
Query: 35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLMALGTEREDLEDKNSTSSARHSSISTVSSSGSIHSRGSQQSGGSRGRKHLKYKAR 185
S+VE+CG + +CGYC K TSVS+GL A+RL C DYQ LID GWRRSGT++Y+PV ETCCP YTIRL V FK ++ QR V L R + DK++ SS ++ + GS S G+ + G + +++L +A+
Sbjct: 5 SLVEICGTYRTKCGYC-----KPDTKTSVSYGLLAKRLTCADYQELIDRGWRRSGTFVYKPVMHETCCPQYTIRLDVTRFKHTKGQRHVLNRLRRYLD--------GDKDAGSSTDAANGQGDAGGGSNSSNGA--TNGRKKKRNLPQEAQ 140
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|970037145|ref|XP_015079923.1| (PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Solanum pennellii]) HSP 1 Score: 113.62 bits (283), Expect = 1.897e-25 Identity = 57/129 (44.19%), Postives = 82/129 (63.57%), Query Frame = 0
Query: 35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLMALGTEREDLEDKNSTSSARHSSISTVSSSGSI 163
S+V GR CGYC+S G TS+S GL A+ L +DYQAL+D GWRRSG +LY+P E+TCCP YTIRL+ +DF PS+ QR+V + R + ++ E ++T ++ +S I+T S + S+
Sbjct: 25 SIVVEVGRRRNSCGYCKSGGP-----TSISHGLWARSLTVDDYQALLDRGWRRSGCFLYKPEMEKTCCPSYTIRLKANDFVPSKEQRRVLNRMQRFLDGTLDKSSDEFMDATDTSGNSEITTSSQNQSL 148
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|802546917|ref|XP_012087612.1| (arginyl-tRNA--protein transferase 2 isoform X2 [Jatropha curcas]) HSP 1 Score: 112.079 bits (279), Expect = 5.912e-25 Identity = 57/118 (48.31%), Postives = 75/118 (63.56%), Query Frame = 0
Query: 35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRL----MALGTEREDLEDKNSTSS 148
+VV CGR CGYC+S GR TS+S GL A + +DYQ L+D GWRRSG +LY+P E+TCCP YTIRL+ DF PS+ Q +V + RL + + ED+ED+NS+ S
Sbjct: 22 TVVVDCGRRRSSCGYCRSNGR-----TSISHGLWAHSVTVDDYQDLLDRGWRRSGCFLYKPEMEKTCCPSYTIRLKASDFVPSKDQLRVFRRVQRLLDGTLDMKKAVEDVEDQNSSKS 134
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|802546915|ref|XP_012087606.1| (arginyl-tRNA--protein transferase 2 isoform X1 [Jatropha curcas] >gi|643738969|gb|KDP44783.1| hypothetical protein JCGZ_01283 [Jatropha curcas]) HSP 1 Score: 112.079 bits (279), Expect = 6.014e-25 Identity = 57/118 (48.31%), Postives = 75/118 (63.56%), Query Frame = 0
Query: 35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRL----MALGTEREDLEDKNSTSS 148
+VV CGR CGYC+S GR TS+S GL A + +DYQ L+D GWRRSG +LY+P E+TCCP YTIRL+ DF PS+ Q +V + RL + + ED+ED+NS+ S
Sbjct: 22 TVVVDCGRRRSSCGYCRSNGR-----TSISHGLWAHSVTVDDYQDLLDRGWRRSGCFLYKPEMEKTCCPSYTIRLKASDFVPSKDQLRVFRRVQRLLDGTLDMKKAVEDVEDQNSSKS 134
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|15229703|ref|NP_187733.1| (arginine-tRNA protein transferase 2 [Arabidopsis thaliana] >gi|75169266|sp|Q9C776.1|ATE2_ARATH RecName: Full=Arginyl-tRNA--protein transferase 2; Short=Arginyltransferase 2; Short=R-transferase 2; AltName: Full=Arginine-tRNA--protein transferase 2; AltName: Full=AtATE2 >gi|12321873|gb|AAG50969.1|AC073395_11 arginine-tRNA-protein transferase, putative; 58258-55831 [Arabidopsis thaliana] >gi|13877875|gb|AAK44015.1|AF370200_1 putative arginine-tRNA-protein transferase [Arabidopsis thaliana] >gi|15810659|gb|AAL07254.1| putative arginine-tRNA-protein transferase [Arabidopsis thaliana] >gi|332641498|gb|AEE75019.1| arginine-tRNA protein transferase 2 [Arabidopsis thaliana]) HSP 1 Score: 111.309 bits (277), Expect = 1.135e-24 Identity = 57/130 (43.85%), Postives = 77/130 (59.23%), Query Frame = 0
Query: 35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLM--ALGTEREDLEDKNSTSSARHSSISTVSSSGS 162
S+V CGR+ CGYC+S R S+S GL +RL DYQAL+D GWRRSG YLY+P E+TCCP YTIRL+ DF PS+ Q++V + R + L + + + S +R S+S S G+
Sbjct: 23 SIVADCGRNKSTCGYCKSSTR-----FSISHGLWTERLTVNDYQALLDSGWRRSGCYLYKPEMEKTCCPSYTIRLKASDFVPSKEQQRVRRRIERFLDGELDAKPSEQTEDQDVSFSREVSVSVKKSLGA 147
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|950951953|ref|XP_014495816.1| (PREDICTED: arginyl-tRNA--protein transferase 1-like [Vigna radiata var. radiata]) HSP 1 Score: 110.923 bits (276), Expect = 1.486e-24 Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = 0
Query: 35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLM--ALGTER-EDLEDKN-STSSARHS 152
SVVE CGR CGYC+S ++ S+S G+ A L +DYQ L+D GWRRSG++LY+P E TCCP YTIRL+ D+ PS+ Q +V+ + R + AL +R E +ED+N ST S HS
Sbjct: 12 SVVEDCGRRRTSCGYCRS-----SRHNSISHGMWAHSLTVDDYQDLLDRGWRRSGSFLYKPEMERTCCPSYTIRLKASDYVPSKEQLRVSRRMQRFLDGALDVKRVEAMEDRNTSTKSENHS 128
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|1069940688|ref|XP_018297798.1| (hypothetical protein PHYBLDRAFT_139785 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026595379|gb|OAD79758.1| hypothetical protein PHYBLDRAFT_139785 [Phycomyces blakesleeanus NRRL 1555(-)]) HSP 1 Score: 108.612 bits (270), Expect = 1.921e-24 Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 0
Query: 34 YSVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLMALGTEREDLEDKNSTSSA 149
+S+V L G + G CGYC QK TS +FG+ A L CEDYQ LID GWRRSG YLY+P E +CCP YTIRL ++K ++SQRKV L+R + +D ++TS +
Sbjct: 7 FSLVSLVGSNQGDCGYCH------QKDTSHTFGIWAHVLTCEDYQTLIDHGWRRSGHYLYKPNLERSCCPQYTIRLNAVEYKQTKSQRKVVNKLNRFLEGDWAPKDTNSMDTTSES 116
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|1025340311|ref|XP_016508050.1| (PREDICTED: arginyl-tRNA--protein transferase 2-like, partial [Nicotiana tabacum]) HSP 1 Score: 108.227 bits (269), Expect = 1.947e-24 Identity = 55/115 (47.83%), Postives = 71/115 (61.74%), Query Frame = 0
Query: 35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLM--ALGTEREDLEDKNSTS 147
+VV GR CGYC+S G TS+S G+ A+ L +DYQAL+D GWRRSG +LY+P E+TCCP YTIRLR +F PS+ QR+V + R + L +DL D TS
Sbjct: 34 TVVADVGRRRNSCGYCKSVGP-----TSISHGVWARSLTVDDYQALLDRGWRRSGCFLYKPEMEKTCCPSYTIRLRAGEFVPSKEQRRVLKSMQRFLDGTLDRRSDDLMDTTDTS 143 The following BLAST results are available for this feature:
BLAST of EWM23133.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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