EWM23133.1, cds7540 (CDS) Nannochloropsis gaditana

Overview
NameEWM23133.1
Unique Namecds7540
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:243532..244066 +
Alignment locationCM002472.1:244325..244440 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23133.1
Productarginine-trna-protein transferase 1
Orig transcript idgnl|cribi|Naga_100523g2.1486.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:243532..244066 +
CM002472.1supercontigCM002472.1:244325..244440 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0042221response to chemical
GO:0006464cellular protein modification process
GO:0006629lipid metabolic process
GO:0009791post-embryonic development
GO:0009719response to endogenous stimulus
GO:0009056catabolic process
GO:0009605response to external stimulus
GO:0009607response to biotic stimulus
GO:0016598protein arginylation
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004057arginyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR007471Arg_tRNA_PTrfase_N
Homology
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|585104012|gb|EWM23133.1| (arginine-trna-protein transferase 1 [Nannochloropsis gaditana])

HSP 1 Score: 437.958 bits (1125), Expect = 1.906e-155
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
Query:    1 MKKSSKHRDSTGPAGVNSPSTASLLNVATSTLPYSVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLMALGTEREDLEDKNSTSSARHSSISTVSSSGSIHSRGSQQSGGSRGRKHLKYKARERRSLALALRVGLLSTRTQRHQRPRGRTAAQ 216
            MKKSSKHRDSTGPAGVNSPSTASLLNVATSTLPYSVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLMALGTEREDLEDKNSTSSARHSSISTVSSSGSIHSRGSQQSGGSRGRKHLKYKARERRSLALALRVGLLSTRTQRHQRPRGRTAAQ
Sbjct:    1 MKKSSKHRDSTGPAGVNSPSTASLLNVATSTLPYSVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLMALGTEREDLEDKNSTSSARHSSISTVSSSGSIHSRGSQQSGGSRGRKHLKYKARERRSLALALRVGLLSTRTQRHQRPRGRTAAQ 216          
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|460390662|ref|XP_004240947.1| (PREDICTED: arginyl-tRNA--protein transferase 2 [Solanum lycopersicum])

HSP 1 Score: 114.005 bits (284), Expect = 1.385e-25
Identity = 58/129 (44.96%), Postives = 82/129 (63.57%), Query Frame = 0
Query:   35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLMALGTEREDLEDKNSTSSARHSSISTVSSSGSI 163
            SVV   GR    CGYC+S G      TS+S GL A+ L  +DYQAL+D GWRRSG +LY+P  E+TCCP YTIRL+ +DF PS+ QR+V   + R +    ++   E  ++T ++ +S I+T S + S+
Sbjct:   25 SVVVEVGRRRNSCGYCKSGGP-----TSISHGLWARSLTVDDYQALLDRGWRRSGCFLYKPEMEKTCCPSYTIRLKANDFVPSKEQRRVLNRMQRFLDGTLDKSSDEFMDATDTSGNSEITTSSQNQSL 148          
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|298714512|emb|CBJ27534.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 113.62 bits (283), Expect = 1.896e-25
Identity = 65/151 (43.05%), Postives = 90/151 (59.60%), Query Frame = 0
Query:   35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLMALGTEREDLEDKNSTSSARHSSISTVSSSGSIHSRGSQQSGGSRGRKHLKYKAR 185
            S+VE+CG +  +CGYC     K    TSVS+GL A+RL C DYQ LID GWRRSGT++Y+PV  ETCCP YTIRL V  FK ++ QR V   L R +          DK++ SS   ++    +  GS  S G+  + G + +++L  +A+
Sbjct:    5 SLVEICGTYRTKCGYC-----KPDTKTSVSYGLLAKRLTCADYQELIDRGWRRSGTFVYKPVMHETCCPQYTIRLDVTRFKHTKGQRHVLNRLRRYLD--------GDKDAGSSTDAANGQGDAGGGSNSSNGA--TNGRKKKRNLPQEAQ 140          
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|970037145|ref|XP_015079923.1| (PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Solanum pennellii])

HSP 1 Score: 113.62 bits (283), Expect = 1.897e-25
Identity = 57/129 (44.19%), Postives = 82/129 (63.57%), Query Frame = 0
Query:   35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLMALGTEREDLEDKNSTSSARHSSISTVSSSGSI 163
            S+V   GR    CGYC+S G      TS+S GL A+ L  +DYQAL+D GWRRSG +LY+P  E+TCCP YTIRL+ +DF PS+ QR+V   + R +    ++   E  ++T ++ +S I+T S + S+
Sbjct:   25 SIVVEVGRRRNSCGYCKSGGP-----TSISHGLWARSLTVDDYQALLDRGWRRSGCFLYKPEMEKTCCPSYTIRLKANDFVPSKEQRRVLNRMQRFLDGTLDKSSDEFMDATDTSGNSEITTSSQNQSL 148          
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|802546917|ref|XP_012087612.1| (arginyl-tRNA--protein transferase 2 isoform X2 [Jatropha curcas])

HSP 1 Score: 112.079 bits (279), Expect = 5.912e-25
Identity = 57/118 (48.31%), Postives = 75/118 (63.56%), Query Frame = 0
Query:   35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRL----MALGTEREDLEDKNSTSS 148
            +VV  CGR    CGYC+S GR     TS+S GL A  +  +DYQ L+D GWRRSG +LY+P  E+TCCP YTIRL+  DF PS+ Q +V   + RL    + +    ED+ED+NS+ S
Sbjct:   22 TVVVDCGRRRSSCGYCRSNGR-----TSISHGLWAHSVTVDDYQDLLDRGWRRSGCFLYKPEMEKTCCPSYTIRLKASDFVPSKDQLRVFRRVQRLLDGTLDMKKAVEDVEDQNSSKS 134          
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|802546915|ref|XP_012087606.1| (arginyl-tRNA--protein transferase 2 isoform X1 [Jatropha curcas] >gi|643738969|gb|KDP44783.1| hypothetical protein JCGZ_01283 [Jatropha curcas])

HSP 1 Score: 112.079 bits (279), Expect = 6.014e-25
Identity = 57/118 (48.31%), Postives = 75/118 (63.56%), Query Frame = 0
Query:   35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRL----MALGTEREDLEDKNSTSS 148
            +VV  CGR    CGYC+S GR     TS+S GL A  +  +DYQ L+D GWRRSG +LY+P  E+TCCP YTIRL+  DF PS+ Q +V   + RL    + +    ED+ED+NS+ S
Sbjct:   22 TVVVDCGRRRSSCGYCRSNGR-----TSISHGLWAHSVTVDDYQDLLDRGWRRSGCFLYKPEMEKTCCPSYTIRLKASDFVPSKDQLRVFRRVQRLLDGTLDMKKAVEDVEDQNSSKS 134          
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|15229703|ref|NP_187733.1| (arginine-tRNA protein transferase 2 [Arabidopsis thaliana] >gi|75169266|sp|Q9C776.1|ATE2_ARATH RecName: Full=Arginyl-tRNA--protein transferase 2; Short=Arginyltransferase 2; Short=R-transferase 2; AltName: Full=Arginine-tRNA--protein transferase 2; AltName: Full=AtATE2 >gi|12321873|gb|AAG50969.1|AC073395_11 arginine-tRNA-protein transferase, putative; 58258-55831 [Arabidopsis thaliana] >gi|13877875|gb|AAK44015.1|AF370200_1 putative arginine-tRNA-protein transferase [Arabidopsis thaliana] >gi|15810659|gb|AAL07254.1| putative arginine-tRNA-protein transferase [Arabidopsis thaliana] >gi|332641498|gb|AEE75019.1| arginine-tRNA protein transferase 2 [Arabidopsis thaliana])

HSP 1 Score: 111.309 bits (277), Expect = 1.135e-24
Identity = 57/130 (43.85%), Postives = 77/130 (59.23%), Query Frame = 0
Query:   35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLM--ALGTEREDLEDKNSTSSARHSSISTVSSSGS 162
            S+V  CGR+   CGYC+S  R      S+S GL  +RL   DYQAL+D GWRRSG YLY+P  E+TCCP YTIRL+  DF PS+ Q++V   + R +   L  +  +  +    S +R  S+S   S G+
Sbjct:   23 SIVADCGRNKSTCGYCKSSTR-----FSISHGLWTERLTVNDYQALLDSGWRRSGCYLYKPEMEKTCCPSYTIRLKASDFVPSKEQQRVRRRIERFLDGELDAKPSEQTEDQDVSFSREVSVSVKKSLGA 147          
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|950951953|ref|XP_014495816.1| (PREDICTED: arginyl-tRNA--protein transferase 1-like [Vigna radiata var. radiata])

HSP 1 Score: 110.923 bits (276), Expect = 1.486e-24
Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = 0
Query:   35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLM--ALGTER-EDLEDKN-STSSARHS 152
            SVVE CGR    CGYC+S      ++ S+S G+ A  L  +DYQ L+D GWRRSG++LY+P  E TCCP YTIRL+  D+ PS+ Q +V+  + R +  AL  +R E +ED+N ST S  HS
Sbjct:   12 SVVEDCGRRRTSCGYCRS-----SRHNSISHGMWAHSLTVDDYQDLLDRGWRRSGSFLYKPEMERTCCPSYTIRLKASDYVPSKEQLRVSRRMQRFLDGALDVKRVEAMEDRNTSTKSENHS 128          
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|1069940688|ref|XP_018297798.1| (hypothetical protein PHYBLDRAFT_139785 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026595379|gb|OAD79758.1| hypothetical protein PHYBLDRAFT_139785 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 108.612 bits (270), Expect = 1.921e-24
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 0
Query:   34 YSVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLMALGTEREDLEDKNSTSSA 149
            +S+V L G + G CGYC       QK TS +FG+ A  L CEDYQ LID GWRRSG YLY+P  E +CCP YTIRL   ++K ++SQRKV   L+R +      +D    ++TS +
Sbjct:    7 FSLVSLVGSNQGDCGYCH------QKDTSHTFGIWAHVLTCEDYQTLIDHGWRRSGHYLYKPNLERSCCPQYTIRLNAVEYKQTKSQRKVVNKLNRFLEGDWAPKDTNSMDTTSES 116          
BLAST of EWM23133.1 vs. NCBI_GenBank
Match: gi|1025340311|ref|XP_016508050.1| (PREDICTED: arginyl-tRNA--protein transferase 2-like, partial [Nicotiana tabacum])

HSP 1 Score: 108.227 bits (269), Expect = 1.947e-24
Identity = 55/115 (47.83%), Postives = 71/115 (61.74%), Query Frame = 0
Query:   35 SVVELCGRHVGRCGYCQSKGRKGQKYTSVSFGLSAQRLLCEDYQALIDLGWRRSGTYLYRPVNEETCCPCYTIRLRVDDFKPSRSQRKVAAHLHRLM--ALGTEREDLEDKNSTS 147
            +VV   GR    CGYC+S G      TS+S G+ A+ L  +DYQAL+D GWRRSG +LY+P  E+TCCP YTIRLR  +F PS+ QR+V   + R +   L    +DL D   TS
Sbjct:   34 TVVADVGRRRNSCGYCKSVGP-----TSISHGVWARSLTVDDYQALLDRGWRRSGCFLYKPEMEKTCCPSYTIRLRAGEFVPSKEQRRVLKSMQRFLDGTLDRRSDDLMDTTDTS 143          
The following BLAST results are available for this feature:
BLAST of EWM23133.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104012|gb|EWM23133.1|1.906e-155100.00arginine-trna-protein transferase 1 [Nannochlorops... [more]
gi|460390662|ref|XP_004240947.1|1.385e-2544.96PREDICTED: arginyl-tRNA--protein transferase 2 [So... [more]
gi|298714512|emb|CBJ27534.1|1.896e-2543.05conserved unknown protein [Ectocarpus siliculosus][more]
gi|970037145|ref|XP_015079923.1|1.897e-2544.19PREDICTED: arginyl-tRNA--protein transferase 2-lik... [more]
gi|802546917|ref|XP_012087612.1|5.912e-2548.31arginyl-tRNA--protein transferase 2 isoform X2 [Ja... [more]
gi|802546915|ref|XP_012087606.1|6.014e-2548.31arginyl-tRNA--protein transferase 2 isoform X1 [Ja... [more]
gi|15229703|ref|NP_187733.1|1.135e-2443.85arginine-tRNA protein transferase 2 [Arabidopsis t... [more]
gi|950951953|ref|XP_014495816.1|1.486e-2448.36PREDICTED: arginyl-tRNA--protein transferase 1-lik... [more]
gi|1069940688|ref|XP_018297798.1|1.921e-2447.41hypothetical protein PHYBLDRAFT_139785 [Phycomyces... [more]
gi|1025340311|ref|XP_016508050.1|1.947e-2447.83PREDICTED: arginyl-tRNA--protein transferase 2-lik... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7558rna7558Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications