EWM23164.1, cds7538 (CDS) Nannochloropsis gaditana

Overview
NameEWM23164.1
Unique Namecds7538
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:233475..234311 +
Alignment locationCM002472.1:234531..234770 +
Alignment locationCM002472.1:234879..235046 +
Alignment locationCM002472.1:235297..236037 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23164.1
Productfact complex subunit ssrp1
Orig transcript idgnl|cribi|Naga_100043g46.7247.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:233475..234311 +
CM002472.1supercontigCM002472.1:234531..234770 +
CM002472.1supercontigCM002472.1:234879..235046 +
CM002472.1supercontigCM002472.1:235297..236037 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom
IPR013719DUF1747
IPR024954SSRP1_dom
IPR009071HMG_box_dom
IPR000969SSrcognition
Homology
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|585104045|gb|EWM23164.1| (fact complex subunit ssrp1 [Nannochloropsis gaditana])

HSP 1 Score: 1345.49 bits (3481), Expect = 0.000e+0
Identity = 661/661 (100.00%), Postives = 661/661 (100.00%), Query Frame = 0
Query:    1 MATIEKFENIGLSGQSVGTLTFTGKGLEWRGPSNAKTVQAKDILRASWSVFGKWGHLRLFLKNGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDDGAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRWAFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKAKKKEEAAESGGRAVREWG 661
            MATIEKFENIGLSGQSVGTLTFTGKGLEWRGPSNAKTVQAKDILRASWSVFGKWGHLRLFLKNGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDDGAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRWAFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKAKKKEEAAESGGRAVREWG
Sbjct:    1 MATIEKFENIGLSGQSVGTLTFTGKGLEWRGPSNAKTVQAKDILRASWSVFGKWGHLRLFLKNGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDDGAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRWAFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKAKKKEEAAESGGRAVREWG 661          
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|298706803|emb|CBJ29726.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 427.557 bits (1098), Expect = 4.724e-138
Identity = 257/648 (39.66%), Postives = 378/648 (58.33%), Query Frame = 0
Query:    7 FENIGLSGQSVGTLTFTGKGLEWRG--PSNAKTVQAKDILRASWSVFGKWGHLRLFLK-NGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDD---GAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRW-AFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGA--VGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKAKK 645
            F  IG+ G S+G L  T + L W     S++K V+  D+  A+W+ +  + HLRLF+K + + +R DGF + +   + E F S   +SL  E  N GG NYGD+   DN +  S  +K + +L +  VSQCV+PG     N+VELQ  E+DA D+ EDTLV +R  +P  +E+ D    AE+ Q  V+ R  +    G  LV F E +G F +PRGRY + +Y++  R+HG++YD+K+ Y+DI   FLLE+PD R+ AFVI L KPIRQGQQ+Y +LVL+T    + +TVNM+ E+L++KY+  L   M GP+H+L+AK FK+LS K VY + +F S    + VKC+L A+EG LYPL+K+F+FI+KPT  I F +IESV F R GGA   GVTR FDL V  + + G+  + Y+F+ I++ E+++L  +L  K+             +I  + E   +    +  + ++ + YK      +G   E  ++      + G    E S   +      +++ K  KK+   GS ++G  +            KKR      + P  KKKRAKKD +APK A+SA+M F+QA+R  VK + P LKVTEISKV+GE+W  L   +KK ++D+A   K RY  E  AY +KK
Sbjct:    3 FSKIGVQGYSLGNLQLTAEELNWTSDDKSSSKKVKWLDVSHATWAQYAAYCHLRLFMKRDARPVRLDGFSKAQHADI-EKFLSERDVSLSNESPNPGGGNYGDIEVLDNIVRFSSGNKTLFDLNIKDVSQCVMPGVKK-SNDVELQLHESDATDQTEDTLVAIRVTLPEKDEDTDERSPAESLQMAVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTKDEATITVNMSAEDLQKKYDSNLNSEMIGPLHNLIAKIFKVLSNKPVYVTGKFSSTNGAKAVKCALGANEGYLYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAGVTRNFDLCVAPKSVAGETPKPYVFSGIDRSEYSSLYSFLSTKKL------------RIKNIKESGNDNAMLQLGDLDDHDPYKAALDDDQGEDEESEDDADYAPDARGGSDAESSSDSDGDEDSDDRAHKTSKKRPGTGSAKKGPTQ------------KKRASGGGSSKPAPKKKRAKKDKDAPKGAMSAFMQFSQANRAQVKTDNPELKVTEISKVLGEKWGKLDETQKKPYQDKADEDKARYKRERDAYDSKK 624          
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|224002190|ref|XP_002290767.1| (structure specific recognition protein 1 [Thalassiosira pseudonana CCMP1335] >gi|220974189|gb|EED92519.1| structure specific recognition protein 1 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 379.793 bits (974), Expect = 3.919e-118
Identity = 246/651 (37.79%), Postives = 359/651 (55.15%), Query Frame = 0
Query:   36 KTVQAKDILRASWSVFGKWGHLRLFLKN--------GKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDD-------GAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDH-RWAFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLL--RPLDGDVRREYIFAQIEKEEHANLSQYLRDKQT-IKVID----DKPVSQAKIDRMLEEEEEGGEE--EDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEE-------MTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKAKKKEEAAESGG 654
            +T+    I  A W++FGK GHLR+  K           ALR DGF  ++ +R+ E FQ+ Y ++L+R  ++S GA++G+    +  L    + + +L L LG VSQCVLPG  N +NE+E+QF+E+D  +   D LV +RFY+PP ++ D         AE  Q  +    +V+ ++G  +  F E++G FL PRGRY I LY +  RL GAKYD+K+ YDDI   FLL + D    AFVI L KPIRQGQQRYN LV+Q     SE+ +N+ +  + ++Y   ++  M G   +LVAKTFK+++ KKV+   +F +A     VKC+L+A+EG LYPL+K F+FI+KP + I F +IESV F R  G  G TR FDL V L   P D    +EY F+ I+K  +A+L  +L  K+  IK I+    ++P   A    M  E +EGGEE  E  EDE+ +  K  ES    S  +  ++ GS        M ++SDL E        +  K  K  K  KK  +KGS +    E+++++ D                           PNAPK+ LSA+  FT A R  +KA  P     E++K++G  ++ LSA EK  +E+ AA+ K RY +E+ +Y   +++   ES G
Sbjct:   11 RTLPQNAIAGALWTIFGKSGHLRVLTKTLEGSKTKLPAALRFDGFPPSDFDRLTEAFQTMYGITLKRHSMSSAGASWGNTDIANKHLFEPRDGEEMLSLDLGEVSQCVLPG--NNRNEIEMQFLESDTVEAGTDQLVAIRFYVPPDQDADPTDKDAPTSAELLQSRITEVASVKKTSGAIIAEFDENKGTFLTPRGRYSIELYDSFLRLRGAKYDYKIKYDDISRLFLLPKQDDMHMAFVIALDKPIRQGQQRYNMLVMQCTKEQSELNINLDDATIEKEYNGEIQAHMNGSFSNLVAKTFKVITKKKVFIPGKFANANQQACVKCALRANEGHLYPLEKQFIFIHKPAVLIRFDEIESVEFQRYAGGQGSTRNFDLSVSLINTPGDNLAVKEYTFSGIDKTNYASLYSFLSQKKIRIKNIEGIGSEEPARSAP---MYNEMDEGGEEMGESSEDEDYDQAKASESEESSSDEDDDDDLGS--------MSDDSDLAEHRKKAAKKSKDKSSKKEKPSKKSADKGSNKRKEPEKKKKQKD---------------------------PNAPKRGLSAFNFFTSAKRGDIKAANPDASFAELAKLVGAEFKGLSASEKAKYEELAANDKKRYEKEMESYVPPEEDSDDESDG 621          
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|397631195|gb|EJK70063.1| (hypothetical protein THAOC_08612 [Thalassiosira oceanica])

HSP 1 Score: 380.563 bits (976), Expect = 7.112e-118
Identity = 252/674 (37.39%), Postives = 369/674 (54.75%), Query Frame = 0
Query:    7 FENIGLSGQSVGTLTFTGKGLEWRGP-------SNAKTVQAKDILRASWSVFGKWGHLRLFLKNGK---------ALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVM---SLED--------KP-----VLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDD-------GAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRW-AFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGD--VRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEEL 638
            +++IGL G +VGT + T  G+ W+            + +  + I  A W+VFGK GHLR+  K  +         A+R DGF  T+ E + E  +  + ++L+R  ++S G+++G+    +  LV    +LED        +P     ++ L LG VSQCVLPG  N +NE+E+QF+E+D  +   D LV +RFY+PP  + D         AEA Q  ++   +V+ ++G  +  F E +G FL PRGRY I LY +  RL GAKYD+K+ YDDI   FLL R D    AFVI L KPIRQGQQRYN LV+Q     SE+ +N+ E  L ++Y  ++EQ M G   +LVAKTFK+++ KKV+   +F ++     VKC+L+A+EG LYPL+K F+FI+KP + I F +IESV F R  G  G TR FDL V L    GD    +EY F+ I+K  +A L  +L  K+ IK+ + + V +       E ++ G    DE   +DE     +       S+ S+    DDS  G+ + ++SDL        E   K  KKK       E   +   ++       +K+  KK KA P K+KK+ K+DPNAPK   SAY+ FT A R  +K   P     +ISK++G+ ++ LS  EK+ +++ A   K RY  E+
Sbjct:    8 WKHIGLYGHAVGTFSATRHGIMWKSSVMGNDDIETKRVLPRESISGALWTVFGKSGHLRVLTKAPREGEQTKLPAAMRFDGFPGTDYEAMSEALRDLFGVTLKRHSMSSAGSSWGNTDISNKHLVFRQCNLEDADEDGQEFEPRDGDEMMSLDLGEVSQCVLPG--NNRNEIEMQFLESDTVEAGTDQLVALRFYVPPDADADPTDKDAPTSAEALQSRIMQIASVKKTSGSIIAEFDEGKGTFLTPRGRYSIELYDSFLRLRGAKYDYKIKYDDISRLFLLPRQDDMTVAFVIALDKPIRQGQQRYNMLVMQCTKEHSELNINLDEATLEKEYGGQIEQHMNGSFSNLVAKTFKVITRKKVFIPGKFANSNQQACVKCALRANEGHLYPLEKQFIFIHKPAVLIRFDEIESVEFQRYAGGQGSTRNFDLCVSLHSTPGDSASTKEYTFSGIDKSNYAALYSFLSGKK-IKIKNLEGVGE-------EPKKPGAPRYDERMSDDEESDDSDFDENAPKSDDSDSDSDDDSDLGSVVSDDSDLA-------EHRKKSKKKKPAPKKKAEPDSDSSSDDDSDEEEERKKPSKKRKAEPSKQKKK-KRDPNAPKAPKSAYVFFTSAKRSEIKEANPDAGFGDISKLLGKAYKELSDAEKEPYDEMARKDKARYKREM 663          
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|1210519476|dbj|GAX21600.1| (structure-specific recognition protein 1 [Fistulifera solaris])

HSP 1 Score: 348.977 bits (894), Expect = 6.454e-106
Identity = 192/489 (39.26%), Postives = 280/489 (57.26%), Query Frame = 0
Query:    7 FENIGLSGQSVGTLTFTGKGLEWRGP-------------SNAKTVQAKDILRASWSVFGKWGHLRLFLKNGKA---LRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYG-------DLIFEDNTLV------MSLEDKP---VLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDD-------GAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDH-RWAFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEE 455
            +++IGL G S+GTL+   + + W+G              +  + + A  I  A W+VFG+ GHLR+ +++ K    LR DGF   + + +++  Q  Y+++++   ++S G  YG        L+F    L          E +P   ++ L L  VSQCVLPG  N +NE+E+QF E+DA +   D LV +RFYIPP  + D         AE  Q  ++A   V+ +TGD + TF   +G FL PRGRY + LY    RL G KYD+K+ YDDI   FLL +PD    AFVI L KPIRQGQQRY YLVLQ      EVT+ + E+ L ++Y+  L+  M G + +L+AKTFK++SGKKV+   +F ++     VKC+++A+EGLLYPL+K F+FI+KP + I F +IESV F R  G  G TR FDL V L+  +    +EYIF+ I++ ++A L  +L  KQ        P+   +    +EE+E
Sbjct:    9 WKHIGLHGHSMGTLSLLKERITWKGALTGGGAADDEYQGTMVRNIPASAIKGAQWTVFGRSGHLRIQIQDEKLPHELRFDGFPAQDVDILKDALQQQYNIAMQLHTMSSAGTQYGLTSVQGKQLLFRHCVLDEMNEEGQEFEPRPEHEMMSLNLAEVSQCVLPG--NNRNEIEVQFPESDAVEAGTDQLVSIRFYIPPDLDADPSDKTAPTAAELLQAKIMATAQVRKTTGDVICTFDAAKGTFLTPRGRYGMELYDRFLRLRGQKYDYKIKYDDINRLFLLPKPDEVHMAFVIALDKPIRQGQQRYQYLVLQAPKDPDEVTIALDEDTLEKEYKGELQPVMRGSLSNLIAKTFKVISGKKVFIPGKFANSNEQACVKCAVRANEGLLYPLEKQFVFIHKPPIIIRFNEIESVEFQRYAGGQGSTRNFDLCVNLKDPEQSSTKEYIFSGIDRSDYAGLYNFLNGKQI-------PIKNLQGSGFMEEDE 488          

HSP 2 Score: 68.5514 bits (166), Expect = 2.929e-8
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 0
Query:  558 AGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKA 643
             G    KK+ KKDPNAPK++ ++Y+ F    R  +K E P +   E  K +GE +RALSA+EKK +E+ A   K R  +E+ +YK+
Sbjct:  675 TGDATTKKKEKKDPNAPKRSKTSYIFFADEMRVKLKKENPSMTFGETGKKIGEMFRALSADEKKKYEEMAQKDKERARKEMASYKS 760          
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|1210526340|dbj|GAX14828.1| (structure-specific recognition protein 1 [Fistulifera solaris])

HSP 1 Score: 347.821 bits (891), Expect = 1.364e-105
Identity = 194/489 (39.67%), Postives = 281/489 (57.46%), Query Frame = 0
Query:    7 FENIGLSGQSVGTLTFTGKGLEWRGP-------------SNAKTVQAKDILRASWSVFGKWGHLRLFLKNGKA---LRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYG-------DLIFEDNTLV------MSLEDKP---VLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDD-------GAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDH-RWAFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEE 455
            +++IGL G S+GTL+ T + + W+G              +  + + A  I  A W+VFG+ GHLR+ +++ K    LR DGF   + + +++  Q  Y+++++   ++S G  YG        L+F    L          E +P   ++ L L  VSQCVLPG  N +NE+E+QF E+DA +   D LV +RFYIPP  + D         AE  Q  ++A   V+ +TGD + TF   +G FL PRGRY + LY    RL G KYD+K+ YDDI   FLL +PD    AFVI L KPIRQGQQRY YLVLQ      EVT+ + EE L ++Y+  L+  M G + +L+AKTFK++SGKKV+   +F ++     VKC+++A+EGLLYPL+K F+FI+KP + I F +IESV F R  G  G TR FDL V L+  +    +EYIF+ I++ ++A L  +L  KQ        P+   +    +EE+E
Sbjct:    8 WKHIGLHGHSMGTLSLTKERITWKGALTGGGTADDDFQGTMVRNIPALSIKGAQWTVFGRSGHLRIQIQDDKLPHELRFDGFPAQDIDILKDALQQQYNIAMQLHPMSSAGTQYGLTSVKGKQLVFRHCVLDEINEEGQEFEPRPEHEMMSLNLAEVSQCVLPG--NNRNEIEVQFPESDAVEAGTDQLVSIRFYIPPDLDADPSDKTAPTAAELLQAKIMATAQVRKTTGDVICTFDAAKGTFLTPRGRYGMELYDRFLRLRGQKYDYKIKYDDINRLFLLPKPDEVHMAFVIALDKPIRQGQQRYQYLVLQAPKDPDEVTIALDEETLEKEYKGELQPVMRGSLSNLIAKTFKVISGKKVFIPGKFANSNEQACVKCAVRANEGLLYPLEKQFVFIHKPPIIIRFNEIESVEFQRYAGGQGSTRNFDLCVNLKDPEQST-KEYIFSGIDRSDYAGLYNFLNGKQI-------PIKNLQGSGFMEEDE 486          
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|641771800|ref|XP_008169898.1| (PREDICTED: FACT complex subunit SSRP1 isoform X1 [Chrysemys picta bellii])

HSP 1 Score: 337.035 bits (863), Expect = 1.568e-102
Identity = 214/629 (34.02%), Postives = 337/629 (53.58%), Query Frame = 0
Query:   18 GTLTFTGKGLEWRGPSNAKT--VQAKDILRASWSVFGKWGHLRLFLKNGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEED-DGAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRWAF-VIGLKKPIRQGQQRYNYLVLQ-THDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAY 641
            G L  + +G+ ++     K   +QA ++    W        L+L  KNG   + DGF  +E +++ E F+S+Y L L  + L   G N+G + F    L   + ++PV E+PL  VSQC    TG  KNEV L+F + D A   E +L+EVRFY+PP +E+  D  EAF +NVL++  V  +TGDA+  F E +   L PRGRY I +Y     LHG  +D+K+ Y  ++  FLL   D R  F VI L  PI+QGQ RY++L+L  + D    +T+NM E+E+ +++E RL + M+G ++ +V++  K L  +K+     FQ     + + CS KAS GLLYPL++ F++++KP ++I F +I  V+F R       TR+FD  +     +     +Y F+ IE+EE+  L  ++  K+    I ++   + K       +E    +ED+ D   E  K E    E +  + S+E G +   S     E+ D+ E    +   SS GG  +              EE+       K  K +K +  P + KK   KDPNAPK+ +SAYML+  ASRE +K++ PG+ +T++SK  GE W+ +S E+K+ ++ +A  AK  Y + ++ Y
Sbjct:   21 GRLRLSRQGVIFKNSKTGKVDNIQASELAEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFDKLSEFFKSHYRLELAEKDLCVKGWNWGTVKFGGQLLSFDIGEQPVFEIPLSNVSQCT---TG--KNEVTLEFHQNDDA---EVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQC--LTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEDEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEI-----ETKQGTQYTFSSIEREEYGKLFDFVNAKKL--NIKNRGHKEKKKSMPQSYDEYADSDEDQHDAYLERMKEEGKIREENADDSSDESGEETDESFNPGEEDEDVAEEFDSEVSASSDGGSDR--------------EEKRKPAKKAKIVKERKPRKKPSESKK--GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGELWKGMSKEKKEEWDRKAEDAKRDYEKAMKEY 613          
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|641771802|ref|XP_008169899.1| (PREDICTED: FACT complex subunit SSRP1 isoform X2 [Chrysemys picta bellii])

HSP 1 Score: 335.495 bits (859), Expect = 5.878e-102
Identity = 216/630 (34.29%), Postives = 335/630 (53.17%), Query Frame = 0
Query:   18 GTLTFTGKGLEWRGPSNAKT--VQAKDILRASWSVFGKWGHLRLFLKNGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEED-DGAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRWAF-VIGLKKPIRQGQQRYNYLVLQ-THDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQ-TIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAY 641
            G L  + +G+ ++     K   +QA ++    W        L+L  KNG   + DGF  +E +++ E F+S+Y L L  + L   G N+G + F    L   + ++PV E+PL  VSQC    TG  KNEV L+F + D A   E +L+EVRFY+PP +E+  D  EAF +NVL++  V  +TGDA+  F E +   L PRGRY I +Y     LHG  +D+K+ Y  ++  FLL   D R  F VI L  PI+QGQ RY++L+L  + D    +T+NM E+E+ +++E RL + M+G ++ +V++  K L  +K+     FQ     + + CS KAS GLLYPL++ F++++KP ++I F +I  V+F R       TR+FD  +     +     +Y F+ IE+EE+  L  ++  K+  IK    K       D      E    +ED+ D   E  K E    E +  + S+E G +   S     E+ D+ E    +   SS GG  +              EE+       K  K +K +  P + KK   KDPNAPK+ +SAYML+  ASRE +K++ PG+ +T++SK  GE W+ +S E+K+ ++ +A  AK  Y + ++ Y
Sbjct:   21 GRLRLSRQGVIFKNSKTGKVDNIQASELAEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFDKLSEFFKSHYRLELAEKDLCVKGWNWGTVKFGGQLLSFDIGEQPVFEIPLSNVSQCT---TG--KNEVTLEFHQNDDA---EVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQC--LTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEDEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEI-----ETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGHKESMPQSYD------EYADSDEDQHDAYLERMKEEGKIREENADDSSDESGEETDESFNPGEEDEDVAEEFDSEVSASSDGGSDR--------------EEKRKPAKKAKIVKERKPRKKPSESKK--GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGELWKGMSKEKKEEWDRKAEDAKRDYEKAMKEY 610          
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|918645292|ref|XP_013361928.1| (PREDICTED: FACT complex subunit SSRP1 isoform X1 [Chinchilla lanigera] >gi|918645294|ref|XP_013361929.1| PREDICTED: FACT complex subunit SSRP1 isoform X1 [Chinchilla lanigera] >gi|918645296|ref|XP_013361930.1| PREDICTED: FACT complex subunit SSRP1 isoform X1 [Chinchilla lanigera])

HSP 1 Score: 333.569 bits (854), Expect = 3.947e-101
Identity = 221/641 (34.48%), Postives = 347/641 (54.13%), Query Frame = 0
Query:   18 GTLTFTGKGLEWRGPSNAKT--VQAKDILRASWSVFGKWGHLRLFLKNGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEED-DGAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRWAF-VIGLKKPIRQGQQRYNYLVLQ-THDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQ-TIKVIDDKPVSQAKIDRMLEEEEEG-----GEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKAKKKE 647
            G L  + +G+ ++     K   VQA ++    W        L+L  KNG   + DGF  +E E++ + F+++Y L L  + L   G N+G + F    L   + D+PV E+PL  VSQC    TG  KNEV L+F + D A   E +L+EVRFY+PP +E+  D  EAF +NVL++  V  +TGDA+  F E +   L PRGRY I +Y     LHG  +D+K+ Y  ++  FLL   D R  F VI L  PI+QGQ RY++L+L  + D    +T+NM+EEE+ +++E RL + M+G ++ +V++  K L  +K+     FQ     + + CS KAS GLLYPL++ F++++KP ++I F +I  V+F R       TR+FD  +  +        +Y F+ IE+EE+  L  ++  K+  IK            +R L+E++EG      E  D ++++ ++Y  E    EG   E +    SDD  SG E  E  +  E      E+             G+   EE++ ++       K RK +K K   GKK     KDPNAPK+ +SAYML+  ASRE +K++ PG+ +T++SK  GE W+ +S E+K+ ++ +A  A+  Y + ++ Y+  + E
Sbjct:   21 GRLRLSRQGIMFKNSKTGKVDNVQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFRTHYRLDLMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCT---TG--KNEVTLEFHQNDDA---EVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQC--LTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMSEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQ-----GTQYTFSSIEREEYGKLFDFVNAKKLNIK------------NRGLKEKKEGMNPSYDEYADSDEDQHDAYL-ERMKEEGKIREENANDSSDD--SGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDREEKKRKQLKRAKMAKDRKSRK-KTVEGKK----GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGE 623          
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|731275194|ref|XP_010606629.1| (PREDICTED: FACT complex subunit SSRP1 isoform X3 [Fukomys damarensis])

HSP 1 Score: 330.487 bits (846), Expect = 8.794e-101
Identity = 216/649 (33.28%), Postives = 348/649 (53.62%), Query Frame = 0
Query:   18 GTLTFTGKGLEWRGPSNAKT--VQAKDILRASWSVFGKWGHLRLFLKNGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEED-DGAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRWAF-VIGLKKPIRQGQQRYNYLVLQ-THDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKG-GKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAK------KDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKAKKKEEAAESGG 654
            G L  + +G+ ++     K   VQA ++    W        L+L  KNG   + DGF  +E E++ + F+++Y L L  + L   G N+G + F    L   + D+PV E+PL  VSQC    TG  KNEV L+F + D A   E +L+EVRFY+PP +E+  D  EAF +NVL++  V  +TGDA+  F E +   L PRGRY I +Y     LHG  +D+K+ Y  ++  FLL   D R  F VI L  PI+QGQ RY++L+L  + D    +T+NM EEE+ +++E RL + M+G ++ +V++  K L  +K+     FQ     + + CS KAS GLLYPL++ F++++KP ++I F +I  V+F R       TR+FD  +     +     +Y F+ IE+EE+  L  ++  K+    I ++ + + K       ++    +ED+ D   E  K E    E + ++ SE+ G           EE+D     G ++E  ++          S  EG  + EE+        K+++ K+ K    +K +R        KDPNAPK+ +SAYML+  ASRE +K++ PG+ +T++SK  GE W+ +S E+K+ ++ +A  A+  Y + ++ Y+  + E +   GG
Sbjct:   21 GRLRLSRQGIIFKNSKTGKVDNVQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELLEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCT---TG--KNEVTLEFHQNDDA---EVSLMEVRFYVPPTQEDGIDPVEAFAQNVLSKADVIQATGDAICIFRELQC--LTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEIAFVNFAR---GTTTTRSFDFEI-----ETKQGTQYTFSSIEREEYGKLFDFVNAKKL--NIKNRGLKEKKEGMNPSYDDYADSDEDQHDAYLERMKEEGKIREENANDSSEDSG-----------EETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDREEK--------KRKQLKRAKVAKDRKSRRKTVEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGEPSKRCGG 630          
The following BLAST results are available for this feature:
BLAST of EWM23164.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104045|gb|EWM23164.1|0.000e+0100.00fact complex subunit ssrp1 [Nannochloropsis gadita... [more]
gi|298706803|emb|CBJ29726.1|4.724e-13839.66conserved unknown protein [Ectocarpus siliculosus][more]
gi|224002190|ref|XP_002290767.1|3.919e-11837.79structure specific recognition protein 1 [Thalassi... [more]
gi|397631195|gb|EJK70063.1|7.112e-11837.39hypothetical protein THAOC_08612 [Thalassiosira oc... [more]
gi|1210519476|dbj|GAX21600.1|6.454e-10639.26structure-specific recognition protein 1 [Fistulif... [more]
gi|1210526340|dbj|GAX14828.1|1.364e-10539.67structure-specific recognition protein 1 [Fistulif... [more]
gi|641771800|ref|XP_008169898.1|1.568e-10234.02PREDICTED: FACT complex subunit SSRP1 isoform X1 [... [more]
gi|641771802|ref|XP_008169899.1|5.878e-10234.29PREDICTED: FACT complex subunit SSRP1 isoform X2 [... [more]
gi|918645292|ref|XP_013361928.1|3.947e-10134.48PREDICTED: FACT complex subunit SSRP1 isoform X1 [... [more]
gi|731275194|ref|XP_010606629.1|8.794e-10133.28PREDICTED: FACT complex subunit SSRP1 isoform X3 [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7556rna7556Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications