EWM23164.1, cds7538 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|585104045|gb|EWM23164.1| (fact complex subunit ssrp1 [Nannochloropsis gaditana]) HSP 1 Score: 1345.49 bits (3481), Expect = 0.000e+0 Identity = 661/661 (100.00%), Postives = 661/661 (100.00%), Query Frame = 0
Query: 1 MATIEKFENIGLSGQSVGTLTFTGKGLEWRGPSNAKTVQAKDILRASWSVFGKWGHLRLFLKNGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDDGAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRWAFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKAKKKEEAAESGGRAVREWG 661
MATIEKFENIGLSGQSVGTLTFTGKGLEWRGPSNAKTVQAKDILRASWSVFGKWGHLRLFLKNGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDDGAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRWAFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKAKKKEEAAESGGRAVREWG
Sbjct: 1 MATIEKFENIGLSGQSVGTLTFTGKGLEWRGPSNAKTVQAKDILRASWSVFGKWGHLRLFLKNGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDDGAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRWAFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKAKKKEEAAESGGRAVREWG 661
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|298706803|emb|CBJ29726.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 427.557 bits (1098), Expect = 4.724e-138 Identity = 257/648 (39.66%), Postives = 378/648 (58.33%), Query Frame = 0
Query: 7 FENIGLSGQSVGTLTFTGKGLEWRG--PSNAKTVQAKDILRASWSVFGKWGHLRLFLK-NGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDD---GAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRW-AFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGA--VGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKAKK 645
F IG+ G S+G L T + L W S++K V+ D+ A+W+ + + HLRLF+K + + +R DGF + + + E F S +SL E N GG NYGD+ DN + S +K + +L + VSQCV+PG N+VELQ E+DA D+ EDTLV +R +P +E+ D AE+ Q V+ R + G LV F E +G F +PRGRY + +Y++ R+HG++YD+K+ Y+DI FLLE+PD R+ AFVI L KPIRQGQQ+Y +LVL+T + +TVNM+ E+L++KY+ L M GP+H+L+AK FK+LS K VY + +F S + VKC+L A+EG LYPL+K+F+FI+KPT I F +IESV F R GGA GVTR FDL V + + G+ + Y+F+ I++ E+++L +L K+ +I + E + + + ++ + YK +G E ++ + G E S + +++ K KK+ GS ++G + KKR + P KKKRAKKD +APK A+SA+M F+QA+R VK + P LKVTEISKV+GE+W L +KK ++D+A K RY E AY +KK
Sbjct: 3 FSKIGVQGYSLGNLQLTAEELNWTSDDKSSSKKVKWLDVSHATWAQYAAYCHLRLFMKRDARPVRLDGFSKAQHADI-EKFLSERDVSLSNESPNPGGGNYGDIEVLDNIVRFSSGNKTLFDLNIKDVSQCVMPGVKK-SNDVELQLHESDATDQTEDTLVAIRVTLPEKDEDTDERSPAESLQMAVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTKDEATITVNMSAEDLQKKYDSNLNSEMIGPLHNLIAKIFKVLSNKPVYVTGKFSSTNGAKAVKCALGANEGYLYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAGVTRNFDLCVAPKSVAGETPKPYVFSGIDRSEYSSLYSFLSTKKL------------RIKNIKESGNDNAMLQLGDLDDHDPYKAALDDDQGEDEESEDDADYAPDARGGSDAESSSDSDGDEDSDDRAHKTSKKRPGTGSAKKGPTQ------------KKRASGGGSSKPAPKKKRAKKDKDAPKGAMSAFMQFSQANRAQVKTDNPELKVTEISKVLGEKWGKLDETQKKPYQDKADEDKARYKRERDAYDSKK 624
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|224002190|ref|XP_002290767.1| (structure specific recognition protein 1 [Thalassiosira pseudonana CCMP1335] >gi|220974189|gb|EED92519.1| structure specific recognition protein 1 [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 379.793 bits (974), Expect = 3.919e-118 Identity = 246/651 (37.79%), Postives = 359/651 (55.15%), Query Frame = 0
Query: 36 KTVQAKDILRASWSVFGKWGHLRLFLKN--------GKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDD-------GAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDH-RWAFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLL--RPLDGDVRREYIFAQIEKEEHANLSQYLRDKQT-IKVID----DKPVSQAKIDRMLEEEEEGGEE--EDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEE-------MTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKAKKKEEAAESGG 654
+T+ I A W++FGK GHLR+ K ALR DGF ++ +R+ E FQ+ Y ++L+R ++S GA++G+ + L + + +L L LG VSQCVLPG N +NE+E+QF+E+D + D LV +RFY+PP ++ D AE Q + +V+ ++G + F E++G FL PRGRY I LY + RL GAKYD+K+ YDDI FLL + D AFVI L KPIRQGQQRYN LV+Q SE+ +N+ + + ++Y ++ M G +LVAKTFK+++ KKV+ +F +A VKC+L+A+EG LYPL+K F+FI+KP + I F +IESV F R G G TR FDL V L P D +EY F+ I+K +A+L +L K+ IK I+ ++P A M E +EGGEE E EDE+ + K ES S + ++ GS M ++SDL E + K K K KK +KGS + E+++++ D PNAPK+ LSA+ FT A R +KA P E++K++G ++ LSA EK +E+ AA+ K RY +E+ +Y +++ ES G
Sbjct: 11 RTLPQNAIAGALWTIFGKSGHLRVLTKTLEGSKTKLPAALRFDGFPPSDFDRLTEAFQTMYGITLKRHSMSSAGASWGNTDIANKHLFEPRDGEEMLSLDLGEVSQCVLPG--NNRNEIEMQFLESDTVEAGTDQLVAIRFYVPPDQDADPTDKDAPTSAELLQSRITEVASVKKTSGAIIAEFDENKGTFLTPRGRYSIELYDSFLRLRGAKYDYKIKYDDISRLFLLPKQDDMHMAFVIALDKPIRQGQQRYNMLVMQCTKEQSELNINLDDATIEKEYNGEIQAHMNGSFSNLVAKTFKVITKKKVFIPGKFANANQQACVKCALRANEGHLYPLEKQFIFIHKPAVLIRFDEIESVEFQRYAGGQGSTRNFDLSVSLINTPGDNLAVKEYTFSGIDKTNYASLYSFLSQKKIRIKNIEGIGSEEPARSAP---MYNEMDEGGEEMGESSEDEDYDQAKASESEESSSDEDDDDDLGS--------MSDDSDLAEHRKKAAKKSKDKSSKKEKPSKKSADKGSNKRKEPEKKKKQKD---------------------------PNAPKRGLSAFNFFTSAKRGDIKAANPDASFAELAKLVGAEFKGLSASEKAKYEELAANDKKRYEKEMESYVPPEEDSDDESDG 621
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|397631195|gb|EJK70063.1| (hypothetical protein THAOC_08612 [Thalassiosira oceanica]) HSP 1 Score: 380.563 bits (976), Expect = 7.112e-118 Identity = 252/674 (37.39%), Postives = 369/674 (54.75%), Query Frame = 0
Query: 7 FENIGLSGQSVGTLTFTGKGLEWRGP-------SNAKTVQAKDILRASWSVFGKWGHLRLFLKNGK---------ALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVM---SLED--------KP-----VLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDD-------GAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRW-AFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGD--VRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEEL 638
+++IGL G +VGT + T G+ W+ + + + I A W+VFGK GHLR+ K + A+R DGF T+ E + E + + ++L+R ++S G+++G+ + LV +LED +P ++ L LG VSQCVLPG N +NE+E+QF+E+D + D LV +RFY+PP + D AEA Q ++ +V+ ++G + F E +G FL PRGRY I LY + RL GAKYD+K+ YDDI FLL R D AFVI L KPIRQGQQRYN LV+Q SE+ +N+ E L ++Y ++EQ M G +LVAKTFK+++ KKV+ +F ++ VKC+L+A+EG LYPL+K F+FI+KP + I F +IESV F R G G TR FDL V L GD +EY F+ I+K +A L +L K+ IK+ + + V + E ++ G DE +DE + S+ S+ DDS G+ + ++SDL E K KKK E + ++ +K+ KK KA P K+KK+ K+DPNAPK SAY+ FT A R +K P +ISK++G+ ++ LS EK+ +++ A K RY E+
Sbjct: 8 WKHIGLYGHAVGTFSATRHGIMWKSSVMGNDDIETKRVLPRESISGALWTVFGKSGHLRVLTKAPREGEQTKLPAAMRFDGFPGTDYEAMSEALRDLFGVTLKRHSMSSAGSSWGNTDISNKHLVFRQCNLEDADEDGQEFEPRDGDEMMSLDLGEVSQCVLPG--NNRNEIEMQFLESDTVEAGTDQLVALRFYVPPDADADPTDKDAPTSAEALQSRIMQIASVKKTSGSIIAEFDEGKGTFLTPRGRYSIELYDSFLRLRGAKYDYKIKYDDISRLFLLPRQDDMTVAFVIALDKPIRQGQQRYNMLVMQCTKEHSELNINLDEATLEKEYGGQIEQHMNGSFSNLVAKTFKVITRKKVFIPGKFANSNQQACVKCALRANEGHLYPLEKQFIFIHKPAVLIRFDEIESVEFQRYAGGQGSTRNFDLCVSLHSTPGDSASTKEYTFSGIDKSNYAALYSFLSGKK-IKIKNLEGVGE-------EPKKPGAPRYDERMSDDEESDDSDFDENAPKSDDSDSDSDDDSDLGSVVSDDSDLA-------EHRKKSKKKKPAPKKKAEPDSDSSSDDDSDEEEERKKPSKKRKAEPSKQKKK-KRDPNAPKAPKSAYVFFTSAKRSEIKEANPDAGFGDISKLLGKAYKELSDAEKEPYDEMARKDKARYKREM 663
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|1210519476|dbj|GAX21600.1| (structure-specific recognition protein 1 [Fistulifera solaris]) HSP 1 Score: 348.977 bits (894), Expect = 6.454e-106 Identity = 192/489 (39.26%), Postives = 280/489 (57.26%), Query Frame = 0
Query: 7 FENIGLSGQSVGTLTFTGKGLEWRGP-------------SNAKTVQAKDILRASWSVFGKWGHLRLFLKNGKA---LRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYG-------DLIFEDNTLV------MSLEDKP---VLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDD-------GAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDH-RWAFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEE 455
+++IGL G S+GTL+ + + W+G + + + A I A W+VFG+ GHLR+ +++ K LR DGF + + +++ Q Y+++++ ++S G YG L+F L E +P ++ L L VSQCVLPG N +NE+E+QF E+DA + D LV +RFYIPP + D AE Q ++A V+ +TGD + TF +G FL PRGRY + LY RL G KYD+K+ YDDI FLL +PD AFVI L KPIRQGQQRY YLVLQ EVT+ + E+ L ++Y+ L+ M G + +L+AKTFK++SGKKV+ +F ++ VKC+++A+EGLLYPL+K F+FI+KP + I F +IESV F R G G TR FDL V L+ + +EYIF+ I++ ++A L +L KQ P+ + +EE+E
Sbjct: 9 WKHIGLHGHSMGTLSLLKERITWKGALTGGGAADDEYQGTMVRNIPASAIKGAQWTVFGRSGHLRIQIQDEKLPHELRFDGFPAQDVDILKDALQQQYNIAMQLHTMSSAGTQYGLTSVQGKQLLFRHCVLDEMNEEGQEFEPRPEHEMMSLNLAEVSQCVLPG--NNRNEIEVQFPESDAVEAGTDQLVSIRFYIPPDLDADPSDKTAPTAAELLQAKIMATAQVRKTTGDVICTFDAAKGTFLTPRGRYGMELYDRFLRLRGQKYDYKIKYDDINRLFLLPKPDEVHMAFVIALDKPIRQGQQRYQYLVLQAPKDPDEVTIALDEDTLEKEYKGELQPVMRGSLSNLIAKTFKVISGKKVFIPGKFANSNEQACVKCAVRANEGLLYPLEKQFVFIHKPPIIIRFNEIESVEFQRYAGGQGSTRNFDLCVNLKDPEQSSTKEYIFSGIDRSDYAGLYNFLNGKQI-------PIKNLQGSGFMEEDE 488 HSP 2 Score: 68.5514 bits (166), Expect = 2.929e-8 Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 0
Query: 558 AGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKA 643
G KK+ KKDPNAPK++ ++Y+ F R +K E P + E K +GE +RALSA+EKK +E+ A K R +E+ +YK+
Sbjct: 675 TGDATTKKKEKKDPNAPKRSKTSYIFFADEMRVKLKKENPSMTFGETGKKIGEMFRALSADEKKKYEEMAQKDKERARKEMASYKS 760
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|1210526340|dbj|GAX14828.1| (structure-specific recognition protein 1 [Fistulifera solaris]) HSP 1 Score: 347.821 bits (891), Expect = 1.364e-105 Identity = 194/489 (39.67%), Postives = 281/489 (57.46%), Query Frame = 0
Query: 7 FENIGLSGQSVGTLTFTGKGLEWRGP-------------SNAKTVQAKDILRASWSVFGKWGHLRLFLKNGKA---LRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYG-------DLIFEDNTLV------MSLEDKP---VLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDD-------GAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDH-RWAFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEE 455
+++IGL G S+GTL+ T + + W+G + + + A I A W+VFG+ GHLR+ +++ K LR DGF + + +++ Q Y+++++ ++S G YG L+F L E +P ++ L L VSQCVLPG N +NE+E+QF E+DA + D LV +RFYIPP + D AE Q ++A V+ +TGD + TF +G FL PRGRY + LY RL G KYD+K+ YDDI FLL +PD AFVI L KPIRQGQQRY YLVLQ EVT+ + EE L ++Y+ L+ M G + +L+AKTFK++SGKKV+ +F ++ VKC+++A+EGLLYPL+K F+FI+KP + I F +IESV F R G G TR FDL V L+ + +EYIF+ I++ ++A L +L KQ P+ + +EE+E
Sbjct: 8 WKHIGLHGHSMGTLSLTKERITWKGALTGGGTADDDFQGTMVRNIPALSIKGAQWTVFGRSGHLRIQIQDDKLPHELRFDGFPAQDIDILKDALQQQYNIAMQLHPMSSAGTQYGLTSVKGKQLVFRHCVLDEINEEGQEFEPRPEHEMMSLNLAEVSQCVLPG--NNRNEIEVQFPESDAVEAGTDQLVSIRFYIPPDLDADPSDKTAPTAAELLQAKIMATAQVRKTTGDVICTFDAAKGTFLTPRGRYGMELYDRFLRLRGQKYDYKIKYDDINRLFLLPKPDEVHMAFVIALDKPIRQGQQRYQYLVLQAPKDPDEVTIALDEETLEKEYKGELQPVMRGSLSNLIAKTFKVISGKKVFIPGKFANSNEQACVKCAVRANEGLLYPLEKQFVFIHKPPIIIRFNEIESVEFQRYAGGQGSTRNFDLCVNLKDPEQST-KEYIFSGIDRSDYAGLYNFLNGKQI-------PIKNLQGSGFMEEDE 486
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|641771800|ref|XP_008169898.1| (PREDICTED: FACT complex subunit SSRP1 isoform X1 [Chrysemys picta bellii]) HSP 1 Score: 337.035 bits (863), Expect = 1.568e-102 Identity = 214/629 (34.02%), Postives = 337/629 (53.58%), Query Frame = 0
Query: 18 GTLTFTGKGLEWRGPSNAKT--VQAKDILRASWSVFGKWGHLRLFLKNGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEED-DGAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRWAF-VIGLKKPIRQGQQRYNYLVLQ-THDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAY 641
G L + +G+ ++ K +QA ++ W L+L KNG + DGF +E +++ E F+S+Y L L + L G N+G + F L + ++PV E+PL VSQC TG KNEV L+F + D A E +L+EVRFY+PP +E+ D EAF +NVL++ V +TGDA+ F E + L PRGRY I +Y LHG +D+K+ Y ++ FLL D R F VI L PI+QGQ RY++L+L + D +T+NM E+E+ +++E RL + M+G ++ +V++ K L +K+ FQ + + CS KAS GLLYPL++ F++++KP ++I F +I V+F R TR+FD + + +Y F+ IE+EE+ L ++ K+ I ++ + K +E +ED+ D E K E E + + S+E G + S E+ D+ E + SS GG + EE+ K K +K + P + KK KDPNAPK+ +SAYML+ ASRE +K++ PG+ +T++SK GE W+ +S E+K+ ++ +A AK Y + ++ Y
Sbjct: 21 GRLRLSRQGVIFKNSKTGKVDNIQASELAEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFDKLSEFFKSHYRLELAEKDLCVKGWNWGTVKFGGQLLSFDIGEQPVFEIPLSNVSQCT---TG--KNEVTLEFHQNDDA---EVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQC--LTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEDEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEI-----ETKQGTQYTFSSIEREEYGKLFDFVNAKKL--NIKNRGHKEKKKSMPQSYDEYADSDEDQHDAYLERMKEEGKIREENADDSSDESGEETDESFNPGEEDEDVAEEFDSEVSASSDGGSDR--------------EEKRKPAKKAKIVKERKPRKKPSESKK--GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGELWKGMSKEKKEEWDRKAEDAKRDYEKAMKEY 613
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|641771802|ref|XP_008169899.1| (PREDICTED: FACT complex subunit SSRP1 isoform X2 [Chrysemys picta bellii]) HSP 1 Score: 335.495 bits (859), Expect = 5.878e-102 Identity = 216/630 (34.29%), Postives = 335/630 (53.17%), Query Frame = 0
Query: 18 GTLTFTGKGLEWRGPSNAKT--VQAKDILRASWSVFGKWGHLRLFLKNGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEED-DGAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRWAF-VIGLKKPIRQGQQRYNYLVLQ-THDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQ-TIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAY 641
G L + +G+ ++ K +QA ++ W L+L KNG + DGF +E +++ E F+S+Y L L + L G N+G + F L + ++PV E+PL VSQC TG KNEV L+F + D A E +L+EVRFY+PP +E+ D EAF +NVL++ V +TGDA+ F E + L PRGRY I +Y LHG +D+K+ Y ++ FLL D R F VI L PI+QGQ RY++L+L + D +T+NM E+E+ +++E RL + M+G ++ +V++ K L +K+ FQ + + CS KAS GLLYPL++ F++++KP ++I F +I V+F R TR+FD + + +Y F+ IE+EE+ L ++ K+ IK K D E +ED+ D E K E E + + S+E G + S E+ D+ E + SS GG + EE+ K K +K + P + KK KDPNAPK+ +SAYML+ ASRE +K++ PG+ +T++SK GE W+ +S E+K+ ++ +A AK Y + ++ Y
Sbjct: 21 GRLRLSRQGVIFKNSKTGKVDNIQASELAEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFDKLSEFFKSHYRLELAEKDLCVKGWNWGTVKFGGQLLSFDIGEQPVFEIPLSNVSQCT---TG--KNEVTLEFHQNDDA---EVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQC--LTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEDEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEI-----ETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGHKESMPQSYD------EYADSDEDQHDAYLERMKEEGKIREENADDSSDESGEETDESFNPGEEDEDVAEEFDSEVSASSDGGSDR--------------EEKRKPAKKAKIVKERKPRKKPSESKK--GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGELWKGMSKEKKEEWDRKAEDAKRDYEKAMKEY 610
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|918645292|ref|XP_013361928.1| (PREDICTED: FACT complex subunit SSRP1 isoform X1 [Chinchilla lanigera] >gi|918645294|ref|XP_013361929.1| PREDICTED: FACT complex subunit SSRP1 isoform X1 [Chinchilla lanigera] >gi|918645296|ref|XP_013361930.1| PREDICTED: FACT complex subunit SSRP1 isoform X1 [Chinchilla lanigera]) HSP 1 Score: 333.569 bits (854), Expect = 3.947e-101 Identity = 221/641 (34.48%), Postives = 347/641 (54.13%), Query Frame = 0
Query: 18 GTLTFTGKGLEWRGPSNAKT--VQAKDILRASWSVFGKWGHLRLFLKNGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEED-DGAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRWAF-VIGLKKPIRQGQQRYNYLVLQ-THDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQ-TIKVIDDKPVSQAKIDRMLEEEEEG-----GEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKGGKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAKKDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKAKKKE 647
G L + +G+ ++ K VQA ++ W L+L KNG + DGF +E E++ + F+++Y L L + L G N+G + F L + D+PV E+PL VSQC TG KNEV L+F + D A E +L+EVRFY+PP +E+ D EAF +NVL++ V +TGDA+ F E + L PRGRY I +Y LHG +D+K+ Y ++ FLL D R F VI L PI+QGQ RY++L+L + D +T+NM+EEE+ +++E RL + M+G ++ +V++ K L +K+ FQ + + CS KAS GLLYPL++ F++++KP ++I F +I V+F R TR+FD + + +Y F+ IE+EE+ L ++ K+ IK +R L+E++EG E D ++++ ++Y E EG E + SDD SG E E + E E+ G+ EE++ ++ K RK +K K GKK KDPNAPK+ +SAYML+ ASRE +K++ PG+ +T++SK GE W+ +S E+K+ ++ +A A+ Y + ++ Y+ + E
Sbjct: 21 GRLRLSRQGIMFKNSKTGKVDNVQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFRTHYRLDLMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCT---TG--KNEVTLEFHQNDDA---EVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQC--LTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMSEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFAR---GTTTTRSFDFEIETKQ-----GTQYTFSSIEREEYGKLFDFVNAKKLNIK------------NRGLKEKKEGMNPSYDEYADSDEDQHDAYL-ERMKEEGKIREENANDSSDD--SGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDREEKKRKQLKRAKMAKDRKSRK-KTVEGKK----GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGE 623
BLAST of EWM23164.1 vs. NCBI_GenBank
Match: gi|731275194|ref|XP_010606629.1| (PREDICTED: FACT complex subunit SSRP1 isoform X3 [Fukomys damarensis]) HSP 1 Score: 330.487 bits (846), Expect = 8.794e-101 Identity = 216/649 (33.28%), Postives = 348/649 (53.62%), Query Frame = 0
Query: 18 GTLTFTGKGLEWRGPSNAKT--VQAKDILRASWSVFGKWGHLRLFLKNGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEED-DGAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRWAF-VIGLKKPIRQGQQRYNYLVLQ-THDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRMLEEEEEGGEEEDEEDEEDESYKGEESGSEGSGSEGSEEGGSDDSSSGAEMVEESDLEEMTGIKKEKSSKG-GKKKKEKGSGEEGSEEEEEEESDAGTGGKKRKGKKEKAGPGKKKKRAK------KDPNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYKAKKKEEAAESGG 654
G L + +G+ ++ K VQA ++ W L+L KNG + DGF +E E++ + F+++Y L L + L G N+G + F L + D+PV E+PL VSQC TG KNEV L+F + D A E +L+EVRFY+PP +E+ D EAF +NVL++ V +TGDA+ F E + L PRGRY I +Y LHG +D+K+ Y ++ FLL D R F VI L PI+QGQ RY++L+L + D +T+NM EEE+ +++E RL + M+G ++ +V++ K L +K+ FQ + + CS KAS GLLYPL++ F++++KP ++I F +I V+F R TR+FD + + +Y F+ IE+EE+ L ++ K+ I ++ + + K ++ +ED+ D E K E E + ++ SE+ G EE+D G ++E ++ S EG + EE+ K+++ K+ K +K +R KDPNAPK+ +SAYML+ ASRE +K++ PG+ +T++SK GE W+ +S E+K+ ++ +A A+ Y + ++ Y+ + E + GG
Sbjct: 21 GRLRLSRQGIIFKNSKTGKVDNVQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELLEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCT---TG--KNEVTLEFHQNDDA---EVSLMEVRFYVPPTQEDGIDPVEAFAQNVLSKADVIQATGDAICIFRELQC--LTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEIAFVNFAR---GTTTTRSFDFEI-----ETKQGTQYTFSSIEREEYGKLFDFVNAKKL--NIKNRGLKEKKEGMNPSYDDYADSDEDQHDAYLERMKEEGKIREENANDSSEDSG-----------EETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDREEK--------KRKQLKRAKVAKDRKSRRKTVEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGEPSKRCGG 630 The following BLAST results are available for this feature:
BLAST of EWM23164.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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