EWM23168.1, cds7535 (CDS) Nannochloropsis gaditana

Overview
NameEWM23168.1
Unique Namecds7535
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:226496..230071 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23168.1
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100043g43.7251.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:226496..230071 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0007155cell adhesion
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002159CD36
Homology
BLAST of EWM23168.1 vs. NCBI_GenBank
Match: gi|585104049|gb|EWM23168.1| (uncharacterized protein Naga_100043g43 [Nannochloropsis gaditana])

HSP 1 Score: 2467.96 bits (6395), Expect = 0.000e+0
Identity = 1191/1191 (100.00%), Postives = 1191/1191 (100.00%), Query Frame = 0
Query:    1 MMEPEKTESCGSLQSVSPSTVLIDSARPSSTSRGTRPADPPIEGPPATTPRGKGKTSSKSRRNIDVERGRLRSRSNSRSPPPPPSSNGSDRSDRSLRSVRSDRSQRSERSERSARGERRDRKYRADRRERSSRGDRGDKKGGRDRKGQDDLYYGDSHRTASMRSSGSERSAKSTNSIVSASSSRPLQDSNTLRSHHQDNLGRTERHRSRSSSHTRRTGSMGQEEWAARVSMDTVPPRRSLVRSWLQTAWASRQCRRGFGLFVAGLLLMALAGVVDIEGNAYRHAKIREAIVVDAPNHPEFKAWATGAQQKTPLFYTYHLYNITNPEEFLAGQPPQVHEVGPFSFQQRTKKINVTFSDEGRLVSYITQIQHEFTGDPEELDRQSVYSLNLPYSVAIYTAGSESNLLKIGSQQGLAEVLFQMKTYFLPALKENAVVMAIQMAVDAMTQILNAMQAPSEATATRWGGGCTSNMFGKICGFSTVATFFSAVDKRNKMDLNLLQLCINTKLTEAEQIPLATVRRLWDPTDVYSIMNVDRGSAAERYGISYWLWGDVDVRDTIAMHFGITIRQYNALRAYLLDIYRSPMLEMAVVKIFLESLPPEDAGTAEVAQWSDFLWRQWAVGDVVTRLKNESMARPESMQPELPPEFAWYAEKAGYKTFTYGGKRLNRTQAKCTFDLAKRPMVYFQTYVLGLPGPSISRPTFVDFGLEDSGEPLIDPRDCFQSKNDWALLQGYLAYLAEYFVAPLLQEDVLDKNGGLVTRKTLRECLYGYSAPILQLSLAKDDPRAMKFSLLANDPSLDGPGRCLSSNDVENPFTACRFSSRNITQNMDGSEQVARIFDKVPNTYHTGRDDTVRAGAFYTYRGDRSIADIWPGGSIPFAGGTKDLPGSIQYGYSDGMQFPPFGAIDGPNVVLSVFVPGFVLPLRFAFSEDVDVQGVKLKRFRLVPETFSSSRSDAKTFGMDKVQQEGLFNLTGLMTGLTYFSKPHYRPTPPFDMSDVGGLAGFDPARDDSYIDVEPVTGKTMNANIQLQLNAGITPEAFDKFHNSVYPVKALPVLHVAQHAGIVPEDAKFFKNMVYGTEKLIKLTTIISASVGALLLLIGLALLLHHALRHGAAVAAAELGLENNSLKGVSSKEATAVEEGDVEMAITKRVRASSSYLSTGTPPDAAGMTTLSATSAKNLTPPRKPPSKRGEF 1191
            MMEPEKTESCGSLQSVSPSTVLIDSARPSSTSRGTRPADPPIEGPPATTPRGKGKTSSKSRRNIDVERGRLRSRSNSRSPPPPPSSNGSDRSDRSLRSVRSDRSQRSERSERSARGERRDRKYRADRRERSSRGDRGDKKGGRDRKGQDDLYYGDSHRTASMRSSGSERSAKSTNSIVSASSSRPLQDSNTLRSHHQDNLGRTERHRSRSSSHTRRTGSMGQEEWAARVSMDTVPPRRSLVRSWLQTAWASRQCRRGFGLFVAGLLLMALAGVVDIEGNAYRHAKIREAIVVDAPNHPEFKAWATGAQQKTPLFYTYHLYNITNPEEFLAGQPPQVHEVGPFSFQQRTKKINVTFSDEGRLVSYITQIQHEFTGDPEELDRQSVYSLNLPYSVAIYTAGSESNLLKIGSQQGLAEVLFQMKTYFLPALKENAVVMAIQMAVDAMTQILNAMQAPSEATATRWGGGCTSNMFGKICGFSTVATFFSAVDKRNKMDLNLLQLCINTKLTEAEQIPLATVRRLWDPTDVYSIMNVDRGSAAERYGISYWLWGDVDVRDTIAMHFGITIRQYNALRAYLLDIYRSPMLEMAVVKIFLESLPPEDAGTAEVAQWSDFLWRQWAVGDVVTRLKNESMARPESMQPELPPEFAWYAEKAGYKTFTYGGKRLNRTQAKCTFDLAKRPMVYFQTYVLGLPGPSISRPTFVDFGLEDSGEPLIDPRDCFQSKNDWALLQGYLAYLAEYFVAPLLQEDVLDKNGGLVTRKTLRECLYGYSAPILQLSLAKDDPRAMKFSLLANDPSLDGPGRCLSSNDVENPFTACRFSSRNITQNMDGSEQVARIFDKVPNTYHTGRDDTVRAGAFYTYRGDRSIADIWPGGSIPFAGGTKDLPGSIQYGYSDGMQFPPFGAIDGPNVVLSVFVPGFVLPLRFAFSEDVDVQGVKLKRFRLVPETFSSSRSDAKTFGMDKVQQEGLFNLTGLMTGLTYFSKPHYRPTPPFDMSDVGGLAGFDPARDDSYIDVEPVTGKTMNANIQLQLNAGITPEAFDKFHNSVYPVKALPVLHVAQHAGIVPEDAKFFKNMVYGTEKLIKLTTIISASVGALLLLIGLALLLHHALRHGAAVAAAELGLENNSLKGVSSKEATAVEEGDVEMAITKRVRASSSYLSTGTPPDAAGMTTLSATSAKNLTPPRKPPSKRGEF
Sbjct:    1 MMEPEKTESCGSLQSVSPSTVLIDSARPSSTSRGTRPADPPIEGPPATTPRGKGKTSSKSRRNIDVERGRLRSRSNSRSPPPPPSSNGSDRSDRSLRSVRSDRSQRSERSERSARGERRDRKYRADRRERSSRGDRGDKKGGRDRKGQDDLYYGDSHRTASMRSSGSERSAKSTNSIVSASSSRPLQDSNTLRSHHQDNLGRTERHRSRSSSHTRRTGSMGQEEWAARVSMDTVPPRRSLVRSWLQTAWASRQCRRGFGLFVAGLLLMALAGVVDIEGNAYRHAKIREAIVVDAPNHPEFKAWATGAQQKTPLFYTYHLYNITNPEEFLAGQPPQVHEVGPFSFQQRTKKINVTFSDEGRLVSYITQIQHEFTGDPEELDRQSVYSLNLPYSVAIYTAGSESNLLKIGSQQGLAEVLFQMKTYFLPALKENAVVMAIQMAVDAMTQILNAMQAPSEATATRWGGGCTSNMFGKICGFSTVATFFSAVDKRNKMDLNLLQLCINTKLTEAEQIPLATVRRLWDPTDVYSIMNVDRGSAAERYGISYWLWGDVDVRDTIAMHFGITIRQYNALRAYLLDIYRSPMLEMAVVKIFLESLPPEDAGTAEVAQWSDFLWRQWAVGDVVTRLKNESMARPESMQPELPPEFAWYAEKAGYKTFTYGGKRLNRTQAKCTFDLAKRPMVYFQTYVLGLPGPSISRPTFVDFGLEDSGEPLIDPRDCFQSKNDWALLQGYLAYLAEYFVAPLLQEDVLDKNGGLVTRKTLRECLYGYSAPILQLSLAKDDPRAMKFSLLANDPSLDGPGRCLSSNDVENPFTACRFSSRNITQNMDGSEQVARIFDKVPNTYHTGRDDTVRAGAFYTYRGDRSIADIWPGGSIPFAGGTKDLPGSIQYGYSDGMQFPPFGAIDGPNVVLSVFVPGFVLPLRFAFSEDVDVQGVKLKRFRLVPETFSSSRSDAKTFGMDKVQQEGLFNLTGLMTGLTYFSKPHYRPTPPFDMSDVGGLAGFDPARDDSYIDVEPVTGKTMNANIQLQLNAGITPEAFDKFHNSVYPVKALPVLHVAQHAGIVPEDAKFFKNMVYGTEKLIKLTTIISASVGALLLLIGLALLLHHALRHGAAVAAAELGLENNSLKGVSSKEATAVEEGDVEMAITKRVRASSSYLSTGTPPDAAGMTTLSATSAKNLTPPRKPPSKRGEF 1191          
BLAST of EWM23168.1 vs. NCBI_GenBank
Match: gi|585106443|gb|EWM24843.1| (CD36 antigen [Nannochloropsis gaditana])

HSP 1 Score: 266.544 bits (680), Expect = 1.871e-73
Identity = 189/577 (32.76%), Postives = 273/577 (47.31%), Query Frame = 0
Query:  614 WRQWAVGDVVTRLKNESMARPESMQPELPPEFAWYAEKAGYKTFTYGG--------------KRLNRTQAKCTFDLAKRPMV--YFQTYVLGLPGPS---ISRPTFVDFGLEDSGEPLIDP---RDCFQSKNDWALLQGYLAYLAEYFVAPLLQEDVLDKNGGLVTRKTLRECLYGYSAPILQLSLAKDDPRAMKFSLLANDPSLDGPGRCLSSNDVENPFTACRFSSRNITQNMDGSEQVARIFDKVPNTYHTGRDDTVRAGAFYTYRGDRSIADIWPGGSIPFAGGTKDLPGS-IQYGYSDGMQFPPFG-------AIDGPNVV-----------------------------------LSVFVPGFVLPLRFAF-SEDVDVQGVK-LKRFRLVPETFSSSRSDAKTFGMDKVQ-QEGLFNLTGLMTGLTYFSKPHYRPTPPFD----MSDVGGL-AGFDPARDDSYIDVEPVTGKTMNANIQLQLNAGITPEA--FDKFHNSVYPVKALPVLHVAQHAGIVPEDAKFFKNMVYG-------TEKLIKLTTIISASVGALLLLIGLALLLHHALR 1108
            WRQWAVGDV+      ++  PES+ PE PPE ++Y    G   +T  G               R +  Q KC  DL  R     +F   VLGLP PS    SR TF+D     +  P         C  S+  W+++ GY  YL   F  P L+E V++ NGGL+  ++++  L G   PIL  SL  +DPR + F ++  D  ++ PG+C+  +D+EN ++AC      +T   D +  +   + KV NTYHTG+    R GA   Y+GD     IWP G IP  GG +   GS +QYGYS+G QFPP         A  GP +V                                   + VF+  FVLP+RF +      +QG+  L RF L P  FS  R DA  + MD  + +EGL N+T +     + S PHY   P       +S V  +  G   A   S++D+EP TG+T++A++ LQ+++     A  +D FH   Y  + +P+L +   A + PEDA  F+ +V          ++L  L  I++A VG  L L+G   L   + R
Sbjct:   19 WRQWAVGDVLQTFSGAAL--PESVLPETPPELSFYMAAVGKPVWTPVGIVVGENEVPPPISPARWSLKQTKCMRDLILRETDADFFAETVLGLP-PSPTQTSRKTFLDVESAMARSPEASKAALEQCLVSQGAWSVMLGYFDYLGRTFAGPHLREHVVEANGGLIVTRSVQSWLEGRPEPILSSSLPPNDPR-IWFGIMTEDEKMEAPGKCVQVSDIENMYSAC----SPVTAPTDPTTLL--YYKKVANTYHTGKKHPDRLGAMAKYKGDDVAWGIWPRGKIPILGGAEAGQGSVVQYGYSEGEQFPPLNRILRATEAYVGPGLVAGLEKTFNSLAATGNATTTTALAAMTEETVESPTDMLVFMSNFVLPVRFQYRGPRAPIQGLTGLHRFGLSPLNFSPRRRDAALYSMDGPRAREGLLNMTDIKGAPFFLSPPHYLGCPKLQSLECLSAVATIPQGESEAAVGSHLDIEPYTGRTLSASVSLQVSSSTMGAARVYDVFHAETYTAEVVPLLWMTHQAEVGPEDAALFQELVNAPLDFVTKVQRLTLLVGILTAGVGLFLALLGFFCLCRKSGR 585          
BLAST of EWM23168.1 vs. NCBI_GenBank
Match: gi|585106442|gb|EWM24842.1| (scavenger receptor class member 2 [Nannochloropsis gaditana])

HSP 1 Score: 165.236 bits (417), Expect = 2.719e-40
Identity = 86/251 (34.26%), Postives = 141/251 (56.18%), Query Frame = 0
Query:  281 YRHAKIREAIVVDAPNHPEFKAWATGA--------QQKTPLFYTYHLYNITNPEEFLAGQPPQVHEVGPFSFQQRTKKINVTFSDEGRLVSYITQIQHEFTGDPEELDRQ-----SVYSLNLPYSVAIYTAGSESNLLKIGSQQGLAEVLFQMKTYFLPALKENAVVMAIQMAVDAMTQILNAMQAPSEATATRWGGGCTSNMFGKICGFSTVATFFSAVDKRNKMDLNLLQLCINTKL-TEAEQIPLATV 517
            +R  +  E++VVD+P+HP + AW   A        +  +P +  ++ +++ N + FL G+ P   E GP++F+Q  KK++V FS++G LVSY+T +Q++++  PE+  +      +V  LNL Y+ A+ T GSESNLL+ GS++ L E+    ++ FLP LKE AV       +  + + L  +    + TA RWGGGC S    + CGF   A   + + K  K D  L  +C++T L +E  Q+  A +
Sbjct:  176 WRDKRALESLVVDSPDHPNYAAWVNHASPSSAGRGEGDSPTYQRFYFFHLVNSKGFLQGKKPFYLEKGPYTFRQTKKKVDVNFSEKGTLVSYVTLVQNKYS--PEQSGKDVALSDTVTMLNLAYATAVATFGSESNLLRYGSRRALMEIERAWESTFLPTLKERAVAATAVKTLALIDEALTKLNYQEDGTAIRWGGGCASAGMVQQCGFEKAAFLKAMIGKERKEDAELYHMCLDTGLGSEPGQVGRAMI 424          
BLAST of EWM23168.1 vs. NCBI_GenBank
Match: gi|585100954|gb|EWM20971.1| (hypothetical protein Naga_102070g1 [Nannochloropsis gaditana])

HSP 1 Score: 138.658 bits (348), Expect = 8.013e-34
Identity = 71/178 (39.89%), Postives = 103/178 (57.87%), Query Frame = 0
Query:  428 LKENAVVMAIQMAVDAMTQILNAMQAPSEATATRWGGGCT-SNMFGKICGFSTVATFFSAVDKRNKMDLNLLQLCINTKL--TEAEQIPLATVRRLWDPTDVYSIMNVDRG-SAAERYGISYWLWGDVDVRDTIAMHFGITIRQYNALRAYLLDIYRSPMLEMAVVKIFLESLPPEDA 601
            +KE + V A   A+  M + L  ++ P +    RWGGGC    +    CGFS++A   + ++   + D+ L+QLC+ T L       +PL TV+ LW+  D + I N +R     ERYGIS WL  D DVR+ I +HF I + QYNAL+ Y+  +Y SP+LE  V+K FL++L P DA
Sbjct:    1 MKEASAVFAATTAIKMMQENLAKIRYPEDGVTIRWGGGCVPVGLQINHCGFSSIAYLKAVLNAEQQQDIALIQLCLETYLDPMPGRVLPLETVQALWNKDDRFGIFNTERNPETGERYGISLWLKNDPDVREEIMIHFRINMVQYNALQTYISKLYHSPLLEQYVLKTFLKALSPADA 178          
BLAST of EWM23168.1 vs. NCBI_GenBank
Match: gi|585100952|gb|EWM20970.1| (CD36 antigen [Nannochloropsis gaditana])

HSP 1 Score: 142.895 bits (359), Expect = 1.412e-32
Identity = 76/188 (40.43%), Postives = 105/188 (55.85%), Query Frame = 0
Query:  720 QSKNDWALLQGYLAYLAEYFVAPLLQEDVLDKNGGLVTRKTLRECLYGYSAPILQLSLAKDDPRAMKFSLLANDPSL-------DGPGRCLSSNDVENPFTACRFSSRNITQNMDGSEQVARIFDKVPNTYHTGRDDTVRAGAFYTYRGDRSIADIWPGGSIPFAGGTKDLPGSIQYGYSDGMQFPPF 900
            QSK+ W ++QGY+ +LA +FV P+++ DV+  NGGLV  +++   L G   PIL LSL   DPR + FS L  D SL        G G C  SNDVEN  TAC          +D +    R + K P+T+HTG+    R G    + GD  I  +WP  +I    G+++   ++QYG+SDGMQFPP 
Sbjct:    3 QSKDAWGVMQGYIDHLAVHFVKPVVETDVIRSNGGLVVTRSVHSWLTGRREPILALSLDSSDPRVL-FSFLGADLSLTPEGGVEGGHGTCRMSNDVENTVTAC-------APVLDEASGEIREYRKTPSTFHTGKHFPHRIGQLAAHHGDEKIWGVWPRKTIVIQAGSREGGSNVQYGHSDGMQFPPL 182          

HSP 2 Score: 67.3958 bits (163), Expect = 7.643e-8
Identity = 49/116 (42.24%), Postives = 63/116 (54.31%), Query Frame = 0
Query:  910 LSVFVPGFVLPLRFAFSEDVDVQGVKLKRFRLVPETFSSSRSDAKTFGM---DKVQQEGLFNLTGLMTGLTYFSKPHYRPTPPF-DMSDVGGL----AGFDPARDDSYIDVEPVTG 1017
            LSVF+  FVLPL F F E V ++G++L +F L P TFS  R DA  F M    +  +EGLFNLT L T  ++ S P +   P    +  + GL     G   A   SY+ VEP TG
Sbjct:  246 LSVFLSKFVLPLWFRFQETVSLRGIRLLKFNLSPLTFSPQRPDASGFSMLGLGEGGREGLFNLTDLQTMPSFLSPPQFHGYPSLRKLPCLAGLRLSEIGKRQAARGSYLAVEPYTG 361          
BLAST of EWM23168.1 vs. NCBI_GenBank
Match: gi|585110788|gb|EWM28404.1| (cd36-like class b scavenger receptor [Nannochloropsis gaditana])

HSP 1 Score: 140.198 bits (352), Expect = 5.891e-30
Identity = 181/737 (24.56%), Postives = 296/737 (40.16%), Query Frame = 0
Query:  519 RLWDPTDVYSIMNVDRGSAAERYGISYWLW---GDVDVRDTIAMHFGITIRQYNALRAYLLDIYRSPMLEMAVVK-IFLES--LPPEDAGTAEVAQWSDFLWRQWAVGDVVTRLKN-----ESMARP----------ESMQP----ELPP--EFAWYAEKAGYKTFTYGGKRL---------------------NRTQAKCTFDLAKRPMVYFQTYVLGLPG-----------PSISRPTFVDFGLEDS---GEPLIDPRDCFQSKNDWALLQGYLAYLAEYFVAPLLQEDVLDKNGGLVTRKTLRECLYGYSAPILQLSLAKDDPRAMKFSLLAN-DPSLDGP-GRCLSSNDVENPFTACRFSSRNITQNMDGSEQVARIFDKVPNTYHTGRDDTVRAGAFYTYRG-DRSIADIWPGG----------------SIPFAGGTKDL----------------PGSIQYGYSDGMQFPPFGAIDGPN----VVLSVFVPGFVLPLRFAFSEDVDVQGVKLKRFRLVPETFSSSRSDAKTF----GMDKVQQEGLFNLTGLMTGLTYFSK----------PHYRPTPPFDMSDVGGLAGFDPARDDSYIDVEPVTGKTMNANIQLQLNAGITPE---AFDKFHNSVYPVKALPVLHVAQHAGIVPEDAKFFKNMVYGTEKLIKLTTIISASVGALLLLIGLAL----------------LLHHALRHGA---AVAAAEL 1118
            + W+ T  +S++ ++   A  R G+  +     G   +   + +  G+T  Q + + AY++ I  +P +E  V+K + L+    P  DA           + RQ+ + DV+  L       + ++ P          ES+ P    E  P  E  +    A    F      L                     +  + +C FD+      YF+  VLG+P             S+S P  V  G+E+    G  L D         DWA LQ YL ++ +  + PL +  V++ NGGLV+ +T++E   G+  P+L LSL  D P A  +SLL+N +  LD P   C SS DV +    C   +       + S     ++ K P+ Y TG+ D         Y G    +  ++P G                SIP +   +                  P +IQ G+S G QFPPF   D P+     VL +  P   + +RF+++ +    G+ L+RF L  + F  +R D        G   V+Q    N+T L T +  F            P +  + P  +    G+ G       +YIDVEP+TGK+++   Q QL+   +     A+D F++  Y    LP + +     +   DA   +  +Y   K++    + +  VG ++ L+GL +                L  H  RHG    A+AAA++
Sbjct:  307 QFWNETQDFSLVALNTPEAQARRGLLLYTGSPAGRAAIPKEVEVGAGLTDAQVDEVAAYVMRILSAPEVEARVLKAVGLDEAVYPTVDA----------LVMRQFTMADVLGILGGAPEALQGISLPQVNQGNIYVEESLTPGPATEAVPMIELGYILRSAKTHAFLPAPPSLPTWLPPATPRSVAELKAQGWGDVVKGECIFDVLLTNRTYFENAVLGIPAFLLEDDFTHLHASMSSP-LVLGGVEECLAVGPMLGDGTRA--PTPDWADLQTYLNFVGKSSIEPLFRFIVINNNGGLVSTRTVKELALGHQEPLLTLSLGADAPSAF-YSLLSNTEGPLDAPHAFCTSSADVNHALYGCFLDT-------EASTPTKSVYRKTPSRYATGKADISDVQQLQAYAGLTGDVPVMYPSGQRTPVAMPDAVAELASSIPLSTSLRRTQTETFPPPESINASYSPSAIQRGFSTGEQFPPFLLQDLPSPPPLWVLRLKGP---IVIRFSYTNNTKRHGIPLRRFTLSQDLF-EARDDLALIDVGAGELAVRQSTFMNVT-LGTWMPTFMADSPSAGFQFMPAFAASSPQVLEQAKGMEG------TTYIDVEPMTGKSLSRRTQAQLSISTSSPGSGAYDLFYDEAYKGPFLPTVFMVTETFLDKRDASGIRAALYTPGKVVNGIILSAIPVGIIMFLLGLVVLGKEGRADGLYSIGPKLFIHFGRHGTEPPAIAAAQV 1011          

HSP 2 Score: 72.4034 bits (176), Expect = 4.092e-9
Identity = 44/150 (29.33%), Postives = 76/150 (50.67%), Query Frame = 0
Query:  264 GLLLMALAGVVDIEGNAYRHAKIREAIVVDA-PNHPEFKAWATGAQQKTPLFYTYHLYNITNPEEFLAGQPPQVHEVGPFSFQQRTKKINVTFSDEGRLVSYITQ----IQHEFTGDPEELDRQSVYSLNLPYSVAIYTAGSESNLLKIG 408
            GL+++A+AG++          K+R+ +VV +     E   W   +   TP     H YN+TN  +FL G  P    VGPF+++Q  ++ +V F+ +G  V + T     +Q E T      D  ++ S+N  Y+  +    +ESN+++IG
Sbjct:  114 GLVVLAVAGILHKAFPELYKRKLRDKLVVTSMAQAEETVGWLGDSSLHTPTHIGLHFYNLTNAADFLGGALPAFELVGPFTYRQFRRRTDVVFAPDGSYVDFTTNFKAVLQPELTFG--GTDSWNITSINTAYATGVARKLAESNMVRIG 261          
BLAST of EWM23168.1 vs. NCBI_GenBank
Match: gi|1062861738|ref|XP_017947816.1| (PREDICTED: platelet glycoprotein 4 isoform X2 [Xenopus tropicalis])

HSP 1 Score: 83.1889 bits (204), Expect = 5.944e-13
Identity = 71/265 (26.79%), Postives = 109/265 (41.13%), Query Frame = 0
Query:  840 PNTYHTGRDDTVRAGAFYTYRGDRSIADIWPGGSIPFAGGTKDLPGSIQYGYSDGMQFPPFGAIDGPNVVLSVFVPGFVLPLRFAFSEDVDVQGVKLKRFRLVPETFSSS--RSDAKTFGMD-----KVQQEGLFNLTGLMTGL-TYFSKPHYRPTPPFDMSDVGGLAGFDPARDDSYIDVEPVTGKTMNANIQLQLNAGITPEAFDKFHNSVYPVKALPVLHVAQHAGIVPEDAKFFKNMVYGTEKLIKLTTIISASVGALLLL 1096
            P   + G+DD  +      Y+G+RS++  W G +     GT            D   F PF         L  F P     L   F ++ D++G+K+ RF +  E F+SS   SD   F  D         +G+  L         + S PH+     F +  VGGL   +     SYIDVEPVTG  ++   +LQ+N            + +      PVL + + + I  + AK FK +V    + I++  I    VG ++ L
Sbjct:  154 PYNVYNGKDDISKVAVIERYKGERSLS-YWNGDNCNMINGT------------DAFLFSPFNKKKNH---LFFFSPDACRSLYGVFEKEYDLKGIKMNRFVVPKEVFASSAENSDNHCFCKDMKVTRNCTADGILELRACRDRKPIFLSLPHFLHGSQFLLDAVGGLKP-NEYEHRSYIDVEPVTGNALHYAKRLQINVMFQQTNKIDVMSKLQSGFVFPVLWLNETSLITDDAAKDFKAIVINPMRTIEIVAIQFVCVGCIMFL 401          
BLAST of EWM23168.1 vs. NCBI_GenBank
Match: gi|507931414|ref|XP_004676950.1| (PREDICTED: platelet glycoprotein 4 [Condylura cristata] >gi|829999183|ref|XP_012576517.1| PREDICTED: platelet glycoprotein 4 [Condylura cristata])

HSP 1 Score: 82.8037 bits (203), Expect = 1.237e-12
Identity = 89/366 (24.32%), Postives = 147/366 (40.16%), Query Frame = 0
Query:  739 FVAPLLQEDVLDKNGGLVTRKTLRECLYGYSAPILQLSLAKDDPRAMKFSLLANDPSLDGPGRCLSSNDVENPFTACRFSSRNITQNMDGSEQVARIFDKVPNTYHTGRDDTVRAGAFYTYRGDRSIADIWPGGSIPFAGGTKDLPGSIQYGYSDGMQFPPFGAIDGPNVVLSVFVPGFVLPLRFAFSEDVDVQGVKLKRFRLVPETFSS--SRSDAKTFGMDKVQQE-----GLFNLTGLMTGL-TYFSKPHYRPTPPFDMSDVGGLAGFDPARDDSYIDVEPVTGKTMNANIQLQLNAGITPEAFDKFHNSVYPVKALPVLHVAQHAGIVPEDAKFFKNMVYGTEKLIKLTTIISASVGALLLL 1096
            FV  LL   +      L  R+T+RE L+GY  P L L     D                               T   F   N     D ++ V ++F+        G+D+  +     TY+G ++++  W         GT            DG  FPPF  ID     L  F       +   F  ++D++G+ + RF L P+ F+S     D   F  +K+  +     G+ +++    G   Y S PH+    P     + GL   +     +Y+DVEP+TG T+    +LQ+N  + P    +   ++     +P+L + + A I  E A+ F+N V G   L++L  +I  SVG ++ +
Sbjct:  153 FVQVLLNSLIKKSKSALFQRRTVREFLWGYKDPFLSLVPYPIDT------------------------------TVGLFYPYN-----DTADGVYKVFN--------GKDNISKVAIIDTYKGKKTLS-YW-SSYCDLVNGT------------DGASFPPF--IDKSRE-LQFFSSDICRSVYAVFGGEIDLKGIPVFRFVLPPKAFASPVQNPDNHCFCTEKIISKNCTLYGILDISKCKEGKPVYISLPHFLHASPEISIPIEGLHP-NEEEHKTYLDVEPITGFTLQFAKRLQVNLLVKPAKKIEALKNLKHEYIVPILWLNETATIGDEKAEMFRNKVTGKVHLLRLVEMILLSVGVVMFV 457          
BLAST of EWM23168.1 vs. NCBI_GenBank
Match: gi|512830661|ref|XP_002933143.2| (PREDICTED: platelet glycoprotein 4 isoform X1 [Xenopus tropicalis])

HSP 1 Score: 82.8037 bits (203), Expect = 1.478e-12
Identity = 71/265 (26.79%), Postives = 109/265 (41.13%), Query Frame = 0
Query:  840 PNTYHTGRDDTVRAGAFYTYRGDRSIADIWPGGSIPFAGGTKDLPGSIQYGYSDGMQFPPFGAIDGPNVVLSVFVPGFVLPLRFAFSEDVDVQGVKLKRFRLVPETFSSS--RSDAKTFGMD-----KVQQEGLFNLTGLMT-GLTYFSKPHYRPTPPFDMSDVGGLAGFDPARDDSYIDVEPVTGKTMNANIQLQLNAGITPEAFDKFHNSVYPVKALPVLHVAQHAGIVPEDAKFFKNMVYGTEKLIKLTTIISASVGALLLL 1096
            P   + G+DD  +      Y+G+RS++  W G +     GT            D   F PF         L  F P     L   F ++ D++G+K+ RF +  E F+SS   SD   F  D         +G+  L         + S PH+     F +  VGGL   +     SYIDVEPVTG  ++   +LQ+N            + +      PVL + + + I  + AK FK +V    + I++  I    VG ++ L
Sbjct:  213 PYNVYNGKDDISKVAVIERYKGERSLS-YWNGDNCNMINGT------------DAFLFSPFNKKKNH---LFFFSPDACRSLYGVFEKEYDLKGIKMNRFVVPKEVFASSAENSDNHCFCKDMKVTRNCTADGILELRACRDRKPIFLSLPHFLHGSQFLLDAVGGLKP-NEYEHRSYIDVEPVTGNALHYAKRLQINVMFQQTNKIDVMSKLQSGFVFPVLWLNETSLITDDAAKDFKAIVINPMRTIEIVAIQFVCVGCIMFL 460          
BLAST of EWM23168.1 vs. NCBI_GenBank
Match: gi|1101552185|ref|XP_018942014.1| (PREDICTED: platelet glycoprotein 4-like [Cyprinus carpio])

HSP 1 Score: 80.4925 bits (197), Expect = 3.835e-12
Identity = 79/276 (28.62%), Postives = 116/276 (42.03%), Query Frame = 0
Query:  840 PNTYHTGRDDTVRAGAFYTYRGDRSIADIWPGGSIPFAGGTKDLPGSIQYGYSDGMQFPPFGAIDGPNVVLSVFVPGFVLPLRFAFSEDVDVQGVKLKRFRLVPETFSS--SRSDAKTFGMDKV-----QQEGLFNLTGLMTGLTYFSKPHYRPTPPFDMSD-VGGLAGFDPARDDS--YIDVEPVTGKTMNANIQLQLNAGITPEAFDKFHNSVYPVKALPVLHVAQHAGIVPEDAKFFKNMVYGTEKLIKLTTIISASVGALLL---LIGLALL 1102
            P T  TG+DD  +      ++G+ S++  W         GT            DG  F PF     P   L  FV      +   +   VD++G+ + R+ L PE  +S     D + F  D V        GL +LT       Y S PH+     +   D V G+ G +P  D+   ++DVEP+TG TM    +LQLN    P       N +      P+L V + AG+  E A  FK  + G  +L++   I    VG +L    LIGL ++
Sbjct:  135 PYTVFTGKDDINKVATIERWQGETSLS-YWNDSYCNKINGT------------DGSSFHPFLDKKEP---LFFFVSDICRSISAEYEGTVDLKGIDVYRYVLPPEALASPAENPDNQCFCTDPVITKNCTMAGLLDLTACRGAPVYISLPHFL----YGSKDLVQGVIGLNPNFDEHSIFMDVEPITGFTMRFAKRLQLNMLYGPSDSIVILNKIKDYTIFPILWVNETAGLDDETADLFKKELIGRMELLEGFQIGLIVVGLILFASCLIGLIVV 390          
The following BLAST results are available for this feature:
BLAST of EWM23168.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104049|gb|EWM23168.1|0.000e+0100.00uncharacterized protein Naga_100043g43 [Nannochlor... [more]
gi|585106443|gb|EWM24843.1|1.871e-7332.76CD36 antigen [Nannochloropsis gaditana][more]
gi|585106442|gb|EWM24842.1|2.719e-4034.26scavenger receptor class member 2 [Nannochloropsis... [more]
gi|585100954|gb|EWM20971.1|8.013e-3439.89hypothetical protein Naga_102070g1 [Nannochloropsi... [more]
gi|585100952|gb|EWM20970.1|1.412e-3240.43CD36 antigen [Nannochloropsis gaditana][more]
gi|585110788|gb|EWM28404.1|5.891e-3024.56cd36-like class b scavenger receptor [Nannochlorop... [more]
gi|1062861738|ref|XP_017947816.1|5.944e-1326.79PREDICTED: platelet glycoprotein 4 isoform X2 [Xen... [more]
gi|507931414|ref|XP_004676950.1|1.237e-1224.32PREDICTED: platelet glycoprotein 4 [Condylura cris... [more]
gi|512830661|ref|XP_002933143.2|1.478e-1226.79PREDICTED: platelet glycoprotein 4 isoform X1 [Xen... [more]
gi|1101552185|ref|XP_018942014.1|3.835e-1228.62PREDICTED: platelet glycoprotein 4-like [Cyprinus ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7553rna7553Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications