EWM23147.1, cds7530 (CDS) Nannochloropsis gaditana

Overview
NameEWM23147.1
Unique Namecds7530
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:208184..212659 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23147.1
ProductWinged helix-turn-helix transcription repressor
Orig transcript idgnl|cribi|Naga_100043g38.7230.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:208184..212659 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR006630Lupus_La_RNA-bd
Homology
BLAST of EWM23147.1 vs. NCBI_GenBank
Match: gi|585104028|gb|EWM23147.1| (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana])

HSP 1 Score: 3084.66 bits (7996), Expect = 0.000e+0
Identity = 1491/1491 (100.00%), Postives = 1491/1491 (100.00%), Query Frame = 0
Query:    1 MLQRSQGMANYQIPISLACLILLWRASAAKARHAGGNEKVESYRNAGGNGVEAPPAPSTSPMGLQPGVDSDAAYRVRKARYDKAHDLLELYLQQENMLEADAIREALELLEGNMSEWGALEETLGHGYLHDDDFMLMIRAHVIRGQMLAVAARYERQEGELAKLSSRGSGRDPPMVRALEEFEYACPMLWKVQLVSAAGSSRGENSNLTALGSDPFFFSAMPSFWGPPPGSGLAGGSLGAPEDDYHSCYAVLADLYSELQLHQQQHERQRKGKGADLMARYMVVRRQEEDREKSDAGGEAQQLNKQGLKLRRRTWGMVDRLALLSTSCPADVAASGSDSDSPYPKTQIIWNEAQVMRAHMLDIVWQLSAVTEPWNAQACVERAKIWLGMIRQRSQARMAYYLHHRQAAGGGADKGQGPRLGGKVREMQAAAAATVVSEGLQEEGNCYLGALTAVAEKGWEALEVERGEEGRLCGLPGGRRKDVVLPGFQSGEEILEAVREAYQHALLAPRLSLRDFFAKRGALKSRPLGSSSAGPAPFPSSASSSSPSPTFSSSSPPISPPHYTSLVGQQTAGEKASPFVLASLLALLCLLGGGFYHYSRRHSLSRCGRHKKKAAVLAAAVVKRGAQRKVQAGQATGNWCADESRGACQQARWTLSEHVASSLETATSLSRPFVGSLTRRASKMYSIWRVWARRRHQCTGRSKAQPESNKAKAQMLSPTPKEHSTKKIKGEYSKSGTRDGSGSRRRRCPGKRSELELVQKPPHYGHEKQQPAAQAFVSTPPVFPSPMSRQGIAGQEQRMVSVTPGFVEGSVVGDAFEWVGTGGSHCPKSKASTLSRRNASSERLTGESEAPRPDIYDTEKKQGQQPHLPTASCYQAGNKRKAGATAKLPCFPRSRAEKVEGKKEKCETIKSTEAKSKGLEESAMSLDSADAQEGKGPESVSEGPGASRKEEGGVSTVAVGNQQPEECRHWTQDQYQLEQEAEEGVSEKSTTVEVSPSDTTGPKRSRLSTSNSTCSSQSPAAVSHPVIEQPLHAACNADKVIEHRAEPRKQKAETEERNEGVVQDVDQKSTSITPATVKSRNEKKNAKKVNPRRPDFDKKPAPEPDQLQGALESEGNLSYSTHTTASSISSSSSSQSLNSFTPTTAQARSIQCNNVNCCMHGSLSRSTSTDSSTSTSSGNDASNRVSKVGSNGDTAGNLSMSNDSKRLDTEKTQSIRETIPNATKYRPDVPQNNKTGSIRVIHNGPSGDKPFHFSSKANGNGAYMDRTRGRICVPTLYPVLFHQLQRRPPPLPALHGHGIAVSIPGKDYYHDACTLQPMPPLGRTDPYSHRHGHADMRNYPPAYHQPSPYPVASYESSPQIEPSATRPAQAVDRKEVEDKLRRQLHYYFSPENLKRDYYLRSKMDGQGWVMLAEVAQFNRTKHLLGLLGFQGEKEVKGAPLDFSLLLSIVAESPKVEVQIMPTEKASGDGNGGRLVYKIRPRENPKQWVLSS 1491
            MLQRSQGMANYQIPISLACLILLWRASAAKARHAGGNEKVESYRNAGGNGVEAPPAPSTSPMGLQPGVDSDAAYRVRKARYDKAHDLLELYLQQENMLEADAIREALELLEGNMSEWGALEETLGHGYLHDDDFMLMIRAHVIRGQMLAVAARYERQEGELAKLSSRGSGRDPPMVRALEEFEYACPMLWKVQLVSAAGSSRGENSNLTALGSDPFFFSAMPSFWGPPPGSGLAGGSLGAPEDDYHSCYAVLADLYSELQLHQQQHERQRKGKGADLMARYMVVRRQEEDREKSDAGGEAQQLNKQGLKLRRRTWGMVDRLALLSTSCPADVAASGSDSDSPYPKTQIIWNEAQVMRAHMLDIVWQLSAVTEPWNAQACVERAKIWLGMIRQRSQARMAYYLHHRQAAGGGADKGQGPRLGGKVREMQAAAAATVVSEGLQEEGNCYLGALTAVAEKGWEALEVERGEEGRLCGLPGGRRKDVVLPGFQSGEEILEAVREAYQHALLAPRLSLRDFFAKRGALKSRPLGSSSAGPAPFPSSASSSSPSPTFSSSSPPISPPHYTSLVGQQTAGEKASPFVLASLLALLCLLGGGFYHYSRRHSLSRCGRHKKKAAVLAAAVVKRGAQRKVQAGQATGNWCADESRGACQQARWTLSEHVASSLETATSLSRPFVGSLTRRASKMYSIWRVWARRRHQCTGRSKAQPESNKAKAQMLSPTPKEHSTKKIKGEYSKSGTRDGSGSRRRRCPGKRSELELVQKPPHYGHEKQQPAAQAFVSTPPVFPSPMSRQGIAGQEQRMVSVTPGFVEGSVVGDAFEWVGTGGSHCPKSKASTLSRRNASSERLTGESEAPRPDIYDTEKKQGQQPHLPTASCYQAGNKRKAGATAKLPCFPRSRAEKVEGKKEKCETIKSTEAKSKGLEESAMSLDSADAQEGKGPESVSEGPGASRKEEGGVSTVAVGNQQPEECRHWTQDQYQLEQEAEEGVSEKSTTVEVSPSDTTGPKRSRLSTSNSTCSSQSPAAVSHPVIEQPLHAACNADKVIEHRAEPRKQKAETEERNEGVVQDVDQKSTSITPATVKSRNEKKNAKKVNPRRPDFDKKPAPEPDQLQGALESEGNLSYSTHTTASSISSSSSSQSLNSFTPTTAQARSIQCNNVNCCMHGSLSRSTSTDSSTSTSSGNDASNRVSKVGSNGDTAGNLSMSNDSKRLDTEKTQSIRETIPNATKYRPDVPQNNKTGSIRVIHNGPSGDKPFHFSSKANGNGAYMDRTRGRICVPTLYPVLFHQLQRRPPPLPALHGHGIAVSIPGKDYYHDACTLQPMPPLGRTDPYSHRHGHADMRNYPPAYHQPSPYPVASYESSPQIEPSATRPAQAVDRKEVEDKLRRQLHYYFSPENLKRDYYLRSKMDGQGWVMLAEVAQFNRTKHLLGLLGFQGEKEVKGAPLDFSLLLSIVAESPKVEVQIMPTEKASGDGNGGRLVYKIRPRENPKQWVLSS
Sbjct:    1 MLQRSQGMANYQIPISLACLILLWRASAAKARHAGGNEKVESYRNAGGNGVEAPPAPSTSPMGLQPGVDSDAAYRVRKARYDKAHDLLELYLQQENMLEADAIREALELLEGNMSEWGALEETLGHGYLHDDDFMLMIRAHVIRGQMLAVAARYERQEGELAKLSSRGSGRDPPMVRALEEFEYACPMLWKVQLVSAAGSSRGENSNLTALGSDPFFFSAMPSFWGPPPGSGLAGGSLGAPEDDYHSCYAVLADLYSELQLHQQQHERQRKGKGADLMARYMVVRRQEEDREKSDAGGEAQQLNKQGLKLRRRTWGMVDRLALLSTSCPADVAASGSDSDSPYPKTQIIWNEAQVMRAHMLDIVWQLSAVTEPWNAQACVERAKIWLGMIRQRSQARMAYYLHHRQAAGGGADKGQGPRLGGKVREMQAAAAATVVSEGLQEEGNCYLGALTAVAEKGWEALEVERGEEGRLCGLPGGRRKDVVLPGFQSGEEILEAVREAYQHALLAPRLSLRDFFAKRGALKSRPLGSSSAGPAPFPSSASSSSPSPTFSSSSPPISPPHYTSLVGQQTAGEKASPFVLASLLALLCLLGGGFYHYSRRHSLSRCGRHKKKAAVLAAAVVKRGAQRKVQAGQATGNWCADESRGACQQARWTLSEHVASSLETATSLSRPFVGSLTRRASKMYSIWRVWARRRHQCTGRSKAQPESNKAKAQMLSPTPKEHSTKKIKGEYSKSGTRDGSGSRRRRCPGKRSELELVQKPPHYGHEKQQPAAQAFVSTPPVFPSPMSRQGIAGQEQRMVSVTPGFVEGSVVGDAFEWVGTGGSHCPKSKASTLSRRNASSERLTGESEAPRPDIYDTEKKQGQQPHLPTASCYQAGNKRKAGATAKLPCFPRSRAEKVEGKKEKCETIKSTEAKSKGLEESAMSLDSADAQEGKGPESVSEGPGASRKEEGGVSTVAVGNQQPEECRHWTQDQYQLEQEAEEGVSEKSTTVEVSPSDTTGPKRSRLSTSNSTCSSQSPAAVSHPVIEQPLHAACNADKVIEHRAEPRKQKAETEERNEGVVQDVDQKSTSITPATVKSRNEKKNAKKVNPRRPDFDKKPAPEPDQLQGALESEGNLSYSTHTTASSISSSSSSQSLNSFTPTTAQARSIQCNNVNCCMHGSLSRSTSTDSSTSTSSGNDASNRVSKVGSNGDTAGNLSMSNDSKRLDTEKTQSIRETIPNATKYRPDVPQNNKTGSIRVIHNGPSGDKPFHFSSKANGNGAYMDRTRGRICVPTLYPVLFHQLQRRPPPLPALHGHGIAVSIPGKDYYHDACTLQPMPPLGRTDPYSHRHGHADMRNYPPAYHQPSPYPVASYESSPQIEPSATRPAQAVDRKEVEDKLRRQLHYYFSPENLKRDYYLRSKMDGQGWVMLAEVAQFNRTKHLLGLLGFQGEKEVKGAPLDFSLLLSIVAESPKVEVQIMPTEKASGDGNGGRLVYKIRPRENPKQWVLSS 1491          
BLAST of EWM23147.1 vs. NCBI_GenBank
Match: gi|553195157|ref|XP_005856092.1| (la ribonucleoprotein domain member 1, partial [Nannochloropsis gaditana CCMP526] >gi|422292966|gb|EKU20267.1| la ribonucleoprotein domain member 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1358.2 bits (3514), Expect = 0.000e+0
Identity = 656/664 (98.80%), Postives = 658/664 (99.10%), Query Frame = 0
Query:  828 KSKASTLSRRNASSERLTGESEAPRPDIYDTEKKQGQQPHLPTASCYQAGNKRKAGATAKLPCFPRSRAEKVEGKKEKCETIKSTEAKSKGLEESAMSLDSADAQEGKGPESVSEGPGASRKEEGGVSTVAVGNQQPEECRHWTQDQYQLEQEAEEGVSEKSTTVEVSPSDTTGPKRSRLSTSNSTCSSQSPAAVSHPVIEQPLHAACNADKVIEHRAEPRKQKAETEERNEGVVQDVDQKSTSITPATVKSRNEKKNAKKVNPRRPDFDKKPAPEPDQLQGALESEGNLSYSTHTTASSISSSSSSQSLNSFTPTTAQARSIQCNNVNCCMHGSLSRSTSTDSSTSTSSGNDASNRVSKVGSNGDTAGNLSMSNDSKRLDTEKTQSIRETIPNATKYRPDVPQNNKTGSIRVIHNGPSGDKPFHFSSKANGNGAYMDRTRGRICVPTLYPVLFHQLQRRPPPLPALHGHGIAVSIPGKDYYHDACTLQPMPPLGRTDPYSHRHGHADMRNYPPAYHQPSPYPVASYESSPQIEPSATRPAQAVDRKEVEDKLRRQLHYYFSPENLKRDYYLRSKMDGQGWVMLAEVAQFNRTKHLLGLLGFQGEKEVKGAPLDFSLLLSIVAESPKVEVQIMPTEKASGDGNGGRLVYKIRPRENPKQWVLSS 1491
            KSKASTLSRRNASSERLTGESEAPRPDIYDTEKKQGQQPHLPTASCYQAGNKR AGATAKLPCFPRSRAEKV+GKKEKCETIKSTEAKSKGLEESAMSLDSADAQEGKGPESVSEGPGASRKEEGGVSTVAVG QQPEECRHWTQDQYQLEQEAEEGVSEKSTTVEVSPSDTTGPKRSRLSTSNSTCSSQSPAAVSHPVIEQPLHAACNADKVIEHRAEPRKQKAETEERNEGVVQDVDQKSTSITPATVKSRNEKKNAKKVNPRRPD DKKPAPEPDQLQGALESEGNLSYSTHTTASSISSSSSSQSLNSFTPTTAQARSIQCNNVNCCMHGSLSRSTSTDSSTSTSSGNDASNRVSKVGSNGDTAGNLSMSNDSKRLDTEK QSI ETIPNATKYRPDVPQNNKTGSIRVIHNGPSGDKPFHFSSKANGNGAYMDRTRGRICVPTLYPVLFHQLQRRPPPLPALHGHGIAVSIPGKDYYHDACTLQPMPPLGRTDPYSHRHGHADMRNYPPAYHQPSPYPVA+YESSPQIEPSATRPAQAVDRKEVEDKLRRQLHYYFSPENLKRDYYLRSKMDGQGWVMLAEVAQFNRTKHLLGLLGFQGEKEV GAPLDFSLLLSIVAESPKVEVQIMPTEKASGDGNGGRLVYKIRPRENPKQWVLSS
Sbjct:    1 KSKASTLSRRNASSERLTGESEAPRPDIYDTEKKQGQQPHLPTASCYQAGNKRNAGATAKLPCFPRSRAEKVDGKKEKCETIKSTEAKSKGLEESAMSLDSADAQEGKGPESVSEGPGASRKEEGGVSTVAVGKQQPEECRHWTQDQYQLEQEAEEGVSEKSTTVEVSPSDTTGPKRSRLSTSNSTCSSQSPAAVSHPVIEQPLHAACNADKVIEHRAEPRKQKAETEERNEGVVQDVDQKSTSITPATVKSRNEKKNAKKVNPRRPDIDKKPAPEPDQLQGALESEGNLSYSTHTTASSISSSSSSQSLNSFTPTTAQARSIQCNNVNCCMHGSLSRSTSTDSSTSTSSGNDASNRVSKVGSNGDTAGNLSMSNDSKRLDTEKIQSICETIPNATKYRPDVPQNNKTGSIRVIHNGPSGDKPFHFSSKANGNGAYMDRTRGRICVPTLYPVLFHQLQRRPPPLPALHGHGIAVSIPGKDYYHDACTLQPMPPLGRTDPYSHRHGHADMRNYPPAYHQPSPYPVANYESSPQIEPSATRPAQAVDRKEVEDKLRRQLHYYFSPENLKRDYYLRSKMDGQGWVMLAEVAQFNRTKHLLGLLGFQGEKEVNGAPLDFSLLLSIVAESPKVEVQIMPTEKASGDGNGGRLVYKIRPRENPKQWVLSS 664          
BLAST of EWM23147.1 vs. NCBI_GenBank
Match: gi|159464249|ref|XP_001690354.1| (hypothetical protein CHLREDRAFT_99865 [Chlamydomonas reinhardtii] >gi|158279854|gb|EDP05613.1| predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 73.9442 bits (180), Expect = 2.798e-12
Identity = 44/112 (39.29%), Postives = 60/112 (53.57%), Query Frame = 0
Query: 1378 DKLRRQLHYYFSPENLKRDYYLRSKMDGQGWVMLAEVAQFNRTKHLLGLLGFQGEKEVKGAPLDFSLLLSIVAESPKVEVQIMPTEKASGDGNGGRLVYKIRPRENPKQWVL 1489
            + +R+Q+ YYFS ENL +D +LRSKMD  GW+ LA VA FNR + L                LD++L++  +A+SP VEV        S D         +R REN  +WVL
Sbjct:    8 EAVRKQIDYYFSVENLCKDIFLRSKMDDNGWIPLAVVANFNRVRIL---------------TLDWTLIVDAIADSPIVEV--------SSDST------MLRARENWDRWVL 90          
BLAST of EWM23147.1 vs. NCBI_GenBank
Match: gi|302830005|ref|XP_002946569.1| (hypothetical protein VOLCADRAFT_79113 [Volvox carteri f. nagariensis] >gi|300268315|gb|EFJ52496.1| hypothetical protein VOLCADRAFT_79113, partial [Volvox carteri f. nagariensis])

HSP 1 Score: 73.9442 bits (180), Expect = 9.864e-12
Identity = 56/174 (32.18%), Postives = 78/174 (44.83%), Query Frame = 0
Query: 1317 PMPPLGRTDPYSHRHGHADMRNYPPAYHQPSPYPVASYESSPQIEPSATRPAQAVDRKE-VEDKLRRQLHYYFSPENLKRDYYLRSKMDGQGWVMLAEVAQFNRTKHLLGLLGFQGEKEVKGAPLDFSLLLSIVAESPKVEVQIMPTEKASGDGNGGRLVYKIRPRENPKQWVL 1489
            P+PP  +   Y          N+   Y     YP A Y         A  PA     K+ + + +R+Q+ YYFS +NL +D +LRSKMD  GW+ LA VA FNR + L                LD++L++  +A+SP VEV        S D         +R R N  +WVL
Sbjct:    8 PVPPTAQQAQY----------NFTGYYAGGMFYPTAPY--------GAAGPADKAQTKQMLTEAVRKQIDYYFSVDNLCKDIFLRSKMDDNGWIPLAVVANFNRVRIL---------------TLDWTLIVDAIADSPVVEV--------SSDST------MLRARGNWDRWVL 134          
BLAST of EWM23147.1 vs. NCBI_GenBank
Match: gi|658013614|ref|XP_008342111.1| (PREDICTED: la-related protein 1A-like [Malus domestica])

HSP 1 Score: 74.3294 bits (181), Expect = 1.100e-10
Identity = 61/201 (30.35%), Postives = 85/201 (42.29%), Query Frame = 0
Query: 1288 PPPLPALHGHGIAVSIPGKDYYHDACTLQPMPPLGRTDPYSHRHGHADMRNYPPAYHQPSPYPVASYESSPQIEPSATRPAQAVDRKEVEDKLRRQLHYYFSPENLKRDYYLRSKMDGQGWVMLAEVAQFNRTKHLLGLLGFQGEKEVKGAPLDFSLLLSIVAESPKVEVQIMPTEKASGDGNGGRLVYKIRPRENPKQWV 1488
            PPPLP    H     IP   +YH      P+ P                  +PP Y+ P P  V   +    + P A  P Q  D   +   + RQ+ YYFS +NLK+D YL S MD QGWV ++ +A+FNR K++   + F              +L S++  S  VEVQ                 YKIR R+   +W+
Sbjct:   47 PPPLPYHQQH----YIPPPMFYHRTSCPTPVNP------------QLQCVQFPPFYYVP-PSSVIMIDQGLTVNPWAPLPPQ--DLLVLRSNIVRQIEYYFSDKNLKKDRYLISIMDDQGWVSISTIAEFNRLKNMCTDIPF--------------ILDSLLLGSTSVEVQ----------------GYKIRLRDKWLKWI 198          
BLAST of EWM23147.1 vs. NCBI_GenBank
Match: gi|598073619|ref|XP_007377638.1| (hypothetical protein SPAPADRAFT_57384 [Spathaspora passalidarum NRRL Y-27907] >gi|344299519|gb|EGW29872.1| hypothetical protein SPAPADRAFT_57384 [Spathaspora passalidarum NRRL Y-27907])

HSP 1 Score: 69.707 bits (169), Expect = 2.160e-10
Identity = 42/126 (33.33%), Postives = 70/126 (55.56%), Query Frame = 0
Query: 1367 PAQAVDRKEVEDKLRRQLHYYFSPENLKRDYYLRSKMDGQGWVMLAEVAQFNRTKHLLGLLGFQGEKEVKGAPLDFSLLLSIVAESPKVEVQIMPTEKASGDGNGGRLV-YKIRPRENPKQWVLSS 1491
            P     ++E +  L +QL YYFS ENL RD YLR  MDG+GWV L+ + +F R K ++  +  + E +V       +++L  V +   +E+      K SG+ +  +L   ++R +EN +QW+L +
Sbjct:    5 PPPISPKQEPQQALIQQLDYYFSLENLIRDVYLRKNMDGEGWVSLSLILEFKRVKIIINSIQNEVEGDVD------AIILDAVKQCNNLEI------KYSGEESSAKLEDVQLRVKENYEQWLLPA 118          
BLAST of EWM23147.1 vs. NCBI_GenBank
Match: gi|1175848752|ref|XP_020578036.1| (la-related protein 1B-like [Phalaenopsis equestris])

HSP 1 Score: 72.4034 bits (176), Expect = 3.443e-9
Identity = 62/186 (33.33%), Postives = 83/186 (44.62%), Query Frame = 0
Query: 1312 ACTLQPMPPLGRTDPYSHRHGHADMRNYPPAYHQPSPYPVASYESSPQIEPSATRPAQ--------AVDRKEVEDKLRRQLHYYFSPENLKRDYYLRSKMDGQGWVMLAEVAQFNRTKHLLGLLGFQGEKEVKGAPLDFSLLLSIVAESPKVEVQIMPTEKASGDGNGGRLVYKIRPRENPKQWVL 1489
            A  + P PP+    P+S+  G  D ++  P Y+  +P     Y  S +  P A+ PA         AVD +     L +Q+ YYFSPENL +D YLR  MD QGWV ++ +A FNR K L   + +               +L  V  S  VEVQ        GD        KIR R +   WVL
Sbjct:  306 APFIAPPPPV---RPFSNHMGFPDFQS--PIYYVAAP----PYPESLKGVPFASHPAPTPQLMYFPAVDPQRA--MLLKQIDYYFSPENLCKDLYLRQNMDEQGWVPISLIAGFNRVKQLTNNIPY---------------ILDTVLLSNVVEVQ--------GD--------KIRKRNDWMTWVL 449          
BLAST of EWM23147.1 vs. NCBI_GenBank
Match: gi|1147569734|ref|XP_020088482.1| (la-related protein 1A-like [Ananas comosus])

HSP 1 Score: 69.707 bits (169), Expect = 7.631e-9
Identity = 43/122 (35.25%), Postives = 60/122 (49.18%), Query Frame = 0
Query: 1349 YPVASYESSPQIEPSATRPAQ-----------AVDRKEVEDKLRRQLHYYFSPENLKRDYYLRSKMDGQGWVMLAEVAQFNRTKHLLGLLGFQGEKEVKGAPLDFSLLLSIVAESPKVEVQI 1459
            +P+ + E+ P   P  + P Q            VD  E+  KLRRQ+ YYFS ENL  D+YL+S MD +GWV + E+A+F + K L   L              F LL   +  S  VE+Q+
Sbjct:  169 FPINNLETPPT--PVNSEPVQKYVIVIDGKVEIVDHPELLRKLRRQVEYYFSDENLVDDWYLKSIMDSEGWVTVREIAEFRKVKQLTKNLDV------------FQLLREALVTSNHVEIQL 276          
BLAST of EWM23147.1 vs. NCBI_GenBank
Match: gi|359376045|emb|CCE86627.1| (Piso0_005127 [Millerozyma farinosa CBS 7064])

HSP 1 Score: 67.3958 bits (163), Expect = 9.667e-8
Identity = 53/190 (27.89%), Postives = 89/190 (46.84%), Query Frame = 0
Query: 1308 YYHDACTLQPMPPLGRTDPYSHRHG------HADMRNYPPAYHQPSPYPVASYESSPQIEPSATRPAQAVD--RKEVEDKLRRQLHYYFSPENLKRDYYLRSKMDGQGWVMLAEVAQFNRTKHLLGLLGFQGEKEVKGAPLDFSLLLSIVAESPKVEVQIMPTEKASGDGNGGRLVYKIRPRENPKQWVL 1489
            +YH     QP  P    + +++RH       H + RN+ P  +  S +   S    PQ  P   +        +++ +  L +Q+ YYFS ENL +D +LR  MD QGWV L  +  F R K +L   G Q   E K +     ++L  + +   +E++++  +K   D     +V  +R ++N  QW+L
Sbjct:  265 FYHP----QPFVPNQNFENFNNRHFKPNQYRHQNNRNFRP--NGSSGFIHGSMVMPPQFAPQPMQQIPPPISPKQDPQQALTQQVDYYFSLENLIKDIFLRKNMDEQGWVPLNLILNFKRVKIILN--GIQNSIENKESNTSNQIILDSIKQCENLEIKLI-NDKTFDDAVVDDIV--LRVKDNYAQWLL 443          
BLAST of EWM23147.1 vs. NCBI_GenBank
Match: gi|388851573|emb|CCF54763.1| (uncharacterized protein UHOR_01535 [Ustilago hordei])

HSP 1 Score: 66.2402 bits (160), Expect = 5.478e-7
Identity = 64/242 (26.45%), Postives = 100/242 (41.32%), Query Frame = 0
Query: 1224 KYRPDVPQNNKTGSIRVIHNGPSGDKPFHFSSKANGNGAYMDRTRGRICVPTLYPVLFHQLQRRPPPLPALHGHGIAVSIPGKDYYHDACTLQPMPPLGRTDPYSHRHG--HADMRNYPPAY----HQPSPYPVAS----YESSPQIEPSATRPAQAVDRKEVEDKLRRQLHYYFSPENLKRDYYLRSKMDGQGWVMLAEVAQFNRTKHLLGLLGFQGEKEVKGAPLDFSLLLSIVAESPKV 1455
            + RP  P N   G+++  +  PSG+     SS ++G G      R   C         H L R  PP            +P      D            T P        H     +PP+Y    H  +P P +S    ++++ Q    +  P+ ++ +      L  Q+ +YFS +NL+ D++LR KMDGQGWV +A VA F R +      G  G+ E+    L +S +L +  E  +V
Sbjct:  821 QLRPSAP-NGINGTLKPSN--PSGN---TKSSTSSGPGTPATANRSSPCGSVTSSPQVHPLPRAAPPF-----------VPSTTTISDPSPYPIPIFYPPTGPSGAATPMLHPTNTQFPPSYNPYLHSTAPLPPSSIPYLFDATSQT--GSPTPSGSLGQ------LLGQIEFYFSQQNLQGDFFLRQKMDGQGWVDIAMVAGFKRVR------GITGDVEMVKDALLWSAVLDVDVERMRV 1031          
The following BLAST results are available for this feature:
BLAST of EWM23147.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104028|gb|EWM23147.1|0.000e+0100.00Winged helix-turn-helix transcription repressor [N... [more]
gi|553195157|ref|XP_005856092.1|0.000e+098.80la ribonucleoprotein domain member 1, partial [Nan... [more]
gi|159464249|ref|XP_001690354.1|2.798e-1239.29hypothetical protein CHLREDRAFT_99865 [Chlamydomon... [more]
gi|302830005|ref|XP_002946569.1|9.864e-1232.18hypothetical protein VOLCADRAFT_79113 [Volvox cart... [more]
gi|658013614|ref|XP_008342111.1|1.100e-1030.35PREDICTED: la-related protein 1A-like [Malus domes... [more]
gi|598073619|ref|XP_007377638.1|2.160e-1033.33hypothetical protein SPAPADRAFT_57384 [Spathaspora... [more]
gi|1175848752|ref|XP_020578036.1|3.443e-933.33la-related protein 1B-like [Phalaenopsis equestris... [more]
gi|1147569734|ref|XP_020088482.1|7.631e-935.25la-related protein 1A-like [Ananas comosus][more]
gi|359376045|emb|CCE86627.1|9.667e-827.89Piso0_005127 [Millerozyma farinosa CBS 7064][more]
gi|388851573|emb|CCF54763.1|5.478e-726.45uncharacterized protein UHOR_01535 [Ustilago horde... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7548rna7548Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications