EWM23160.1, cds7507 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23160.1
Unique Name	cds7507
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002472.1:163291..163374 -
Alignment location	CM002472.1:162982..163096 -
Alignment location	CM002472.1:162598..162755 -
Alignment location	CM002472.1:162428..162525 -
Alignment location	CM002472.1:162242..162340 -
Alignment location	CM002472.1:161752..162170 -
Alignment location	CM002472.1:161332..161654 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23160.1
Product	heterogeneous nuclear
Orig transcript id	gnl\|cribi\|Naga_100043g12.7243.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:163291..163374 -
CM002472.1	supercontig	CM002472.1:162982..163096 -
CM002472.1	supercontig	CM002472.1:162598..162755 -
CM002472.1	supercontig	CM002472.1:162428..162525 -
CM002472.1	supercontig	CM002472.1:162242..162340 -
CM002472.1	supercontig	CM002472.1:161752..162170 -
CM002472.1	supercontig	CM002472.1:161332..161654 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait
IPR000504	RRM_dom

Homology

[Close]

BLAST of EWM23160.1 vs. NCBI_GenBank
Match: gi|585104041|gb|EWM23160.1| (heterogeneous nuclear [Nannochloropsis gaditana])

HSP 1 Score: 894.034 bits (2309), Expect = 0.000e+0
Identity = 431/431 (100.00%), Postives = 431/431 (100.00%), Query Frame = 0

Query:    1 MERHNPNQSIIDAPHQGAVEYSPLHPQMYGMTPGQALVSPFGPIQTMSSSALPHLWPSDAHMRQFGNYPPIHMGPLEYSEAVDRDIEETLEDLLGPFPALRLRGLPFDAGVRDVITFFHGMGVLDVVMTSKGECIVLFNTLMDMQLGLGKDTQNMGRRYIEIFVAKRVDYYHAVRQRTEEGYYRRLHFRGDVHGFAWRTMRSQEGSFHDFNAALFYSNQPYQHPQAHLQAHTLHRALQMTPYQQPSYQTVPGAGLGPATTGLADTERQGETGKLAARQGQNVAAPTIPREVAIAATERAQNSGILKLRGLPFTCSSTDIRDFFEGFTVLSDDIQLILRADGRLTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARALNGQQHIAGSSAVCIGSSSAKTSESADSEISTSGRGEALTTLEA 431
            MERHNPNQSIIDAPHQGAVEYSPLHPQMYGMTPGQALVSPFGPIQTMSSSALPHLWPSDAHMRQFGNYPPIHMGPLEYSEAVDRDIEETLEDLLGPFPALRLRGLPFDAGVRDVITFFHGMGVLDVVMTSKGECIVLFNTLMDMQLGLGKDTQNMGRRYIEIFVAKRVDYYHAVRQRTEEGYYRRLHFRGDVHGFAWRTMRSQEGSFHDFNAALFYSNQPYQHPQAHLQAHTLHRALQMTPYQQPSYQTVPGAGLGPATTGLADTERQGETGKLAARQGQNVAAPTIPREVAIAATERAQNSGILKLRGLPFTCSSTDIRDFFEGFTVLSDDIQLILRADGRLTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARALNGQQHIAGSSAVCIGSSSAKTSESADSEISTSGRGEALTTLEA
Sbjct:    1 MERHNPNQSIIDAPHQGAVEYSPLHPQMYGMTPGQALVSPFGPIQTMSSSALPHLWPSDAHMRQFGNYPPIHMGPLEYSEAVDRDIEETLEDLLGPFPALRLRGLPFDAGVRDVITFFHGMGVLDVVMTSKGECIVLFNTLMDMQLGLGKDTQNMGRRYIEIFVAKRVDYYHAVRQRTEEGYYRRLHFRGDVHGFAWRTMRSQEGSFHDFNAALFYSNQPYQHPQAHLQAHTLHRALQMTPYQQPSYQTVPGAGLGPATTGLADTERQGETGKLAARQGQNVAAPTIPREVAIAATERAQNSGILKLRGLPFTCSSTDIRDFFEGFTVLSDDIQLILRADGRLTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARALNGQQHIAGSSAVCIGSSSAKTSESADSEISTSGRGEALTTLEA 431

[Close]

BLAST of EWM23160.1 vs. NCBI_GenBank
Match: gi|1210529031|dbj|GAX12177.1| (heterogeneous nuclear ribonucleoprotein F/H [Fistulifera solaris])

HSP 1 Score: 144.821 bits (364), Expect = 1.263e-35
Identity = 101/316 (31.96%), Postives = 153/316 (48.42%), Query Frame = 0

Query:   84 RDIEETLEDLLGPFPALRLRGLPFDAGVRDVITFFHGMGVLDVVMTSKGECIVLFNTLMDMQLGLGKDTQNMGRRYIEIFVAKRVDYYHAVRQRTEEGYYRRLHFRGDVHGFAWRTMRSQ----------EGSFHDFNAALFYSNQPYQHPQAHLQAHTLHR-ALQMTPYQQPSYQTVPGAGLGPATTGLADTERQGETGKLAARQGQNVAAPTIPREVAIAATERAQNSGILKLRGLPFTCSSTDIRDFFEGFTVLSDDIQLILRADGRLTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARAL 388
            R   + LE +LGPFP +RLR LP+D  + D++ FF G+  +DVV+  +G+  V+F   MD Q+ L +  Q +GR++I+I  A R +YY A+  + E         RG     +    R++            + H +  +L +S Q      + L   T     +  T   Q +  T  G     ++T        G   + A   G  V AP  P + A    +  +++G L++RGLPF  +  DI  FF G+  + + + L  R DGR TGEA++ F S  DA  A +   RSM G RY+ELF +  EE  RAL
Sbjct:   68 RGSTDPLEAVLGPFPCVRLRYLPYDVSLEDILVFFQGLVFVDVVLGGQGDAFVVFANPMDFQMALQRSRQTIGRKFIDIGPASRNEYYEAIALQVERE-------RGPKTSLSVSRARNEPEEQPHAVDSSAAHHLWGDSLPHSRQGVSVLSSQLGGRTSSPFGVNETLKGQSTASTPVGVQALASSTSTGSATSSGRASRPAETSGGVVHAP--PPKRAGGGIQVGEHTGFLRMRGLPFAATKEDIIQFFAGYDPVPESVVLTYRNDGRATGEAYIGFLSANDAERAMELNRRSM-GNRYIELFISNKEESGRAL 373

[Close]

BLAST of EWM23160.1 vs. NCBI_GenBank
Match: gi|299472433|emb|CBN77621.1| (heterogeneous nuclear ribonucleoprotein, putative [Ectocarpus siliculosus])

HSP 1 Score: 113.62 bits (283), Expect = 8.248e-25
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 0

Query:   89 TLEDLLGPFPALRLRGLPFDAGVRDVITFFHGMGVLDVVMTSK------GECIVLFNTLMDMQLGLGKDTQNMGRRYIEIFVAKRVDYYHAV 174
            +LED+LGPFP +RLRGLPF+A + DV+ FF G+  LDVVM ++      GE IV+   LM+MQ+ L +D Q+MGRRYIEIF +KR+DYY AV
Sbjct:   81 SLEDVLGPFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRADGRGAGEAIVVLPNLMEMQMALSRDKQHMGRRYIEIFQSKRMDYYSAV 172

HSP 2 Score: 99.7525 bits (247), Expect = 6.274e-20
Identity = 44/89 (49.44%), Postives = 68/89 (76.40%), Query Frame = 0

Query:  301 NSGILKLRGLPFTCSSTDIRDFFEGFTVLSDDIQLILRADGRLTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARALN 389
            ++G++++RGLPF+ +  D+ +FF+G  V  D IQ ++R DGR+TGEAFVSFSS  ++ +A  S++ + +GTRYVELF +TPEE+ R +N
Sbjct:  216 HTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESEAA-MSRNGNHMGTRYVELFASTPEEIVRHMN 303

[Close]

BLAST of EWM23160.1 vs. NCBI_GenBank
Match: gi|1137249747|gb|OMP07148.1| (hypothetical protein COLO4_07582 [Corchorus olitorius])

HSP 1 Score: 102.064 bits (253), Expect = 2.266e-22
Identity = 48/95 (50.53%), Postives = 70/95 (73.68%), Query Frame = 0

Query:  295 ATERAQNSGILKLRGLPFTCSSTDIRDFFEGFTVLSDDIQLILRADGRLTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARALN 389
            A + A+++GIL+LRGLPF+    DI +FF  F +  DDI +IL ADGR +GEA+V F S ED+++A   KDR +LG+RY+ELF +TP+E+  A++
Sbjct:   45 AKDSAEHTGILRLRGLPFSAGKEDIIEFFSEFGLSEDDIHIILNADGRASGEAYVEFRSAEDSKAA-MVKDRKVLGSRYIELFPSTPDEMDDAIS 138

[Close]

BLAST of EWM23160.1 vs. NCBI_GenBank
Match: gi|224002324|ref|XP_002290834.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974256|gb|EED92586.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 105.916 bits (263), Expect = 1.647e-21
Identity = 48/90 (53.33%), Postives = 64/90 (71.11%), Query Frame = 0

Query:   88 ETLEDLLGPFPALRLRGLPFDAGVRDVITFFHGMGVLDVVMT---SKGECIVLFNTLMDMQLGLGKDTQNMGRRYIEIFVAKRVDYYHAV 174
            + LE LLGPFP +R+RGLPF+A + DV+ FF G+ V+DVV+      GE  V+F   MD Q+GL +D Q+MGRRY+E+F  KR DYY A+
Sbjct:   82 DPLEALLGPFPCVRVRGLPFEATLEDVLVFFQGLVVIDVVLVPHAESGEAFVVFANPMDFQMGLQRDHQSMGRRYLEVFQGKRSDYYAAI 171

HSP 2 Score: 80.8777 bits (198), Expect = 4.922e-13
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 0

Query:  301 NSGILKLRGLPFTCSSTDIRDFFEGFTVLSDDIQLILRADGRLTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARAL 388
            ++G ++LRGLPF  S  DI DFF+ +  +   + L  R DGR TGE +V+F   +DA+ A  +  RS +G+RY+ELF +  EE AR +
Sbjct:  295 HTGYVRLRGLPFQASKQDILDFFQEYNPIESSVLLTYRGDGRSTGEGYVAFKDADDAKEA-MALHRSTIGSRYIELFISNKEEHARNV 381

[Close]

BLAST of EWM23160.1 vs. NCBI_GenBank
Match: gi|1191646180|gb|OTF98153.1| (putative RNA-binding (RRM/RBD/RNP motifs) family protein [Helianthus annuus])

HSP 1 Score: 102.449 bits (254), Expect = 3.062e-21
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 0

Query:  283 AAPTIPREVAIAATERAQNSGILKLRGLPFTCSSTDIRDFFEGFTVLSDDIQLILRADGRLTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARA 387
             +P   R   +   +R + + ILKLRGLPF     DI +FF+G+ V  D + +  R DG++TGEA+V+F SVE A+ A  SKDR M+G+RYVELF +TP+E  RA
Sbjct:  155 GSPPSSRSKKVRDKDRMEYTEILKLRGLPFNVVKADIVEFFKGYNVADDKVHIACRPDGKVTGEAYVTFESVEVAKQA-MSKDRYMIGSRYVELFPSTPDEARRA 258

HSP 2 Score: 78.1814 bits (191), Expect = 1.174e-12
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 0

Query:   97 FPALRLRGLPFDAGVRDVITFFHGMGVLDVVMTSKG-----ECIVLFNTLMDMQLGLGKDTQNMGRRYIEIFVAKRVDYYHAV 174
            FP +RLRGLPF+    D+  FF G+ ++D+++ +KG     +  V+F+  +   L + K+ QNMGRRY+E+F  K+ +YY+AV
Sbjct:   56 FPVVRLRGLPFNCTDVDIFKFFTGLEIVDLLLVNKGGKFSGDAFVVFSRPIQADLAVQKNRQNMGRRYVEVFKCKKQEYYYAV 138

[Close]

BLAST of EWM23160.1 vs. NCBI_GenBank
Match: gi|1137213950|gb|OMO81684.1| (hypothetical protein CCACVL1_12292 [Corchorus capsularis])

HSP 1 Score: 101.679 bits (252), Expect = 5.227e-21
Identity = 48/95 (50.53%), Postives = 70/95 (73.68%), Query Frame = 0

Query:  295 ATERAQNSGILKLRGLPFTCSSTDIRDFFEGFTVLSDDIQLILRADGRLTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARALN 389
            A + A+++GIL+LRGLPF+    DI +FF  F +  DDI +IL ADGR +GEA+V F S ED+++A   KDR +LG+RY+ELF +TP+E+  A++
Sbjct:  151 AKDSAEHTGILRLRGLPFSAGKEDIIEFFSEFGLSEDDIHIILNADGRASGEAYVEFRSAEDSKAA-MVKDRKVLGSRYIELFPSTPDEMDDAIS 244

HSP 2 Score: 78.9518 bits (193), Expect = 5.447e-13
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 0

Query:   96 PFPALRLRGLPFDAGVRDVITFFHGMGVLDVVMTSK-----GECIVLFNTLMDMQLGLGKDTQNMGRRYIEIFVAKRVDYYHAV 174
            PFP +RLRGLPFD    DV  FF G+ ++DV+   K     GE   +    + +   L ++ QNMGRRY+E+F ++R +YY A+
Sbjct:   43 PFPVVRLRGLPFDCTEADVSAFFRGLDIVDVLFVHKYGKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSQRQEYYKAI 126

[Close]

BLAST of EWM23160.1 vs. NCBI_GenBank
Match: gi|470102582|ref|XP_004287731.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 100.523 bits (249), Expect = 1.898e-20
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 0

Query:  296 TERAQNSGILKLRGLPFTCSSTDIRDFFEGFTVLSDDIQLILRADGRLTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARALN 389
             E+ + + ILKLRGLPF+   + I DFF+GF V+ D + +  R DG+ TGEA+V F S E+A+ A  SKD+ M+G+RYVELF +TP+E  RA N
Sbjct:  167 KEKMEYTEILKLRGLPFSVKRSQIVDFFKGFKVIEDRVHIACRPDGKATGEAYVEFVSAEEAKRA-MSKDKMMIGSRYVELFPSTPDEARRAEN 259

HSP 2 Score: 87.8113 bits (216), Expect = 4.908e-16
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0

Query:   94 LGPFPALRLRGLPFDAGVRDVITFFHGMGVLDVVMTSKG-----ECIVLFNTLMDMQLGLGKDTQNMGRRYIEIFVAKRVDYYHAV 174
            L  FP +RLRGLPF+    D+  FF G+ ++DV++ +KG     E  V+F   + ++L L +D QNMGRRY+E+F  KR DYY+AV
Sbjct:   51 LPAFPVVRLRGLPFNCADIDIFKFFAGLDIVDVLLVNKGGRFSGEAFVVFAGPVQVELALQRDRQNMGRRYVEVFTCKRQDYYNAV 136

HSP 3 Score: 64.3142 bits (155), Expect = 6.350e-8
Identity = 35/95 (36.84%), Postives = 53/95 (55.79%), Query Frame = 0

Query:  304 ILKLRGLPFTCSSTDIRDFFEGFTVLSDDIQLILRADGRLTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARALNGQQHIAGSS 398
            +++LRGLPF C+  DI  FF G  ++  D+ L++   GR +GEAFV F+       A Q +DR  +G RYVE+F    ++   A+  +    G S
Sbjct:   56 VVRLRGLPFNCADIDIFKFFAGLDIV--DV-LLVNKGGRFSGEAFVVFAGPVQVELALQ-RDRQNMGRRYVEVFTCKRQDYYNAVAAEVSYEGGS 146

[Close]

BLAST of EWM23160.1 vs. NCBI_GenBank
Match: gi|470102580|ref|XP_004287730.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 100.523 bits (249), Expect = 2.032e-20
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 0

Query:  296 TERAQNSGILKLRGLPFTCSSTDIRDFFEGFTVLSDDIQLILRADGRLTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARALN 389
             E+ + + ILKLRGLPF+   + I DFF+GF V+ D + +  R DG+ TGEA+V F S E+A+ A  SKD+ M+G+RYVELF +TP+E  RA N
Sbjct:  172 KEKMEYTEILKLRGLPFSVKRSQIVDFFKGFKVIEDRVHIACRPDGKATGEAYVEFVSAEEAKRA-MSKDKMMIGSRYVELFPSTPDEARRAEN 264

HSP 2 Score: 87.8113 bits (216), Expect = 6.295e-16
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0

Query:   94 LGPFPALRLRGLPFDAGVRDVITFFHGMGVLDVVMTSKG-----ECIVLFNTLMDMQLGLGKDTQNMGRRYIEIFVAKRVDYYHAV 174
            L  FP +RLRGLPF+    D+  FF G+ ++DV++ +KG     E  V+F   + ++L L +D QNMGRRY+E+F  KR DYY+AV
Sbjct:   56 LPAFPVVRLRGLPFNCADIDIFKFFAGLDIVDVLLVNKGGRFSGEAFVVFAGPVQVELALQRDRQNMGRRYVEVFTCKRQDYYNAV 141

HSP 3 Score: 64.3142 bits (155), Expect = 6.458e-8
Identity = 35/95 (36.84%), Postives = 53/95 (55.79%), Query Frame = 0

Query:  304 ILKLRGLPFTCSSTDIRDFFEGFTVLSDDIQLILRADGRLTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARALNGQQHIAGSS 398
            +++LRGLPF C+  DI  FF G  ++  D+ L++   GR +GEAFV F+       A Q +DR  +G RYVE+F    ++   A+  +    G S
Sbjct:   61 VVRLRGLPFNCADIDIFKFFAGLDIV--DV-LLVNKGGRFSGEAFVVFAGPVQVELALQ-RDRQNMGRRYVEVFTCKRQDYYNAVAAEVSYEGGS 151

[Close]

BLAST of EWM23160.1 vs. NCBI_GenBank
Match: gi|923633579|ref|XP_013751553.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Brassica napus])

HSP 1 Score: 93.9745 bits (232), Expect = 7.322e-20
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = 0

Query:  297 ERAQNSGILKLRGLPFTCSSTDIRDFFEGFTVLSDDIQLILRADGRLTGEAFVSFSSVEDARSAQQSKDRSMLGTRYVELFHTTPEELARALN 389
            E A ++GIL+LRGLPF+    DI DFF+ F +  D I + +  +GR TG+AFV F S E++R+A   KDR MLG+RY+ELF ++ EEL  AL+
Sbjct:   12 ENADHTGILRLRGLPFSAGKEDILDFFKDFDLSEDSIHVTVNGEGRPTGDAFVEFGSAEESRAA-MVKDRKMLGSRYIELFPSSVEELEDALS 103

The following BLAST results are available for this feature:

BLAST of EWM23160.1 vs. NCBI_GenBank

BLAST of EWM23160.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585104041\|gb\|EWM23160.1\|	0.000e+0	100.00	heterogeneous nuclear [Nannochloropsis gaditana]	[more]
gi\|1210529031\|dbj\|GAX12177.1\|	1.263e-35	31.96	heterogeneous nuclear ribonucleoprotein F/H [Fistu...	[more]
gi\|299472433\|emb\|CBN77621.1\|	8.248e-25	57.61	heterogeneous nuclear ribonucleoprotein, putative ...	[more]
gi\|1137249747\|gb\|OMP07148.1\|	2.266e-22	50.53	hypothetical protein COLO4_07582 [Corchorus olitor...	[more]
gi\|224002324\|ref\|XP_002290834.1\|	1.647e-21	53.33	predicted protein [Thalassiosira pseudonana CCMP13...	[more]
gi\|1191646180\|gb\|OTF98153.1\|	3.062e-21	47.62	putative RNA-binding (RRM/RBD/RNP motifs) family p...	[more]
gi\|1137213950\|gb\|OMO81684.1\|	5.227e-21	50.53	hypothetical protein CCACVL1_12292 [Corchorus caps...	[more]
gi\|470102582\|ref\|XP_004287731.1\|	1.898e-20	51.06	PREDICTED: heterogeneous nuclear ribonucleoprotein...	[more]
gi\|470102580\|ref\|XP_004287730.1\|	2.032e-20	51.06	PREDICTED: heterogeneous nuclear ribonucleoprotein...	[more]
gi\|923633579\|ref\|XP_013751553.1\|	7.322e-20	50.54	PREDICTED: heterogeneous nuclear ribonucleoprotein...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7525	rna7525	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications