EWM23144.1, cds7501 (CDS) Nannochloropsis gaditana

Overview
NameEWM23144.1
Unique Namecds7501
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:147930..149595 +
Alignment locationCM002472.1:149797..150413 +
Alignment locationCM002472.1:150605..150973 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23144.1
ProductCheckpoint protein Rad24
Orig transcript idgnl|cribi|Naga_100043g4.7227.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:147930..149595 +
CM002472.1supercontigCM002472.1:149797..150413 +
CM002472.1supercontigCM002472.1:150605..150973 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0007049cell cycle
GO:0006281DNA repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR004582Checkpoint_prot_Rad17_Rad24
IPR027417P-loop_NTPase
Homology
BLAST of EWM23144.1 vs. NCBI_GenBank
Match: gi|585104025|gb|EWM23144.1| (Checkpoint protein Rad24 [Nannochloropsis gaditana])

HSP 1 Score: 1785 bits (4622), Expect = 0.000e+0
Identity = 883/883 (100.00%), Postives = 883/883 (100.00%), Query Frame = 0
Query:    1 MVAADFIEISSSEASTSSSDEGEEAEREGADSALQPHGQKRRVRLRRPNLSKSIENIEVKKNDAMAQKSRKRSRQRPSLSSCSSSDEEKARSNRHAHDAGENTDTCAEECIKSSVRRSNFSLCGKDSGNDMEGEDEEQEEQEEVDEQAGYEKMEPGGKGTRQTVRQGRKRISVSIRSASKRSQSHAKSPAGVSDAGSLDEEVGPPRRRSRTAMTGAPPASSSPAADSTSLFPSSTKKVPKMEAHARPSGSHVNALRLVFGKTPRPAPDKAFSTQAPSRPPRHNKEESTRGKSGALGAGSLWTEKHRPRKAADLSIPPKKVREVQQWLEGALGLVCEESGLRPGAHKGGGQKLLVVRGPAGVGKSAMVQVLAEALELPVLRWTEETPWESREDAKRKKWEGDEMAMGGGGRQYVSQAEGFRAFVRGAAYGPLEMAPSAKAGLDRSRDAGDPNACGDWADPGAEGRRQGPKGERKGEDVRRALLVMEEVPYHATGRAAAHFQAALASFLAASVHPAVVIFTEEHEDRAGSGALERLLTRPLLHAKGVRQIHINPATDANMRRILTHIASAEGLGPSRSEVEAIVACSRGDLRHAILTLQLQLQGSRAAPNAPPRALARSDASASSSHLLRQCTGGRKGEGGRGGEDKGGEGRGGRRVGRRREGEEAERKDTYMSSFHALGKVLHAKRLPESDESRKGEGDPRGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGDVEELAEAMAFFADADVLLARVYSTAFHRDRTDATFPEEYVLSILGRTVAHSNRHPAGGQGTGFRGMTAPRYFEVLRQRRETGRRLGLLCQDYVGKVARAGRASSIRMTVGEMVDEMVPFAKQIGMPQDVREGIGVSMYEGWGEGKLED 883
            MVAADFIEISSSEASTSSSDEGEEAEREGADSALQPHGQKRRVRLRRPNLSKSIENIEVKKNDAMAQKSRKRSRQRPSLSSCSSSDEEKARSNRHAHDAGENTDTCAEECIKSSVRRSNFSLCGKDSGNDMEGEDEEQEEQEEVDEQAGYEKMEPGGKGTRQTVRQGRKRISVSIRSASKRSQSHAKSPAGVSDAGSLDEEVGPPRRRSRTAMTGAPPASSSPAADSTSLFPSSTKKVPKMEAHARPSGSHVNALRLVFGKTPRPAPDKAFSTQAPSRPPRHNKEESTRGKSGALGAGSLWTEKHRPRKAADLSIPPKKVREVQQWLEGALGLVCEESGLRPGAHKGGGQKLLVVRGPAGVGKSAMVQVLAEALELPVLRWTEETPWESREDAKRKKWEGDEMAMGGGGRQYVSQAEGFRAFVRGAAYGPLEMAPSAKAGLDRSRDAGDPNACGDWADPGAEGRRQGPKGERKGEDVRRALLVMEEVPYHATGRAAAHFQAALASFLAASVHPAVVIFTEEHEDRAGSGALERLLTRPLLHAKGVRQIHINPATDANMRRILTHIASAEGLGPSRSEVEAIVACSRGDLRHAILTLQLQLQGSRAAPNAPPRALARSDASASSSHLLRQCTGGRKGEGGRGGEDKGGEGRGGRRVGRRREGEEAERKDTYMSSFHALGKVLHAKRLPESDESRKGEGDPRGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGDVEELAEAMAFFADADVLLARVYSTAFHRDRTDATFPEEYVLSILGRTVAHSNRHPAGGQGTGFRGMTAPRYFEVLRQRRETGRRLGLLCQDYVGKVARAGRASSIRMTVGEMVDEMVPFAKQIGMPQDVREGIGVSMYEGWGEGKLED
Sbjct:    1 MVAADFIEISSSEASTSSSDEGEEAEREGADSALQPHGQKRRVRLRRPNLSKSIENIEVKKNDAMAQKSRKRSRQRPSLSSCSSSDEEKARSNRHAHDAGENTDTCAEECIKSSVRRSNFSLCGKDSGNDMEGEDEEQEEQEEVDEQAGYEKMEPGGKGTRQTVRQGRKRISVSIRSASKRSQSHAKSPAGVSDAGSLDEEVGPPRRRSRTAMTGAPPASSSPAADSTSLFPSSTKKVPKMEAHARPSGSHVNALRLVFGKTPRPAPDKAFSTQAPSRPPRHNKEESTRGKSGALGAGSLWTEKHRPRKAADLSIPPKKVREVQQWLEGALGLVCEESGLRPGAHKGGGQKLLVVRGPAGVGKSAMVQVLAEALELPVLRWTEETPWESREDAKRKKWEGDEMAMGGGGRQYVSQAEGFRAFVRGAAYGPLEMAPSAKAGLDRSRDAGDPNACGDWADPGAEGRRQGPKGERKGEDVRRALLVMEEVPYHATGRAAAHFQAALASFLAASVHPAVVIFTEEHEDRAGSGALERLLTRPLLHAKGVRQIHINPATDANMRRILTHIASAEGLGPSRSEVEAIVACSRGDLRHAILTLQLQLQGSRAAPNAPPRALARSDASASSSHLLRQCTGGRKGEGGRGGEDKGGEGRGGRRVGRRREGEEAERKDTYMSSFHALGKVLHAKRLPESDESRKGEGDPRGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGDVEELAEAMAFFADADVLLARVYSTAFHRDRTDATFPEEYVLSILGRTVAHSNRHPAGGQGTGFRGMTAPRYFEVLRQRRETGRRLGLLCQDYVGKVARAGRASSIRMTVGEMVDEMVPFAKQIGMPQDVREGIGVSMYEGWGEGKLED 883          
BLAST of EWM23144.1 vs. NCBI_GenBank
Match: gi|224002336|ref|XP_002290840.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974262|gb|EED92592.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 206.453 bits (524), Expect = 1.318e-51
Identity = 172/622 (27.65%), Postives = 273/622 (43.89%), Query Frame = 0
Query:  286 ESTRGKSGALGAGSLWTEKHRPRKAADLSIPPKKVREVQQWLEGALGLVCEESGLRP----------------------------GAHKGGGQKLLVVRGPAGVGKSAMVQVLAEALELPVLRWTEETPWESREDAKRKKWEGDEMAMGGGGRQ--YVSQAEGFRAFVRGAAYGPLEMAPSAKAGLDRSRDAGDPNACGDWADPGAEGRRQGPKGERKGEDVRRALLVMEEVPYHATGRAAAHFQAALASFLAASVHPAVVIFTEEHEDRAGSGALERLLTRPLLHAKGVRQIHINPATDANMRRILTHIASAEGLGPSRSEV-EAIVACSRGDLRHAILTLQLQLQGSRAAPNAPPRALARSDASASSSHLLRQCTGGRKGEGGRGGEDKGGEGRGGRRVGRRREGEEAERKDTYMSSFHALGKVLHAKRLPESD------ESRKGEG---DPRGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGDVEELAEAMAFFADADVLLARVYSTAFHRDRTDATFPEEYVLSILGRTVAHSNRHPAGGQGTGFRGMTAPRYFEVLRQRRETGRRLGLLCQDYVG--KVARAGRASSIRMTVG---EMVDEMVPFAKQIGMPQ 862
            +ST   + A G+  +W +KH PR   +L I PKK+ EV+ WL   +     +S  +P                            G +     K++++ G  G+GKSAMV+VLA  + L +L W ++        A        ++   G G    Y SQ   F  F+     G L M     AGLD                  ++  R     E+ GE    +++++EE+P      +A  F+  +   +  +  P V +F++ +E +     LERL+   +L++  V+ + I   T A M++ L  IA  EGLG   +E+ E +   S GDLRHAIL LQ +  GS                                           G   GGR      +  +A ++D  +S+FHALGK+L+AKR P S       E R G     D RG L FVPE+VL++ +M      +F+  H+   F D+ +L++A    +DA   + R+        +TD  FP +Y  S+ GR +A +N++PA  Q   FR ++AP+ FEV+ ++RE   ++  L +   G  K+A       I  T+G   + V   +PF + + +PQ
Sbjct:  336 QSTAADAAAKGSSEMWIDKHAPRTTKELCIAPKKIDEVKSWLVSHIN--SRQSKRKPHSNSNNNNNNNNNNKAMSMHTTPYDNPLGDNPPPDTKMMILIGSPGIGKSAMVKVLAREMNLEILMWNDDHVDYVDNSASF------QIGCDGAGEYLPYQSQLASFEEFLNT---GGLGMDSLEVAGLDSGGGG---------GGKSSKSGRTSLTSEKDGE-YEGSVILIEEIPNIYNAESAQAFRNIMERHIRRTNVPTVFVFSDVYEGKHKPEDLERLIPSSMLYSLLVQTLQIQAVTKAKMKKSLEAIAKEEGLGRLPTELMEELHLSSGGDLRHAILALQFRF-GS-------------------------------------------GSSTGGRARAVDLDSTKASKRDVKLSTFHALGKLLYAKRKPRSQDPYSTTEKRTGISAWDDGRGPLDFVPEQVLEKTDMATSSAISFIAYHSPDFFTDIAQLSDAFDSISDAGEFMDRL-------GQTDGPFPMDYASSLGGRAIADANKNPAPSQ---FRHLSAPKVFEVMNKKRENETKMKQLRKRLSGSEKIA-------INDTIGSAHQFVTNSLPFMRNV-IPQ 874          
BLAST of EWM23144.1 vs. NCBI_GenBank
Match: gi|1072230845|gb|OEU15578.1| (P-loop containing nucleoside triphosphate hydrolase protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 172.555 bits (436), Expect = 2.029e-42
Identity = 152/568 (26.76%), Postives = 246/568 (43.31%), Query Frame = 0
Query:  300 LWTEKHRPRKAADLSIPPKKVREVQQWLEGALGLVCEESGLRPGAHKGGGQKLLVVRGPAGVGKSAMVQVLAEALELPVLRWTEETPWESREDAKRKKWEGDEMAMGGGGRQYVSQAEGFRAFVR--GAAYGPLEMAPSAKAGLDRSRDAGDPNACGDWADPGAEGRRQGPKGERKGEDVRRALLVMEEVPYHATGRAAAHFQAALASFLAASVHPAVVIFTEEHEDRAGSGALERLLTRPLLHAKGVRQI-HINPATDANMRRILTHIASAEGLGPSRSEVEAIVACSRGDLRHAILTLQLQLQGSRAAPNAPPRALARSDASASSSHLLRQCTGGRKGEGGRGGEDKGGEGRGGRRVGRRREGEEAERKDTYMSSFHALGKVLHAKRLPESDESRKGEGDPRGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGDVEELAEAMAFFADADVLLARVYSTAFHRDRTDATFPEEYVLSILGRTVAHSNRHPAGGQGTGFRGMTAPRYFEVLRQRRETGRRLGLLCQDYVGKVARAGRASSIRMTVGEMVDEMVPFAKQIGMPQDV 864
            +W EK  P+ ++DL + PKKV+E+  W++G     C++   +     G            GVGKS  ++++A+ L LP++ W E           R + EG +        Q  S  + F  F++  GA +G L++  S+                                          +++++E++P      A   F+  L++ L  S  P V+IF++  E +     LERL+    L+      I  INP T   M++IL+ IA  E      + +E I   S GD+RHA++TLQL   G            ++SD + +        T   KG+  R                           DT +S+FH+LGK+L+AKR      S  G      RL+F PE +L+R ++  +G   F++ H+   F D+ EL+ A   F+DA  LL     +    +   + F  +Y  SI GR VA++N HPA  +   FR  + P+ F+V+R  ++         Q  V +++R  R S     +   V E +PF +QI +PQDV
Sbjct:    1 MWVEKFTPKSSSDLCVAPKKVKEIMSWIQG-----CKKKKQKLLILVGS----------PGVGKSTTIRLIAKELNLPIVSWNESY-------NPRGEQEGVDSRSLFSVEQ-TSALDSFNEFLQQSGAGFGSLQLMSSSPD-----------------------------NASNNSNSNSNSIILLEDLPNLHGKNAELRFRTYLSNHLQRSQLPTVLIFSDVSEGKHKPEDLERLIDPNDLYDNDRTTIMQINPVTKPKMKKILSTIAKREKYYFDSNFLEEIHHQSHGDIRHAVMTLQLHATGR-----------SKSDCATT--------TTLHKGQNNR---------------------------DTKLSAFHSLGKILYAKR-----ASINGVD---SRLTFDPEAILERSDLGVDGSLRFLEFHSPDFFTDITELSNAYGHFSDAAFLLGHDTVSGSRSNDNGSAF--KYASSIAGRAVANTNIHPAPNK---FRQFSRPKVFDVIRNGKQN--------QILVDQLSR--RLSKCHCPLSNFVTESLPFVRQI-VPQDV 446          
BLAST of EWM23144.1 vs. NCBI_GenBank
Match: gi|1210529058|dbj|GAX12204.1| (cell cycle checkpoint protein [Fistulifera solaris])

HSP 1 Score: 165.236 bits (417), Expect = 1.129e-39
Identity = 148/584 (25.34%), Postives = 243/584 (41.61%), Query Frame = 0
Query:  299 SLWTEKHRPRKAADLSIPPKKVREVQQWLEGALGLVCEESGLRPGAHKGGGQKLLVVRGPAGVGKSAMVQVLAEALELPVLRWTEE-----TPWESREDAKRKKWEGDEMAMGGGGRQYVSQAEGFRAFVR--GAAYGPLEMAPSAKAGLDRSRDAGDPNACGDWADPGAEGRRQGPKGERKGEDVRRALLVMEEVPYHATGRAAAHFQAALASFLAASVHPAVVIFTEEHEDRAGSGALERLLTRPLLHAKGVRQIHINPATDAN-MRRILTHIASAEGLGPSRSEVEAIVACSRGDLRHAILTLQLQLQGSRAAPNAPPRALARSDASASSSHLLRQCTGGRKGEGGRGGEDKGGEGRGGRRVGRRREGEEAERKDTYMSSFHALGKVLHAKRLPESDESRKGEGDPRGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGDVEELAEAMAFFADADVLLARVYSTA-FHRDRTDATFPEEYVLSILGRTVAHSNRHPAGGQGTGFRGMTAPRYFEVLRQRRETGRRL-----GLLCQDYVGKVARAGRASSIRMTVGEMVDEMVPFAKQIGMPQDVREGI 868
            SLW++++ P    DL +  KKV+EV  WL+ ++                   KLL++ G  G+GKS M+ +L +     VL W E      T   SR D+     E            Y S  + F+ F+   G  Y PL ++                                   GE    D RR  ++++++PY  T    A F+      L  S  P ++I ++  E +      + L  R L ++  V  IH+NP T +  + +++  +A+  G+  S    E I     GD R A+ TLQ +  G                                + EG R  +  GG+ R                 D  +++FHALGK+L+AKR     +S       R  L F PE V+++ + E   + AF++ H++  + D+ + +EA    +DA + L++ + T  + +      FPE YV S+ GRTVA +N+HPA  +   FR  +AP  ++V R+RR+   +L      LL Q  +  +A +   S+          E+VPF ++I  PQ +   +
Sbjct:   41 SLWSDEYAPTSINDLCVASKKVKEVTAWLDQSIS------------------KLLILVGSPGIGKSTMIHLLLKERSWNVLEWNESFSSLYTNGSSRNDSTLSSIE------------YQSPVDSFQQFLEEAGTGYHPLSIS-----------------------------------GE---TDSRRTAILLDDLPYLHTAETQARFRRLFQQHLEQSRIPTILIMSDVTEGKC-QHLTDYLDNRFLYNSGLVTIIHVNPPTRSRFVSKVVQRVATLAGISISVDAAEDIYDRVEGDARAALATLQFEYVG--------------------------------RKEGQRTAKFHGGDMR-----------------DKKLNAFHALGKLLYAKR-----KSTSASLYERPPLEFDPERVVEQSDTELSNVLAFLEFHSVDFYTDISDFSEATHCLSDAALWLSQSHLTGNYTKHSPSHVFPEAYVTSLAGRTVAWTNQHPAVSR---FRQFSAPPIYQVARKRRDNQNQLSQWRDSLLNQGVIHDLANSTAWST----------EIVPFVRKI-FPQSMTSSL 487          
BLAST of EWM23144.1 vs. NCBI_GenBank
Match: gi|765131538|ref|XP_011477992.1| (cell cycle checkpoint protein RAD17 [Oryzias latipes])

HSP 1 Score: 144.05 bits (362), Expect = 4.454e-32
Identity = 154/602 (25.58%), Postives = 239/602 (39.70%), Query Frame = 0
Query:  257 LVFGKTPRPAPDK----AFSTQAPSRPPRHNKEESTRGKSGALGAGSLWTEKHRPRKAADLSIPPKKVREVQQWLEGALGLVCEESGLRPGAHKGGGQKLLVVRGPAGVGKSAMVQVLAEALELPVLRWTEETPWESREDAKRKKWEGDEMAMGGGGRQYVSQAEGFRAF-VRGAAYGPLEMAPSAKAGLDRSRDAGDPNACGDWADPGAEGRRQGPKGERKGEDVRRALLVMEEVPYHATGRAAAHFQAALASFLAASVHPAVVIFTEEHEDRAGSGALERLLTRPLLHAKGVRQIHINPATDANMRRILTHIASAEGLG-------PSRSEVEAIVACSRGDLRHAILTLQLQLQGSRAAPNAPPRALARSDASASSSHLLRQCTGGRKGEGG--RGGEDKGGEG-RGGRRVGR------RREGEEAER----KDTYMSSFHALGKVLHAKR-----LPESDESRKGEGDPRGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGDVEELAEAMAFFADADVLLARVYSTAFHRDRTDATFPEEYVLSILGRTVAHSNRHPAGGQGTGFRGMTAPRYFEVLRQRRETGRRLGLLCQDYV 828
             ++ KT    P K    AFS Q         + ES +G     G    W +++ P+  A+L++  KKV +VQ W+                AH+  G  +LV+ GP+G GK+A V+VL++ L L V  WT  +  E     +   W  D       G  Y SQ   FR F +R   YG L MA                       D GA G++               L+++E+ P +   R  +     L  F+  +  P V + +   E  +G G++  L  R +     +  I  NP    +M ++L  I++ E +        P ++E+EA+ + S GD+R AI +LQ                                C  G  G  G  R  +D+   G RG  R  +        + +E ER    KD  +  F ALGK+LH KR     +P            R  L   PE V++R  + AE  + ++  + L  F +VE++  A  + +DAD+L A         D T+     +Y  S+  R + HSN H       GFR +  P + +V  + RE       L +D+ 
Sbjct:   34 FLWSKTDTKNPKKRKGGAFSCQ---------RLESDQG-----GQDESWVDRYSPQSQAELAVHKKKVEDVQTWM---------------NAHRSKG-GILVLTGPSGSGKTATVRVLSQELGLKVQEWTNPSNVEPYSSWQNADWRID-------GLTYSSQVTQFREFLLRAYKYGCLSMA----------------------GDGGAAGKK---------------LILVEDFP-NQFSRQPSSLHDLLRRFVRIARCPLVFVVS---ESVSGDGSVRSLFPREIQEELHINCISFNPVAPTSMMKVLGSISAQEAVKSGGRTSVPGQAELEALCSGSAGDIRSAINSLQF------------------------------LCLLGSSGNSGVSRTKKDRPASGRRGASRSNQKTKKTKTVKDQEEERAIGGKDAALFLFRALGKILHCKRGGHTEVPSPALPPHLLHHCREDLLVEPEVVVERSHVSAEMFNLYLHQNYLDFFSEVEDVERASEYLSDADLLAA---------DWTNRIILRDYSSSVAVRGILHSNSHQV---SVGFRPLHKPAWLQVSTKHRENCLAARHLFRDFC 515          
BLAST of EWM23144.1 vs. NCBI_GenBank
Match: gi|1007788042|ref|XP_015830530.1| (PREDICTED: cell cycle checkpoint protein RAD17 isoform X2 [Nothobranchius furzeri])

HSP 1 Score: 142.895 bits (359), Expect = 6.733e-32
Identity = 139/534 (26.03%), Postives = 216/534 (40.45%), Query Frame = 0
Query:  298 GSLWTEKHRPRKAADLSIPPKKVREVQQWLEGALGLVCEESGLRPGAHKGGGQKLLVVRGPAGVGKSAMVQVLAEALELPVLRWTEETPWESREDAKRKKWEGDEMAMGGGGRQYVSQAEGFRAFV-RGAAYGPLEMAPSAKAGLDRSRDAGDPNACGDWADPGAEGRRQGPKGERKGEDVRRALLVMEEVPYHATGRAAAHFQAALASFLAASVHPAVVIFTEEHEDRAGSGALERLLTRPLLHAKGVRQIHINPATDANMRRILTHIASAEG-------LGPSRSEVEAIVACSRGDLRHAILTLQLQLQGSRAAPNAPPRALARSDASASSSHLLRQCTGGRKGEGGRGGEDKGGEGRGGRRVGRRREGEEAERKDTYMSSFHALGKVLHAKRLPESDESRKGEGDP-------RGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGDVEELAEAMAFFADADVLLARVYSTAFHRDRTDATFPEEYVLSILGRTVAHSNRHPAGGQGTGFRGMTAPRYFEVLRQRRET 816
            G  W + + PR  ADL++  KKV EV++W++                 K G   +L++ GP+G GK+A VQVL++ + + V  WT  +  ES   ++   W  +       G  Y SQ   F  F+ R   Y  L+M            D G  N                           R L+++E+ P +   R  A   A L  F+ +S H ++V    E   ++G    + L  R L    G+  I  NP     M+++L HI   E          P  +++E + + S GD+R A+ +LQ            P + L  +          R+C   R  E  +    K G  RG        E +    KD  +  F ALGK+LH KR    ++     G P       R  L   PE V++R  M  E  S ++  + L  F D+E++  A  + +DAD+L A         D T  +  E Y  S+  R + HS+ H      +GFR +  P +F V ++ R+ 
Sbjct:   67 GEAWVDTYSPRSQADLAVHRKKVEEVEKWIKT-----------HTNTSKAG---VLILTGPSGCGKTATVQVLSQEMGVQVQEWTNTSNLESYGSSQHADWSTN-------GFSYSSQLTQFEEFLLRANKYKCLKMI----------SDKGTTN---------------------------RKLILVEDFP-NQFYRHPASLHAVLRRFVNSS-HSSLVFVVSE--SQSGGSRSQALFPRELQEELGISCISFNPVAPTAMKKVLNHILLQETRKSCERVCVPDHAQLEVLCSGSSGDIRSAVNSLQFFC--------LPEKELFMAK---------RRCVAPR--ERVQRISMKAGPSRG-------EEDQAIGGKDASLFLFRALGKILHCKR---GNQDASVPGLPPHLLQHHRHTLLVTPELVVERSHMSGELFSLYLHQNYLDFFSDLEDVDRASQYLSDADLLTA---------DWTSRSLLEPYGSSVACRGLLHSHSHQV---SSGFRPLHKPSWFLVNKKYRDN 497          
BLAST of EWM23144.1 vs. NCBI_GenBank
Match: gi|1007788040|ref|XP_015830529.1| (PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Nothobranchius furzeri])

HSP 1 Score: 142.895 bits (359), Expect = 7.385e-32
Identity = 139/534 (26.03%), Postives = 216/534 (40.45%), Query Frame = 0
Query:  298 GSLWTEKHRPRKAADLSIPPKKVREVQQWLEGALGLVCEESGLRPGAHKGGGQKLLVVRGPAGVGKSAMVQVLAEALELPVLRWTEETPWESREDAKRKKWEGDEMAMGGGGRQYVSQAEGFRAFV-RGAAYGPLEMAPSAKAGLDRSRDAGDPNACGDWADPGAEGRRQGPKGERKGEDVRRALLVMEEVPYHATGRAAAHFQAALASFLAASVHPAVVIFTEEHEDRAGSGALERLLTRPLLHAKGVRQIHINPATDANMRRILTHIASAEG-------LGPSRSEVEAIVACSRGDLRHAILTLQLQLQGSRAAPNAPPRALARSDASASSSHLLRQCTGGRKGEGGRGGEDKGGEGRGGRRVGRRREGEEAERKDTYMSSFHALGKVLHAKRLPESDESRKGEGDP-------RGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGDVEELAEAMAFFADADVLLARVYSTAFHRDRTDATFPEEYVLSILGRTVAHSNRHPAGGQGTGFRGMTAPRYFEVLRQRRET 816
            G  W + + PR  ADL++  KKV EV++W++                 K G   +L++ GP+G GK+A VQVL++ + + V  WT  +  ES   ++   W  +       G  Y SQ   F  F+ R   Y  L+M            D G  N                           R L+++E+ P +   R  A   A L  F+ +S H ++V    E   ++G    + L  R L    G+  I  NP     M+++L HI   E          P  +++E + + S GD+R A+ +LQ            P + L  +          R+C   R  E  +    K G  RG        E +    KD  +  F ALGK+LH KR    ++     G P       R  L   PE V++R  M  E  S ++  + L  F D+E++  A  + +DAD+L A         D T  +  E Y  S+  R + HS+ H      +GFR +  P +F V ++ R+ 
Sbjct:   67 GEAWVDTYSPRSQADLAVHRKKVEEVEKWIKT-----------HTNTSKAG---VLILTGPSGCGKTATVQVLSQEMGVQVQEWTNTSNLESYGSSQHADWSTN-------GFSYSSQLTQFEEFLLRANKYKCLKMI----------SDKGTTN---------------------------RKLILVEDFP-NQFYRHPASLHAVLRRFVNSS-HSSLVFVVSE--SQSGGSRSQALFPRELQEELGISCISFNPVAPTAMKKVLNHILLQETRKSCERVCVPDHAQLEVLCSGSSGDIRSAVNSLQFFC--------LPEKELFMAK---------RRCVAPR--ERVQRISMKAGPSRG-------EEDQAIGGKDASLFLFRALGKILHCKR---GNQDASVPGLPPHLLQHHRHTLLVTPELVVERSHMSGELFSLYLHQNYLDFFSDLEDVDRASQYLSDADLLTA---------DWTSRSLLEPYGSSVACRGLLHSHSHQV---SSGFRPLHKPSWFLVNKKYRDN 497          
BLAST of EWM23144.1 vs. NCBI_GenBank
Match: gi|1211247463|ref|XP_021477869.1| (cell cycle checkpoint protein RAD17 [Oncorhynchus mykiss])

HSP 1 Score: 141.354 bits (355), Expect = 5.498e-31
Identity = 163/644 (25.31%), Postives = 260/644 (40.37%), Query Frame = 0
Query:  245 ARPSGSHVNALRLVFGKTPRPAPDKAFSTQAPSRPPRHNKEESTRGKSGALGAGSLWTEKHRPRKAADLSIPPKKVREVQQWLEGALGLVCEESGLRPGAHKGGGQKLLVVRGPAGVGKSAMVQVLAEALELPVLRWTEETPWE--------SREDAKRKKWEGDEMAMGGGGRQYVSQAEGFRAFV-RGAAYGPLEMAPSAKAGLDRSRDAGDPNACGDWADPGAEGRRQGPKGERKGEDVRRALLVMEEVPYHATGRAAAHFQAALASFLAASVHPAVVIFTEEHEDRAGSGALERLLTRPLLHAKGVRQIHINPATDANMRRILTHIASAEGLG-------PSRSEVEAIVACSRGDLRHAILTLQLQLQGSRAAPNAPPRALARSDASASSS--HLLRQCTGGRKGEGGRGGEDKGGEGRGGRRVGRRREGEEAERKDTYMSSFHALGKVLHAKR-LPESDESRKGEGDP-------RGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGDVEELAEAMAFFADADVLLARVYSTAFHRDRTDATFPEEYVLSILGRTVAHSNR-HPAGGQGTGFRGMTAPRYFEVLRQRRETGRRLGLLCQDYVGKVARAGRASSIRMTVGEMVDEMVPFAKQIGMP 861
            ARPS + +N+ + +  +   P   K   T   + P + +++E              W + H+P   A+L++  KK+ EV+ W+            + P   KGG   +L++ GP+G GKSA VQVLA+ L   V  W+  +           S  D  R+ ++ D    G  G    SQ   F+ F+ R   Y  L+M+                                   GE    D  R L+++E+ P +   R        L  F+     P + I ++     + S     L  + +    GV  I  NP    +M ++L+ I S + +        P ++ +E + + S GD+R AI +LQ      +        A+ R  A+A+SS   +++   G RK +   G + +   G                 KD+ +  F ALGK+L+ KR  PE+ E  +G   P       R RL   PE V++R  M  E  S ++Q + L  F DVE++A A  + +DAD L A   S +            EY  S+  R + HSN  H AG    GFR +  P +  V ++ RE        CQ      A      S  +T   +  E++P+  Q+  P
Sbjct:   53 ARPSSTDLNSSKRLCKRRAVPNASK-LQTSTSTEPAQGDQDEP-------------WVDIHKPHSQAELAVHKKKIEEVEDWMR---------VHVDPKTAKGGA--VLLLTGPSGCGKSATVQVLAQELGYRVQEWSNPSSLSEYRPSADRSDPDTYRQTFDPDSRFNGFYGS---SQTGLFQEFLLRANKYNRLQMS-----------------------------------GEGGASDSDRKLILVEDFP-NQFYRQPGSLHDILRRFVKTCRRPLLFIVSDSLSGDSSS---RLLFPKHIQEELGVCNISFNPVAPTSMMKVLSRIVSVQAVKSGGKMCVPGKAALELLCSGSSGDIRSAINSLQFSCLTDQPMKKGF-SAVERGKATATSSGRAVVKATRGKRKAKDSEGRDKELAIGG----------------KDSSLFLFRALGKILYCKRESPEASEGSQGPSLPAHLSEHHRDRLLVDPEAVVERSHMSGEFFSLYLQQNYLEFFSDVEDVARASEYLSDADFLTAEWSSRSTM---------GEYGSSVATRGLLHSNSGHVAG----GFRPLHKPNWLLVNKKYREN-------CQ------AAQSLFISFCLTPVSLQTELLPYLAQLSNP 586          
BLAST of EWM23144.1 vs. NCBI_GenBank
Match: gi|929245611|ref|XP_013998881.1| (PREDICTED: cell cycle checkpoint protein RAD17 [Salmo salar] >gi|929245613|ref|XP_013998882.1| PREDICTED: cell cycle checkpoint protein RAD17 [Salmo salar])

HSP 1 Score: 140.198 bits (352), Expect = 1.150e-30
Identity = 156/588 (26.53%), Postives = 241/588 (40.99%), Query Frame = 0
Query:  301 WTEKHRPRKAADLSIPPKKVREVQQWLEGALGLVCEESGLRPGAHKGGGQKLLVVRGPAGVGKSAMVQVLAEALELPVLRWT------EETPWESRED--AKRKKWEGDEMAMGGGGRQYVSQAEGFRAFV-RGAAYGPLEMAPSAKAGLDRSRDAGDPNACGDWADPGAEGRRQGPKGERKGEDVRRALLVMEEVPYHATGRAAAHFQAALASFLAASVHPAVVIFTEEHEDRAGSGALERLLTRPLLHAKGVRQIHINPATDANMRRILTHIASAEGLG-------PSRSEVEAIVACSRGDLRHAILTLQLQLQGSRAAPNAPPRALARSDASASSS--HLLRQCTGGRKGEGGRGGEDKGGEGRGGRRVGRRREGEEAERKDTYMSSFHALGKVLHAKR-LPESDESRKGEGDP-------RGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGDVEELAEAMAFFADADVLLARVYSTAFHRDRTDATFPEEYVLSILGRTVAHSNR-HPAGGQGTGFRGMTAPRYFEVLRQRRETGRRLGLLCQDYVGKVARAGRASSIRMTVGEMVDEMVPFAKQIGMP 861
            W + H+P   A+L++  KK+ EV+ W+            + P   KGG   +L++ GP+G GKSA VQVLA+ L   V  W+      E  P   R D    R+ ++ D    G  G    SQ   F+ F+ R   Y  L+M+                                   GE    D  R L+++E+ P +   R        L  F+     P + I ++     + S     L  + +    GV  I  NP    +M ++L+ I S + +        P ++ +E + + S GD+R AI +LQ      ++       A+ R  A+A+SS   +++   G RK +   G + +  +  GG              KD  +  F ALGK+L+ KR  PE  E  +G   P       R RL   PE V++R  M  E  S ++Q + L  F DVE++A A  + +DAD L A   S +            EY  S+  R + HSN  H AG    GFR +  P +  V ++ RE        CQ      A      S  +T   +  E++P+  Q+  P
Sbjct:   95 WVDTHKPHSQAELAVHKKKIEEVEDWMR---------VHVDPKTAKGGA--VLLLTGPSGCGKSATVQVLAQELGYRVQEWSNPSSLSEYRPSADRSDPDTYRQTFDPDSRFNGFYGS---SQTGLFQEFLLRANKYNRLQMS-----------------------------------GEGGASDSDRKLILVEDFP-NQFYRQPGCLHDILRRFVKTCRRPLLFIVSDSLSGDSSS---RLLFPKHVQEELGVCNISFNPVAPTSMMKVLSRIVSVQAVKSGGKMCVPDKAALELLCSGSSGDIRSAINSLQFSCLTDQSMKKGF-WAVERGKATATSSGRAVVKATRGKRKAKDAEGRDKE--QAIGG--------------KDASLFLFRALGKILYCKRESPEGSEGSQGPSLPAHLSEHHRDRLLVDPEAVVERSHMSGEFFSLYLQQNYLEFFSDVEDVARASEYLSDADFLTAEWSSRSTM---------GEYGSSVATRGLLHSNSGHVAG----GFRPLHKPNWLLVNKKYREN-------CQ------AAQSLFISFCLTPVSLQTELLPYLAQLSNP 586          
BLAST of EWM23144.1 vs. NCBI_GenBank
Match: gi|1158835190|ref|XP_020326171.1| (cell cycle checkpoint protein RAD17 [Oncorhynchus kisutch])

HSP 1 Score: 140.198 bits (352), Expect = 1.398e-30
Identity = 166/646 (25.70%), Postives = 261/646 (40.40%), Query Frame = 0
Query:  245 ARPSGSHVNALRLVFGKTPRPAPDKAFSTQAPSRPPRHNKEESTRGKSGALGAGSLWTEKHRPRKAADLSIPPKKVREVQQWLEGALGLVCEESGLRPGAHKGGGQKLLVVRGPAGVGKSAMVQVLAEALELPVLRWT------EETPWESRED--AKRKKWEGDEMAMGGGGRQYVSQAEGFRAFV-RGAAYGPLEMAPSAKAGLDRSRDAGDPNACGDWADPGAEGRRQGPKGERKGEDVRRALLVMEEVPYHATGRAAAHFQAALASFLAASVHPAVVIFTEEHEDRAGSGALERLLTRPLLHAKGVRQIHINPATDANMRRILTHIASAEGLG-------PSRSEVEAIVACSRGDLRHAILTLQLQLQGSRAAPNAPPRALARSDASASSSHLLRQCTGGRKGEGGRGGEDKGGEGRGGRRVGRRREGEEAER----KDTYMSSFHALGKVLHAKR-LPESDESRKGEGDP-------RGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGDVEELAEAMAFFADADVLLARVYSTAFHRDRTDATFPEEYVLSILGRTVAHSNR-HPAGGQGTGFRGMTAPRYFEVLRQRRETGRRLGLLCQDYVGKVARAGRASSIRMTVGEMVDEMVPFAKQIGMP 861
            ARPS + +N+ + +  +   P   K   T   + P + +++E              W + H+P   A+L++  KK+ EV+ W+            + P   KGG   +L++ GP+G GKSA VQVLA+ L   V  W+      E  P   R D    R+ ++ D       G    SQ   F+ F+ R   Y  L+M+                                   GE    D  R L+++E+ P +   R        L  F+     P + I ++     + S  L     + +    GV  I  NP    +M ++L+ I S + +        P ++ +E + + S GD+R AI +LQ      ++       A+ R  A+A+SS              GR       +   G+R  +  EG++ E     KD+ +  F ALGK+L+ KR  PE  E  +G   P       R RL   PE V++R  M  E  S ++Q + L  F DVE++A A  + +DAD L A   S +            EY  S+  R + HSN  H AG    GFR +  P +  V ++ RE        CQ      A      S  +T   +  E++P+  Q+  P
Sbjct:   53 ARPSSTDLNSSKRLRKRRADPNVSK-LQTSTSTEPAQGDQDEP-------------WVDTHKPHSQAELAVHKKKIEEVEDWMR---------VHVDPKTAKGGA--VLLLTGPSGCGKSATVQVLAQELGYRVQEWSNPSSLSEYRPSADRADPDTYRQTFDPDSRFNCFYGS---SQTGLFQEFLLRANKYNRLQMS-----------------------------------GEGGASDSDRKLILVEDFP-NQFYRQPGSLHDVLRRFVKTCRRPLLFIVSDSLSGDSSSRLL---FPKHIQEELGVCNISFNPVAPTSMMKVLSRIVSVQAVKSGGKMCVPDKAALELLCSGSSGDIRSAINSLQFSCLTDQSMKKGF-SAVERGKATATSS--------------GRAVV----KAMRGKRKAKDSEGQDKELAIGGKDSSLFLFRALGKILYCKRESPEGSEGSQGPSLPAHLSEHHRDRLLVDPEAVVERSHMSGEFFSLYLQQNYLEFFSDVEDVARASEYLSDADFLTAEWSSRSTM---------GEYGSSVATRGLLHSNSGHVAG----GFRPLHKPNWLLVNKKYREN-------CQ------AAQSLFISFCLTPVSLQTELLPYLAQLSNP 586          
The following BLAST results are available for this feature:
BLAST of EWM23144.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104025|gb|EWM23144.1|0.000e+0100.00Checkpoint protein Rad24 [Nannochloropsis gaditana... [more]
gi|224002336|ref|XP_002290840.1|1.318e-5127.65predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072230845|gb|OEU15578.1|2.029e-4226.76P-loop containing nucleoside triphosphate hydrolas... [more]
gi|1210529058|dbj|GAX12204.1|1.129e-3925.34cell cycle checkpoint protein [Fistulifera solaris... [more]
gi|765131538|ref|XP_011477992.1|4.454e-3225.58cell cycle checkpoint protein RAD17 [Oryzias latip... [more]
gi|1007788042|ref|XP_015830530.1|6.733e-3226.03PREDICTED: cell cycle checkpoint protein RAD17 iso... [more]
gi|1007788040|ref|XP_015830529.1|7.385e-3226.03PREDICTED: cell cycle checkpoint protein RAD17 iso... [more]
gi|1211247463|ref|XP_021477869.1|5.498e-3125.31cell cycle checkpoint protein RAD17 [Oncorhynchus ... [more]
gi|929245611|ref|XP_013998881.1|1.150e-3026.53PREDICTED: cell cycle checkpoint protein RAD17 [Sa... [more]
gi|1158835190|ref|XP_020326171.1|1.398e-3025.70cell cycle checkpoint protein RAD17 [Oncorhynchus ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7519rna7519Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications