EWM23198.1, cds7475 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23198.1
Unique Name	cds7475
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002472.1:90145..90536 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23198.1
Product	hypothetical protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_103743g1.2174.mrna
Gbkey	CDS
End range	.
End range	90536

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:90145..90536 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM23198.1 vs. NCBI_GenBank
Match: gi|585104095|gb|EWM23198.1| (hypothetical protein Naga_103743g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 253.832 bits (647), Expect = 2.392e-85
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0

Query:    1 MPGLFSGQARQAGEEAGKEEGIEVARPVQWKDGCSASWIGEELDGAGYSPVSPSSLEEAQPAPMSAGVCLSSFPPSCRPSLPSFLNQHLPVPPLERQTSGLLYHPSGNLPAGTSALASLPPSLPPSLPPPP 131
            MPGLFSGQARQAGEEAGKEEGIEVARPVQWKDGCSASWIGEELDGAGYSPVSPSSLEEAQPAPMSAGVCLSSFPPSCRPSLPSFLNQHLPVPPLERQTSGLLYHPSGNLPAGTSALASLPPSLPPSLPPPP
Sbjct:    1 MPGLFSGQARQAGEEAGKEEGIEVARPVQWKDGCSASWIGEELDGAGYSPVSPSSLEEAQPAPMSAGVCLSSFPPSCRPSLPSFLNQHLPVPPLERQTSGLLYHPSGNLPAGTSALASLPPSLPPSLPPPP 131

The following BLAST results are available for this feature:

BLAST of EWM23198.1 vs. NCBI_GenBank

BLAST of EWM23198.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585104095\|gb\|EWM23198.1\|	2.392e-85	100.00	hypothetical protein Naga_103743g1, partial [Nanno...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7493	rna7493	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications