EWM23202.1, cds7471 (CDS) Nannochloropsis gaditana

Overview
NameEWM23202.1
Unique Namecds7471
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:82765..83398 +
Alignment locationCM002472.1:83540..83783 +

Link to JBrowse

Properties
Property NameValue
End range.
End range83783
Protein idEWM23202.1
Productnadh-cytochrome b5 reductase
Partialtrue
Orig transcript idgnl|cribi|Naga_101434g2.4003.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:82765..83398 +
CM002472.1supercontigCM002472.1:83540..83783 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR017938Riboflavin_synthase-like_b-brl
IPR017927Fd_Rdtase_FAD-bd
IPR001433OxRdtase_FAD/NAD-bd
IPR008333OxRdtase_FAD-bd_dom
IPR001834NADH-Cyt_B5_reductase
Homology
BLAST of EWM23202.1 vs. NCBI_GenBank
Match: gi|585104102|gb|EWM23202.1| (nadh-cytochrome b5 reductase, partial [Nannochloropsis gaditana])

HSP 1 Score: 592.423 bits (1526), Expect = 0.000e+0
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
Query:    1 MNHTAHRRLHRLAACCQSLRGSHCQGADFFKGRSLSTGSKSSTDDITISKTTQTKDPLSPPPTPAASFPFSPNEWRRFPLVASADHTHDTKTMDVALPSPSTHPNLPVASCVLLALDSSSPTSPSPLSRPYTPISSPTAPGRLSFLIKAYRDGALSPRLHALQAGKDGVWIKGPFLKFKYSKNQFKSILMLAAGTGITPMVQCLHAIFSDPEDHTSVTLLVANRSPEDVLLLDWLDSLLAQHPGRLEVRHYLERLPSPPPSRHGPSWHAGFIDEGALRAAGAGREGGREGGR 292
            MNHTAHRRLHRLAACCQSLRGSHCQGADFFKGRSLSTGSKSSTDDITISKTTQTKDPLSPPPTPAASFPFSPNEWRRFPLVASADHTHDTKTMDVALPSPSTHPNLPVASCVLLALDSSSPTSPSPLSRPYTPISSPTAPGRLSFLIKAYRDGALSPRLHALQAGKDGVWIKGPFLKFKYSKNQFKSILMLAAGTGITPMVQCLHAIFSDPEDHTSVTLLVANRSPEDVLLLDWLDSLLAQHPGRLEVRHYLERLPSPPPSRHGPSWHAGFIDEGALRAAGAGREGGREGGR
Sbjct:    1 MNHTAHRRLHRLAACCQSLRGSHCQGADFFKGRSLSTGSKSSTDDITISKTTQTKDPLSPPPTPAASFPFSPNEWRRFPLVASADHTHDTKTMDVALPSPSTHPNLPVASCVLLALDSSSPTSPSPLSRPYTPISSPTAPGRLSFLIKAYRDGALSPRLHALQAGKDGVWIKGPFLKFKYSKNQFKSILMLAAGTGITPMVQCLHAIFSDPEDHTSVTLLVANRSPEDVLLLDWLDSLLAQHPGRLEVRHYLERLPSPPPSRHGPSWHAGFIDEGALRAAGAGREGGREGGR 292          
BLAST of EWM23202.1 vs. NCBI_GenBank
Match: gi|1026992816|ref|XP_016608009.1| (hypothetical protein SPPG_05344 [Spizellomyces punctatus DAOM BR117] >gi|907094127|gb|KNC99969.1| hypothetical protein SPPG_05344 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 149.443 bits (376), Expect = 1.852e-39
Identity = 80/207 (38.65%), Postives = 119/207 (57.49%), Query Frame = 0
Query:   78 FPLVASADHTHDTKTMDVALPSPSTHPNLPVASCVLLALDSSSPTS--PSPLSRPYTPISSPT--APGRLSFLIKAYRDGALSPRLHALQAGKDGVWIKGPFLKFKYSKNQFKSILMLAAGTGITPMVQCLHAIFSDPEDHTSVTLLVANRSPEDVLLLDWLDSLLAQHPGRLEVRHYLERLPSPPPSRHGPSWHAGFIDEGALRAA 280
            F L    D  H+TK    ALP  +T   LP ASCV+    +    +  P+ + RPYTP+  P     G    ++K Y +G +S  +H+L+ G D + +KGP  K++Y  N+F  I +LA GTGITPM+Q +  I S+P D T +TL+ AN + ED+LL D+ D+L  +HP + EVR+++E+   PP    G     G+I EG ++ A
Sbjct:   72 FVLKEVVDVNHNTKRFRFALPEGTTELGLPTASCVVTKYVNGVKENGKPNVVIRPYTPVEDPADGYTGYFDLIVKQYPNGPMSTHIHSLKPG-DTLDVKGPIKKYEYKANEFNHIGLLAGGTGITPMMQLIQRILSNPADKTKMTLVFANIAEEDILLKDYFDALAKKHPEQFEVRYFVEK---PPIGWRG---GVGYIGEGVIKEA 271          
BLAST of EWM23202.1 vs. NCBI_GenBank
Match: gi|1021798681|gb|KZO91239.1| (ferredoxin reductase-like C-terminal NADP-linked domain-containing protein [Calocera viscosa TUFC12733])

HSP 1 Score: 145.976 bits (367), Expect = 1.708e-38
Identity = 96/243 (39.51%), Postives = 132/243 (54.32%), Query Frame = 0
Query:   51 TTQTKDPLSPPPTPAASFPFSPNEWRRFPLVASADHTHDTKTMDVALPSPSTHPNLPVASCVLL--ALDSSSPTSPS--PLSRPYTPISSPTAPGRLSFLIKAYRDGALSPRLHALQAGKDGVWIKGPFLKFKYSKNQFKSILMLAAGTGITPMVQCLHAIFSDPEDHTSVTLLVANRSPEDVLLLDWLDSLLAQHPGRLEVRHYLERLPSPPPSRHGPSWHAGFIDEGALRAAGAGREGGRE 289
            TTQ K      PTP  S   + +E+R F L    ++ H+T      LP   T   LPVA+CVLL  A +   P      P++RPYTPIS     G + FLIK Y  G ++P L +LQ G D + IKGP  KF ++ NQF S+ ++A G+GITPM Q L    S P+DHT  TLL AN +  D+LL +  D+L  +HP RL V + L++   P     GP    G++ +  ++   AG E G +
Sbjct:    5 TTQAK------PTPTVS-ALNKDEFRVFELARKEEYNHNTSKYVFKLPE-GTATLLPVAACVLLKAADEEQGPKDQKGKPVARPYTPISESDREGEVDFLIKKYDTGKMTPYLASLQPG-DKMAIKGPLSKFPWTPNQFSSVGLIAGGSGITPMYQLLTHSLSLPDDHTKFTLLFANITSADILLKEEFDALQQKHPDRLSVVYVLDK---PDKGFTGPK---GYVTKELIKQHVAGPELGEK 232          
BLAST of EWM23202.1 vs. NCBI_GenBank
Match: gi|575471670|ref|XP_006675128.1| (hypothetical protein BATDEDRAFT_15558 [Batrachochytrium dendrobatidis JAM81] >gi|328773354|gb|EGF83391.1| hypothetical protein BATDEDRAFT_15558 [Batrachochytrium dendrobatidis JAM81] >gi|1028568613|gb|OAJ36917.1| hypothetical protein BDEG_21017 [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 145.976 bits (367), Expect = 1.172e-37
Identity = 85/221 (38.46%), Postives = 118/221 (53.39%), Query Frame = 0
Query:   72 PNEWRRFPLVASADHTHDTKTMDVALPSPSTHPNLPVASCVLLALDS--SSPTSPSPLSRPYTPISSPTA--PGRLSFLIKAYRDGALSPRLHALQAGKDGVWIKGPFLKFKYSKNQFKSILMLAAGTGITPMVQCLHAIFSDPEDHTSVTLLVANRSPEDVLLLDWLDSLLAQHPGRLEVRHYLERLPSPPPSRHGPSWHAGFIDEGALR----AAGAGR 284
            P  ++ F +    D  H+TK +  ALP  +T   L  ASC              P  + RPYTP+  P     G    L+K Y DG +S  LH+ Q G D V IKGPF KF+Y  N+FK I M+A G+GITPMVQ +  I SDP D T V+L+ AN + +D+ L  +LD L  +HPG++ V H L++ P+      G    +G++ E  L+    A G G+
Sbjct:  101 PTTFKPFTVREIVDVNHNTKILRFALPEEATELGLKAASCCTTKFVKGLKEDGKPDVVIRPYTPLEDPAKGYTGYFDMLVKKYPDGVMSSYLHSRQVG-DVVEIKGPFSKFEYKANEFKHIGMVAGGSGITPMVQVIQKILSDPTDKTKVSLIFANVTEDDIPLRPYLDKLAKEHPGQINVFHTLDKPPA------GWQQGSGYVSEDMLKKHMPAPGQGK 314          
BLAST of EWM23202.1 vs. NCBI_GenBank
Match: gi|1149600593|gb|OON07949.1| (hypothetical protein BSLG_02686 [Batrachochytrium salamandrivorans])

HSP 1 Score: 145.206 bits (365), Expect = 3.959e-37
Identity = 82/213 (38.50%), Postives = 117/213 (54.93%), Query Frame = 0
Query:   72 PNEWRRFPLVASADHTHDTKTMDVALPSPSTHPNLPVASCVLLAL--DSSSPTSPSPLSRPYTPISSPTA--PGRLSFLIKAYRDGALSPRLHALQAGKDGVWIKGPFLKFKYSKNQFKSILMLAAGTGITPMVQCLHAIFSDPEDHTSVTLLVANRSPEDVLLLDWLDSLLAQHPGRLEVRHYLERLPSPPPSRHGPSWH--AGFIDEGALR 278
            P+ ++ F + +  D  H+TK +  ALP  +T   L  ASC +  +     S   P+ + RPYTPI  P+    G    L+K Y DG +S  LHA + G D V  KGPF+KF+Y  N    I M+A GTGI PM+Q +  I SDP D T V+L+ AN + ED+LL  +LD L  +HP ++ V H L++ P        P W   +GF+ +  L+
Sbjct:  126 PSAFKPFTVQSVVDVNHNTKILRFALPEEATELGLKTASCFVTKVVHGVKSDGKPNVVIRPYTPIEDPSMGYTGTFDLLVKRYPDGIMSSHLHAQKPG-DVVEFKGPFVKFEYKPNTLGHIGMVAGGTGIAPMLQVIQRILSDPTDTTKVSLVFANIAEEDILLRSYLDKLAKEHPNQISVYHTLDKTP--------PGWTQGSGFVSQEMLK 329          
BLAST of EWM23202.1 vs. NCBI_GenBank
Match: gi|385303263|gb|EIF47349.1| (nadh-cytochrome b5 reductase [Brettanomyces bruxellensis AWRI1499])

HSP 1 Score: 142.51 bits (358), Expect = 5.142e-37
Identity = 72/210 (34.29%), Postives = 112/210 (53.33%), Query Frame = 0
Query:   74 EWRRFPLVASADHTHDTKTMDVALPSPSTHPNLPVASCVLLALDSSSPTSPSPLSRPYTPISSPTAPGRLSFLIKAYRDGALSPRLHALQAGKDGVWIKGPFLKFKYSKNQFKSILMLAAGTGITPMVQCLHAIFSDPEDHTSVTLLVANRSPEDVLLLDWLDSLLAQHPGRLEVRHYLERLPSPPPSRHGPSWHAGFIDEGALRAAGAG 283
            EW    L A  D +HD + +    P+  +   L  ASC+L    +      S + RPYTPIS     G    LIK Y DG ++  +  L+   D +  KGP LK+K+  NQF+ I ++  G+GITP+ Q +H +  + ED T + LL  N++P D+LL   LD L  QHPG+ EV++++++  +    +       G+ID+ AL++   G
Sbjct:   40 EWVDLKLKAIXDVSHDARLLTFEFPNKLSTSGLVTASCILAKFVTDKG---SNVVRPYTPISDTKQKGSFDLLIKKYEDGKMTNHIFGLKPS-DTLSFKGPILKWKWEPNQFQEITLIGGGSGITPLYQLIHEVLKNKEDKTKINLLFGNKTPSDILLKPELDKLAKQHPGQFEVKYFVDKAENEFDGK------VGYIDKDALKSVLKG 239          
BLAST of EWM23202.1 vs. NCBI_GenBank
Match: gi|470426307|ref|XP_004337883.1| (oxidoreductase NADbinding domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440794715|gb|ELR15870.1| oxidoreductase NADbinding domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 144.436 bits (363), Expect = 5.991e-37
Identity = 83/210 (39.52%), Postives = 123/210 (58.57%), Query Frame = 0
Query:   70 FSPNEWRRFPLVASADHTHDTKTMDVALPSPSTHPNLPVASCVLLALDSSSPTSPSPLSRPYTPISSPTA-PGRLSFLIKAYRDGALSPRLHALQAGKDGVWIKGPFLKFKYSKNQFKSILMLAAGTGITPMVQCLHAIFSDPEDHTSVTLLVANRSPEDVLLLDWLDSLLAQHPGRLEVRHYLERLPSPPPSRHGPSWHAGFIDEGALR 278
             + +E+R F LV   D T +T+ +  ALPS      LPVASCV+   +     +  P+ RPYTP+++  +  G   F+IK Y  G +S  ++ L+ G + + +KGP  K  YSKN  K + MLA GTGITPM+Q L  + S+ +D T V+L+ AN + +D++L D LD+L  +HP RLEV HY+   P+   S  G   H GFI+   ++
Sbjct:  121 LNKDEFREFELVEVEDLTPNTRRLRFALPSRDHVLGLPVASCVVTKANIGE--NGKPVIRPYTPVTNDKSDKGYFDFVIKDYPTGVMSSHIYHLKKG-EKLQVKGPIPKLAYSKNMKKHLGMLAGGTGITPMLQVLEEVLSEDDDKTHVSLVFANNTEQDIILKDRLDALAKKHPNRLEV-HYVVAQPADAASWKG---HTGFINADIIK 323          
BLAST of EWM23202.1 vs. NCBI_GenBank
Match: gi|1000779484|gb|KXN70710.1| (ferredoxin reductase-like protein, partial [Conidiobolus coronatus NRRL 28638])

HSP 1 Score: 140.584 bits (353), Expect = 9.352e-37
Identity = 76/217 (35.02%), Postives = 116/217 (53.46%), Query Frame = 0
Query:   70 FSPNEWRRFPLVASADHTHDTKTMDVALPSPSTHPNLPVASCVLLALDSSSP-TSPSPLSRPYTPISSPTAPGRLSFLIKAYRDGALSPRLHALQAGKDGVWIKGPFLKFKYSKNQFKSILMLAAGTGITPMVQCLHAIFSDPEDHTSVTLLVANRSPEDVLLLDWLDSLLAQHPGRLEVRHYLERLPSPPPSRHGPSW--HAGFIDEGALRAAGAG 283
              P E++ F L      +HDTK     LP P ++  LP+ASCVL    + +P      + RPYTP S  T  G   F+IK Y  G +S  +H+L+ G D + +KGPF K+ Y+ N    I ++A GTGITPM+Q +  +  +P+D T +  + ANR+ +D+LL D LD L  QHP R ++++ +        S   P W    G +++  ++    G
Sbjct:    2 LDPKEFKAFKLKEIQSISHDTKLFRFELP-PDSNLGLPIASCVL----TKAPGKDGKDVMRPYTPTSRETDRGYFDFIIKRYESGTMSKHIHSLKVG-DTLEVKGPFPKYPYTANTHSEIGLIAGGTGITPMLQLIRKVLDNPQDKTKINFIFANRTTKDILLKDELDKLAKQHPDRFKIKYII--------SNKEPGWSGDVGHVNKDMIKNTLKG 204          
BLAST of EWM23202.1 vs. NCBI_GenBank
Match: gi|729435998|ref|XP_010520587.1| (PREDICTED: NADH-cytochrome b5 reductase-like protein [Tarenaya hassleriana])

HSP 1 Score: 142.124 bits (357), Expect = 1.744e-36
Identity = 82/203 (40.39%), Postives = 116/203 (57.14%), Query Frame = 0
Query:   70 FSPNEWRRFPLVASADHTHDTKTMDVALPSPSTHPNLPVASCVLLA--LDSSSPTSPSPLSRPYTPISSPTAPGRLSFLIKAYRDGALSPRLHALQAGKDGVWIKGPFLKFKYSKNQFKSILMLAAGTGITPMVQCLHAIFSDPEDHTSVTLLVANRSPEDVLLLDWLDSLLAQHPGRLEVRHYLERLPSPPPSRHGPSWHAG 270
              P++W  F L  +A  +H+T+    +   PS    L VASC++    +   S   P  + RPYTPIS P A G    LIK Y +G +S    +L+ G D V +KGP  KFKYS N  ++I M+A GTGITPM+Q + AI  +PED T ++LL  N SP+D+LL   LD+L A+HP  L+V + ++      P++   SW  G
Sbjct:   73 LKPDKWNEFKLQDTARVSHNTQLFRFSF-DPSAKLGLEVASCIVTRAPVGYDSEGKPKYVIRPYTPISDPEAKGYFDLLIKVYPEGKMSQHFASLKPG-DVVEVKGPIEKFKYSPNMKRNIGMIAGGTGITPMLQVIEAILKNPEDKTQISLLYGNVSPDDILLKQKLDALQAKHP-NLKVYYTVDN-----PTK---SWKGG 264          
BLAST of EWM23202.1 vs. NCBI_GenBank
Match: gi|1124038875|ref|XP_019577617.1| (PREDICTED: NADH-cytochrome b5 reductase-like protein [Rhinolophus sinicus])

HSP 1 Score: 141.739 bits (356), Expect = 2.001e-36
Identity = 82/187 (43.85%), Postives = 112/187 (59.89%), Query Frame = 0
Query:   70 FSPNEWRRFPLVASADHTHDTKTMDVALPSPSTHPNLPVASCVLLA--LDSSSPTSPSPLSRPYTPISSPTAPGRLSFLIKAYRDGALSPRLHALQAGKDGVWIKGPFLKFKYSKNQFKSILMLAAGTGITPMVQCLHAIFSDPEDHTSVTLLVANRSPEDVLLLDWLDSLLAQHPGRLEVRHYLER 254
             +P++W  F L  +A  +H+TK    +   PST+  L VASC+L    L  ++      + RPYTPIS P A G    LIK Y DG +S    +L+ G D + +KGP  KFKYS N  K I M+A G+GITPM+Q + AI  +PED+T +TLL AN SP+D+LL   LD L A HP  L+V + ++ 
Sbjct:   73 LNPDKWLEFKLQDTATVSHNTKLFRFSF-DPSTNLGLHVASCLLTRAPLGYNAEGKTKYVVRPYTPISDPEAKGYFDLLIKVYPDGKMSQHFASLKPG-DVLEVKGPVEKFKYSPNMKKHIGMIAGGSGITPMLQVIDAILKNPEDNTQITLLYANVSPDDILLKQKLDVLQANHP-NLKVFYTVDN 256          
The following BLAST results are available for this feature:
BLAST of EWM23202.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104102|gb|EWM23202.1|0.000e+0100.00nadh-cytochrome b5 reductase, partial [Nannochloro... [more]
gi|1026992816|ref|XP_016608009.1|1.852e-3938.65hypothetical protein SPPG_05344 [Spizellomyces pun... [more]
gi|1021798681|gb|KZO91239.1|1.708e-3839.51ferredoxin reductase-like C-terminal NADP-linked d... [more]
gi|575471670|ref|XP_006675128.1|1.172e-3738.46hypothetical protein BATDEDRAFT_15558 [Batrachochy... [more]
gi|1149600593|gb|OON07949.1|3.959e-3738.50hypothetical protein BSLG_02686 [Batrachochytrium ... [more]
gi|385303263|gb|EIF47349.1|5.142e-3734.29nadh-cytochrome b5 reductase [Brettanomyces bruxel... [more]
gi|470426307|ref|XP_004337883.1|5.991e-3739.52oxidoreductase NADbinding domain containing protei... [more]
gi|1000779484|gb|KXN70710.1|9.352e-3735.02ferredoxin reductase-like protein, partial [Conidi... [more]
gi|729435998|ref|XP_010520587.1|1.744e-3640.39PREDICTED: NADH-cytochrome b5 reductase-like prote... [more]
gi|1124038875|ref|XP_019577617.1|2.001e-3643.85PREDICTED: NADH-cytochrome b5 reductase-like prote... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7489rna7489Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications