EWM23211.1, cds7462 (CDS) Nannochloropsis gaditana

Overview
NameEWM23211.1
Unique Namecds7462
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:60947..61017 +
Alignment locationCM002472.1:61132..61190 +
Alignment locationCM002472.1:61365..61579 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23211.1
ProductEXS domaina containing protein
Orig transcript idgnl|cribi|Naga_102676g1.5884.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:60947..61017 +
CM002472.1supercontigCM002472.1:61132..61190 +
CM002472.1supercontigCM002472.1:61365..61579 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR004342EXS_C
Homology
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BLAST of EWM23211.1 vs. NCBI_GenBank
Match: gi|585104126|gb|EWM23211.1| (EXS domaina containing protein [Nannochloropsis gaditana])

HSP 1 Score: 223.016 bits (567), Expect = 1.094e-73
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 
Query:    1 MWVPHPHVFPVLLFCGVMLYIARRLNPIVQFKALLRNTLFAPFAPVSFRDALVGDLLTSLPLAFVDLAYSLSFSFYWLATLFSPRGRYPSLHPSLPPPLPSSCSSPIDLSLYHH 114
            MWVPHPHVFPVLLFCGVMLYIARRLNPIVQFKALLRNTLFAPFAPVSFRDALVGDLLTSLPLAFVDLAYSLSFSFYWLATLFSPRGRYPSLHPSLPPPLPSSCSSPIDLSLYHH
Sbjct:    1 MWVPHPHVFPVLLFCGVMLYIARRLNPIVQFKALLRNTLFAPFAPVSFRDALVGDLLTSLPLAFVDLAYSLSFSFYWLATLFSPRGRYPSLHPSLPPPLPSSCSSPIDLSLYHH 114
The following BLAST results are available for this feature:
BLAST of EWM23211.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585104126|gb|EWM23211.1|1.094e-73100.00EXS domaina containing protein [Nannochloropsis ga... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7480rna7480Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications