EWM30599.1, cds74 (CDS) Nannochloropsis gaditana

Overview
NameEWM30599.1
Unique Namecds74
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:208128..208284 -
Alignment locationCM002455.1:207410..207783 -
Alignment locationCM002455.1:206577..207179 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30599.1
Productcore-2 i-branching enzyme
Orig transcript idgnl|cribi|Naga_100129g19.1877.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:208128..208284 -
CM002455.1supercontigCM002455.1:207410..207783 -
CM002455.1supercontigCM002455.1:206577..207179 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008375acetylglucosaminyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003406Glyco_trans_14
Homology
BLAST of EWM30599.1 vs. NCBI_GenBank
Match: gi|585113271|gb|EWM30599.1| (core-2 i-branching enzyme [Nannochloropsis gaditana])

HSP 1 Score: 782.711 bits (2020), Expect = 0.000e+0
Identity = 377/377 (100.00%), Postives = 377/377 (100.00%), Query Frame = 0
Query:    1 MAQWNTGTDMITSYLGRATIFWRTASLLLLFLSGDGQLFVHRSANYKGTCRADTLSNVSYKEVGLVDRPSPGKVAYGVMVYQRQNKTVSDVFDQFTRLFDAIYSPNFTCVVHVDIKSEPALIEKITDYVKKHAPQASTIPSVSVSWGGITVVERTLALMQAALESDPEWEYFVNIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGHDFFGQWEHHEGRVSKVFVDMFDGRSREVRGLPRSPPKVRQGHMHMHQYLYNVSFPLSLSHYAHLHASLHDRNTLSTRASSKPSSPAPLWSPPCMPPSPVGSFCTSPRPKRRMRYSSPHSSTSLPTVPTLPAPPAIAPFISPTGSARGAVGTPSTSPHCTCPCSWKK 377
            MAQWNTGTDMITSYLGRATIFWRTASLLLLFLSGDGQLFVHRSANYKGTCRADTLSNVSYKEVGLVDRPSPGKVAYGVMVYQRQNKTVSDVFDQFTRLFDAIYSPNFTCVVHVDIKSEPALIEKITDYVKKHAPQASTIPSVSVSWGGITVVERTLALMQAALESDPEWEYFVNIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGHDFFGQWEHHEGRVSKVFVDMFDGRSREVRGLPRSPPKVRQGHMHMHQYLYNVSFPLSLSHYAHLHASLHDRNTLSTRASSKPSSPAPLWSPPCMPPSPVGSFCTSPRPKRRMRYSSPHSSTSLPTVPTLPAPPAIAPFISPTGSARGAVGTPSTSPHCTCPCSWKK
Sbjct:    1 MAQWNTGTDMITSYLGRATIFWRTASLLLLFLSGDGQLFVHRSANYKGTCRADTLSNVSYKEVGLVDRPSPGKVAYGVMVYQRQNKTVSDVFDQFTRLFDAIYSPNFTCVVHVDIKSEPALIEKITDYVKKHAPQASTIPSVSVSWGGITVVERTLALMQAALESDPEWEYFVNIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGHDFFGQWEHHEGRVSKVFVDMFDGRSREVRGLPRSPPKVRQGHMHMHQYLYNVSFPLSLSHYAHLHASLHDRNTLSTRASSKPSSPAPLWSPPCMPPSPVGSFCTSPRPKRRMRYSSPHSSTSLPTVPTLPAPPAIAPFISPTGSARGAVGTPSTSPHCTCPCSWKK 377          
BLAST of EWM30599.1 vs. NCBI_GenBank
Match: gi|1086562904|emb|SDR05123.1| (Core-2/I-Branching enzyme [Chryseobacterium soldanellicola])

HSP 1 Score: 92.8189 bits (229), Expect = 1.387e-17
Identity = 44/115 (38.26%), Postives = 71/115 (61.74%), Query Frame = 0
Query:   93 DQFTRLFDAIYSPNFTCVVHVDIKSEPALIEKITDYVKKHAPQASTIPSVSVSWGGITVVERTLALMQAALESDPEWEYFVNIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWD 207
            DQF +LF AIY P+   ++H+D K+   + E++TD++K + P A  + S +V WGG ++V+  L  M+  LE D  W+YF+N+  +DYPL+S   I+E+L+       N+I   D
Sbjct:   35 DQFKKLFKAIYEPSNFYLIHIDKKASEQIGEEVTDFLKNY-PNAHILKSENVIWGGYSMVQAELDGMKYLLEMDTRWDYFINLSGQDYPLKSQKIIREFLSQN--NGKNYIKVVD 146          
BLAST of EWM30599.1 vs. NCBI_GenBank
Match: gi|917616973|ref|WP_052186039.1| (glycosyl transferase [Chryseobacterium sp. YR460])

HSP 1 Score: 88.1965 bits (217), Expect = 3.872e-16
Identity = 42/125 (33.60%), Postives = 75/125 (60.00%), Query Frame = 0
Query:   70 SPGKVAYGVMVYQRQNKTVSDVFDQFTRLFDAIYSPNFTCVVHVDIKSEPALIEKITDYVKKHAPQASTIPSVSVSWGGITVVERTLALMQAALESDPEWEYFVNIGQEDYPLQSPAAIQEYLAH 194
             P  +AY ++V++  N        QF +LF AIY  +   ++H+D K+   + E++TD++ K+ P    + S +V WGG ++V+  L  M+  LE D +W+YF+N+  +DYPL+S   I+++L+ 
Sbjct:    2 KPINIAYLILVHRLPN--------QFKKLFKAIYDSSNFYLIHIDKKANEQIGEEVTDFLNKY-PNVHILKSENVIWGGYSMVQAELDGMKYLLEMDAKWDYFINLSGQDYPLKSQKIIKDFLSQ 117          
BLAST of EWM30599.1 vs. NCBI_GenBank
Match: gi|1094962520|emb|SER86473.1| (Core-2/I-Branching enzyme [Sphingobium sp. YR768])

HSP 1 Score: 87.8113 bits (216), Expect = 6.321e-16
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 0
Query:   93 DQFTRLFDAIYSPNFTCVVHVDIKSEPALIEKITDYVKKHAPQASTIPSVSVSWGGITVVERTLALMQAALESDPEWEYFVNIGQEDYPLQSPAAIQEYLA 193
            +QF R+F AIY P    ++HVD++S P +I  I  ++K +A   + +PS  + WGG ++V+  L  M   LE + +W YF+N+  +D+PL+S A I  YLA
Sbjct:   13 EQFKRMFRAIYVPGNQYLIHVDLRSGPKMIADIAAFLKPYA-NVAMLPSRKMLWGGYSLVDAELRGMAKLLEMNADWRYFINLSGQDFPLKSQAYIANYLA 112          
BLAST of EWM30599.1 vs. NCBI_GenBank
Match: gi|1209258957|ref|WP_088309206.1| (glycosyl transferase [Novosphingobium sp. B 225])

HSP 1 Score: 87.4261 bits (215), Expect = 8.149e-16
Identity = 48/140 (34.29%), Postives = 78/140 (55.71%), Query Frame = 0
Query:   93 DQFTRLFDAIYSPNFTCVVHVDIKSEPALIEKITDYVKKHAPQASTIPSVSVSWGGITVVERTLALMQAALESDPEWEYFVNIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGHDFFGQWEHHEGRVSKVFVDMF 232
            +QF R+F AI++P    +VH+D  S  AL   I +++K + P+A  +PS    WGG ++V+  L  MQ  L+   EW++++N+  +D+PL+S   I+++L  A  P T FI     R  D          RV  VF+++F
Sbjct:   13 EQFKRMFKAIHAPGNRYLVHIDKSSGKALAADIAEFLKSY-PEAEILPSRRALWGGFSLVDAELRGMQHLLDGSTEWQHYINLSGQDFPLKSQGYIRDFL--AAHPGTQFI-----RYADQLLVRPDTMNRVQSVFLELF 144          
BLAST of EWM30599.1 vs. NCBI_GenBank
Match: gi|569548919|gb|AHE50540.1| (glycosyl transferase family protein [Aeromonas hydrophila 4AK4])

HSP 1 Score: 87.0409 bits (214), Expect = 9.071e-16
Identity = 44/119 (36.97%), Postives = 71/119 (59.66%), Query Frame = 0
Query:   93 DQFTRLFDAIYSPNFTCVVHVDIKSEPALIEKITDYVKKHAPQASTIPSVSVSWGGITVVERTLALMQAALESDPEWEYFVNIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGH 211
            DQF RLF AIY  +   ++HVD +S P L ++I D++  + P A+ +PS +  WGG ++V+  L  + A LE + EWE+F+N+  +D+PL+S   I ++L        +F+   D R H
Sbjct:   13 DQFKRLFRAIYHHSNHYLIHVDKRSGPELQQEIADFLTDY-PNAAMLPSKNALWGGYSLVDAELRGIAALLEQNQEWEFFINLSAQDFPLRSQRDIHDFLRDH--RGKDFLKVADQRQH 128          
BLAST of EWM30599.1 vs. NCBI_GenBank
Match: gi|1175325694|ref|WP_081873487.1| (glycosyl transferase [Sphingobium chlorophenolicum] >gi|662352864|gb|KEQ51367.1| putative Glycosyl transferase [Sphingobium chlorophenolicum])

HSP 1 Score: 87.4261 bits (215), Expect = 9.683e-16
Identity = 52/156 (33.33%), Postives = 83/156 (53.21%), Query Frame = 0
Query:   93 DQFTRLFDAIYSPNFTCVVHVDIKSEPALIEKITDYVKKHAPQASTIPSVSVSWGGITVVERTLALMQAALESDPEWEYFVNIGQEDYPLQSPAAIQEYL-AHAVPPATNFIYCWDLRGHDFFGQWEHHEGRVSKVFVDMFDG--RSREVRGLPRS 245
            +QF R+F AIY+P    ++H+D  S  AL +++  ++  +      +P+  V WGG ++VE  L  M+  LE D  W +F+N+  +D+PL+S   I++YL AH   P T F+ C D               RVS +F+++F    R+R  R  PR 
Sbjct:   13 EQFKRMFQAIYAPGNIYLIHIDRNSGKALAQELEAFLAPYQG-VEILPARRVLWGGYSLVEAELRGMRRLLEMDAGWTHFINLSGQDFPLKSQGYIRDYLSAH---PNTQFMRCADQ-----LAIRPDTMNRVSHLFIEVFRRIFRTRIARAFPRG 159          
BLAST of EWM30599.1 vs. NCBI_GenBank
Match: gi|918397099|ref|WP_052449374.1| (glycosyl transferase [Aeromonas popoffii])

HSP 1 Score: 86.6557 bits (213), Expect = 1.476e-15
Identity = 44/119 (36.97%), Postives = 70/119 (58.82%), Query Frame = 0
Query:   93 DQFTRLFDAIYSPNFTCVVHVDIKSEPALIEKITDYVKKHAPQASTIPSVSVSWGGITVVERTLALMQAALESDPEWEYFVNIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGH 211
            DQF RLF AIY  +   ++HVD  S P L ++IT ++  + P A  +PS +  WGG ++V+  L  + A LE + EWE+F+N+  +D+PL+S + I ++L        +F+   D R H
Sbjct:   13 DQFKRLFKAIYHDSNHYLIHVDKSSGPELQQEITRFLADY-PNAGMLPSKNALWGGYSLVDAELRGIAALLEQNKEWEFFINLSAQDFPLRSQSDIHDFLRDH--KGKDFLKVADQRQH 128          
BLAST of EWM30599.1 vs. NCBI_GenBank
Match: gi|918393422|ref|WP_052445697.1| (glycosyl transferase [Aeromonas encheleia])

HSP 1 Score: 86.2705 bits (212), Expect = 1.519e-15
Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = 0
Query:   94 QFTRLFDAIYSPNFTCVVHVDIKSEPALIEKITDYVKKHAPQASTIPSVSVSWGGITVVERTLALMQAALESDPEWEYFVNIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGH 211
            QF RLF AIY  +   ++HVD +S P L ++I D++  + P A+ +PS +  WGG ++V+  L  + A LE + EWE+F+N+  +D+PL+S   I ++L        +F+   D R H
Sbjct:   14 QFKRLFKAIYHDSNHYLIHVDKRSGPELQQEIADFLADY-PNAAMLPSKNALWGGYSLVDAELRGIAALLEQNKEWEFFINLSAQDFPLRSQHDIHDFLRDH--KGKDFLKVADQRQH 128          
BLAST of EWM30599.1 vs. NCBI_GenBank
Match: gi|1172291926|ref|WP_080675205.1| (glycosyl transferase [Aeromonas hydrophila])

HSP 1 Score: 87.4261 bits (215), Expect = 1.595e-15
Identity = 46/131 (35.11%), Postives = 73/131 (55.73%), Query Frame = 0
Query:   93 DQFTRLFDAIYSPNFTCVVHVDIKSEPALIEKITDYVKKHAPQASTIPSVSVSWGGITVVERTLALMQAALESDPEWEYFVNIGQEDYPLQSPAAIQEYLAHAVPPATNFIYCWDLRGHDFFGQWEHHEGR 223
            DQF RLF AIY  +   ++HVD +S P L ++I D++  + P A+ +PS +  WGG ++V+  L  + A LE + EWE+F+N+  +D+PL+S   I ++L              D RG DF    +  + R
Sbjct:   79 DQFKRLFRAIYHHSNHYLIHVDKRSGPELQQEIADFLTDY-PNAAMLPSKNALWGGYSLVDAELRGIAALLEQNQEWEFFINLSAQDFPLRSQRDIHDFLR-------------DHRGKDFLKVADQRQHR 195          
The following BLAST results are available for this feature:
BLAST of EWM30599.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113271|gb|EWM30599.1|0.000e+0100.00core-2 i-branching enzyme [Nannochloropsis gaditan... [more]
gi|1086562904|emb|SDR05123.1|1.387e-1738.26Core-2/I-Branching enzyme [Chryseobacterium soldan... [more]
gi|917616973|ref|WP_052186039.1|3.872e-1633.60glycosyl transferase [Chryseobacterium sp. YR460][more]
gi|1094962520|emb|SER86473.1|6.321e-1639.60Core-2/I-Branching enzyme [Sphingobium sp. YR768][more]
gi|1209258957|ref|WP_088309206.1|8.149e-1634.29glycosyl transferase [Novosphingobium sp. B 225][more]
gi|569548919|gb|AHE50540.1|9.071e-1636.97glycosyl transferase family protein [Aeromonas hyd... [more]
gi|1175325694|ref|WP_081873487.1|9.683e-1633.33glycosyl transferase [Sphingobium chlorophenolicum... [more]
gi|918397099|ref|WP_052449374.1|1.476e-1536.97glycosyl transferase [Aeromonas popoffii][more]
gi|918393422|ref|WP_052445697.1|1.519e-1536.44glycosyl transferase [Aeromonas encheleia][more]
gi|1172291926|ref|WP_080675205.1|1.595e-1535.11glycosyl transferase [Aeromonas hydrophila][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna74rna74Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications