EWM29935.1, cds736 (CDS) Nannochloropsis gaditana

Overview
NameEWM29935.1
Unique Namecds736
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:289739..289801 -
Alignment locationCM002456.1:289008..289643 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29935.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100351g7.7476.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:289739..289801 -
CM002456.1supercontigCM002456.1:289008..289643 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM29935.1 vs. NCBI_GenBank
Match: gi|585112521|gb|EWM29935.1| (hypothetical protein Naga_100351g7 [Nannochloropsis gaditana])

HSP 1 Score: 452.595 bits (1163), Expect = 1.145e-160
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0 
Query:    1 MVGRGMTRTMKKRGKSPRGLWAIFFLVLALASLASLVSLTYQRIRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLPRPMGNRGGREGGRECGHGRGGGGDRRRVEEVSEAEAATLTRRRWQEMERRQVEGGARRRGEEEGEDEEEEEEEEEEEEEETTASETSEEGDEEGGGSTREGAGV 232
            MVGRGMTRTMKKRGKSPRGLWAIFFLVLALASLASLVSLTYQRIRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLPRPMGNRGGREGGRECGHGRGGGGDRRRVEEVSEAEAATLTRRRWQEMERRQVEGGARRRGEEEGEDEEEEEEEEEEEEEETTASETSEEGDEEGGGSTREGAGV
Sbjct:    1 MVGRGMTRTMKKRGKSPRGLWAIFFLVLALASLASLVSLTYQRIRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLPRPMGNRGGREGGRECGHGRGGGGDRRRVEEVSEAEAATLTRRRWQEMERRQVEGGARRRGEEEGEDEEEEEEEEEEEEEETTASETSEEGDEEGGGSTREGAGV 232
[Close]
BLAST of EWM29935.1 vs. NCBI_GenBank
Match: gi|553183289|ref|XP_005853869.1| (hypothetical protein NGA_0452500 [Nannochloropsis gaditana CCMP526] >gi|422295191|gb|EKU22490.1| hypothetical protein NGA_0452500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 391.734 bits (1005), Expect = 3.576e-131
Identity = 204/211 (96.68%), Postives = 207/211 (98.10%), Query Frame = 0 
Query:   22 AIFFLVLALASLASLVSLTYQRIRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLPRPMGNRGGREGGRECGHGRGGGGDRRRVEEVSEAEAATLTRRRWQEMERRQVEGGARRRGEEEGEDEEEEEEEEEEEEEETTASETSEEGDEEGGGSTREGAGV 232
            AIFFLVLALASLASLVSLTYQRIRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLPRPMGNRGGREGGRECGHGRGGGGDRRRVEEVSEAEAATLTRRRWQEMERRQ+EGGARRRGEEEGED EEEEEEEEEEEEETTASETSEEG +EGG +TREGAG 
Sbjct:  136 AIFFLVLALASLASLVSLTYQRIRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLPRPMGNRGGREGGRECGHGRGGGGDRRRVEEVSEAEAATLTRRRWQEMERRQLEGGARRRGEEEGED-EEEEEEEEEEEEETTASETSEEGMKEGGAATREGAGA 345
[Close]
BLAST of EWM29935.1 vs. NCBI_GenBank
Match: gi|675204243|ref|XP_008911006.1| (hypothetical protein PPTG_15974 [Phytophthora parasitica INRA-310] >gi|568088925|gb|ETN03779.1| hypothetical protein PPTG_15974 [Phytophthora parasitica INRA-310])

HSP 1 Score: 76.6406 bits (187), Expect = 5.286e-13
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 0 
Query:   44 IRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLP 128
            +R RG++ +LP S Q LL+ TSLL+WL D+S +D++ P+    L L   E+  L+  +PP  Q  +T PG+L +LP  VQ  LLP
Sbjct:    1 MRTRGLVGFLPKSLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNVLLP 85
[Close]
BLAST of EWM29935.1 vs. NCBI_GenBank
Match: gi|695380446|ref|XP_009516811.1| (hypothetical protein PHYSODRAFT_476527, partial [Phytophthora sojae] >gi|348689722|gb|EGZ29536.1| hypothetical protein PHYSODRAFT_476527, partial [Phytophthora sojae])

HSP 1 Score: 75.485 bits (184), Expect = 2.223e-12
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 0 
Query:   45 RDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLP 128
            R RG++ +LP S Q LL+ TSLL WL D+S +D++ P+    L L+  E+  L+  +PP  Q  LT PG+L +LP  +Q  LLP
Sbjct:   27 RTRGLIGFLPQSAQELLLQTSLLKWLTDTSFSDKVAPFLPFLLPLSRAEQMRLMEQMPPESQMMLTKPGLLPLLPDSMQKVLLP 110
[Close]
BLAST of EWM29935.1 vs. NCBI_GenBank
Match: gi|567953693|gb|ETK79339.1| (hypothetical protein L915_14799, partial [Phytophthora parasitica] >gi|567982330|gb|ETL32751.1| hypothetical protein L916_14713, partial [Phytophthora parasitica] >gi|570943811|gb|ETP09068.1| hypothetical protein F441_15068, partial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 75.485 bits (184), Expect = 3.148e-12
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 0 
Query:   28 LALASLASLVSLT------YQR-IRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLP 128
            LA ASL  L S +      YQ  +R RG++ +LP S Q LL+ TSLL+WL D+S +D++ P+    L L   E+  L+  +PP  Q  +T PG+L +LP  VQ  LLP
Sbjct:  140 LAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPESLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNVLLP 247
[Close]
BLAST of EWM29935.1 vs. NCBI_GenBank
Match: gi|970618868|gb|KUF66913.1| (hypothetical protein AM587_10016189 [Phytophthora nicotianae])

HSP 1 Score: 75.485 bits (184), Expect = 3.322e-12
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 0 
Query:   28 LALASLASLVSLT------YQR-IRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLP 128
            LA ASL  L S +      YQ  +R RG++ +LP S Q LL+ TSLL+WL D+S +D++ P+    L L   E+  L+  +PP  Q  +T PG+L +LP  VQ  LLP
Sbjct:  138 LAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPESLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNVLLP 245
[Close]
BLAST of EWM29935.1 vs. NCBI_GenBank
Match: gi|568011840|gb|ETL86018.1| (hypothetical protein L917_14518, partial [Phytophthora parasitica])

HSP 1 Score: 75.485 bits (184), Expect = 3.562e-12
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 0 
Query:   28 LALASLASLVSLT------YQR-IRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLP 128
            LA ASL  L S +      YQ  +R RG++ +LP S Q LL+ TSLL+WL D+S +D++ P+    L L   E+  L+  +PP  Q  +T PG+L +LP  VQ  LLP
Sbjct:  140 LAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPESLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNVLLP 247
[Close]
BLAST of EWM29935.1 vs. NCBI_GenBank
Match: gi|570319930|gb|ETO67878.1| (hypothetical protein F444_15244, partial [Phytophthora parasitica P1976])

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-12
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 0 
Query:   28 LALASLASLVSLT------YQR-IRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLP 128
            LA ASL  L S +      YQ  +R RG++ +LP S Q LL+ TSLL+WL D+S +D++ P+    L L   E+  L+  +PP  Q  +T PG+L +LP  VQ  LLP
Sbjct:  140 LAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPKSLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNALLP 247
[Close]
BLAST of EWM29935.1 vs. NCBI_GenBank
Match: gi|566016213|gb|ETI39124.1| (hypothetical protein F443_15257, partial [Phytophthora parasitica P1569] >gi|568041799|gb|ETM39172.1| hypothetical protein L914_14657, partial [Phytophthora parasitica])

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-12
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 0 
Query:   28 LALASLASLVSLT------YQR-IRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLP 128
            LA ASL  L S +      YQ  +R RG++ +LP S Q LL+ TSLL+WL D+S +D++ P+    L L   E+  L+  +PP  Q  +T PG+L +LP  VQ  LLP
Sbjct:  140 LAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPKSLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNALLP 247
[Close]
BLAST of EWM29935.1 vs. NCBI_GenBank
Match: gi|570974837|gb|ETP37099.1| (hypothetical protein F442_15095, partial [Phytophthora parasitica P10297])

HSP 1 Score: 75.0998 bits (183), Expect = 4.922e-12
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 0 
Query:   28 LALASLASLVSLT------YQR-IRDRGVLTYLPASTQRLLMHTSLLDWLLDSSLADRLKPYAVMSLGLNEEERAFLINSLPPAEQRALTAPGILHVLPPPVQAFLLP 128
            LA ASL  L S +      YQ  +R RG++ +LP S Q LL+ TSLL+WL D+S +D++ P+    L L   E+  L+  +PP  Q  +T PG+L +LP  VQ  LLP
Sbjct:  140 LAYASLGLLYSWSVPVWKWYQEEMRTRGLVGFLPKSLQELLLQTSLLEWLTDTSFSDKVAPFLPFLLPLTRAEQMKLLEQMPPESQVMMTKPGLLPLLPDSVQNALLP 247
The following BLAST results are available for this feature:
BLAST of EWM29935.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112521|gb|EWM29935.1|1.145e-160100.00hypothetical protein Naga_100351g7 [Nannochloropsi... [more]
gi|553183289|ref|XP_005853869.1|3.576e-13196.68hypothetical protein NGA_0452500 [Nannochloropsis ... [more]
gi|675204243|ref|XP_008911006.1|5.286e-1343.53hypothetical protein PPTG_15974 [Phytophthora para... [more]
gi|695380446|ref|XP_009516811.1|2.223e-1244.05hypothetical protein PHYSODRAFT_476527, partial [P... [more]
gi|567953693|gb|ETK79339.1|3.148e-1242.59hypothetical protein L915_14799, partial [Phytopht... [more]
gi|970618868|gb|KUF66913.1|3.322e-1242.59hypothetical protein AM587_10016189 [Phytophthora ... [more]
gi|568011840|gb|ETL86018.1|3.562e-1242.59hypothetical protein L917_14518, partial [Phytopht... [more]
gi|570319930|gb|ETO67878.1|4.605e-1242.59hypothetical protein F444_15244, partial [Phytopht... [more]
gi|566016213|gb|ETI39124.1|4.605e-1242.59hypothetical protein F443_15257, partial [Phytopht... [more]
gi|570974837|gb|ETP37099.1|4.922e-1242.59hypothetical protein F442_15095, partial [Phytopht... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna736rna736Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications