EWM23349.1, cds7319 (CDS) Nannochloropsis gaditana

Overview
NameEWM23349.1
Unique Namecds7319
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:357211..357313 -
Alignment locationCM002471.1:357047..357086 -
Alignment locationCM002471.1:356888..356944 -
Alignment locationCM002471.1:356586..356698 -
Alignment locationCM002471.1:356245..356363 -
Alignment locationCM002471.1:355809..356078 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23349.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100057g14.3908.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:357211..357313 -
CM002471.1supercontigCM002471.1:357047..357086 -
CM002471.1supercontigCM002471.1:356888..356944 -
CM002471.1supercontigCM002471.1:356586..356698 -
CM002471.1supercontigCM002471.1:356245..356363 -
CM002471.1supercontigCM002471.1:355809..356078 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23349.1 vs. NCBI_GenBank
Match: gi|585104357|gb|EWM23349.1| (hypothetical protein Naga_100057g14 [Nannochloropsis gaditana])

HSP 1 Score: 478.789 bits (1231), Expect = 5.780e-171
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query:    1 MFFAASSDFFHSMNALVARMRAVVLLLFMMGPVQAFVPRIPKQSPTSRSEILIDDATAAAKSSTTPIIVRAIADSMLKGGMLVGAIFGGSFMAGLSSTTGIMAPVHAAVINMPRCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKVDGNYWISKEDPPSDGTVDFIPGGSKNDAPAPDFTGTN 233
            MFFAASSDFFHSMNALVARMRAVVLLLFMMGPVQAFVPRIPKQSPTSRSEILIDDATAAAKSSTTPIIVRAIADSMLKGGMLVGAIFGGSFMAGLSSTTGIMAPVHAAVINMPRCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKVDGNYWISKEDPPSDGTVDFIPGGSKNDAPAPDFTGTN
Sbjct:    1 MFFAASSDFFHSMNALVARMRAVVLLLFMMGPVQAFVPRIPKQSPTSRSEILIDDATAAAKSSTTPIIVRAIADSMLKGGMLVGAIFGGSFMAGLSSTTGIMAPVHAAVINMPRCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKVDGNYWISKEDPPSDGTVDFIPGGSKNDAPAPDFTGTN 233          
BLAST of EWM23349.1 vs. NCBI_GenBank
Match: gi|1210514369|dbj|GAX26699.1| (hypothetical protein FisN_2Hh354 [Fistulifera solaris])

HSP 1 Score: 84.7297 bits (208), Expect = 4.244e-17
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 0
Query:  108 AVINMPRCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKV 196
            AVI+   C  G+G+GC  + EGNE ++ LQE+SA N E  +++ L  Y + N+ D+F V  + LV KPDG F+A+ +   ++L++EGKV
Sbjct:   44 AVISSKYCSAGVGEGCGDLSEGNELIRSLQEKSAINRERYQQEALDAYYMKNYPDFFGVVGKTLVKKPDGTFVALADSEVEKLKQEGKV 132          
BLAST of EWM23349.1 vs. NCBI_GenBank
Match: gi|224012104|ref|XP_002294705.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969725|gb|EED88065.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 82.0333 bits (201), Expect = 1.228e-15
Identity = 38/108 (35.19%), Postives = 66/108 (61.11%), Query Frame = 0
Query:   94 GLSSTTGIMAPVHAAVINMP-RCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKVDGNY 200
             +S+ +  + P +A VI  P RC  G GDGC ++ EGN F++ LQ++S +N E ++K+ L  Y + N+ D FAV ++++V + DG F+    +  K++  +GK+   Y
Sbjct:   69 SISTASIAVTPANADVIRSPGRCANGEGDGCDSLAEGNAFIESLQKKSLENKEENQKEALYAYYMKNYPDVFAVSDKRMVKRQDGSFVLYSLEEVKEMTNQGKIAIEY 176          
BLAST of EWM23349.1 vs. NCBI_GenBank
Match: gi|1210531324|dbj|GAX10085.1| (hypothetical protein FisN_2Lh354 [Fistulifera solaris])

HSP 1 Score: 80.4925 bits (197), Expect = 2.231e-15
Identity = 36/89 (40.45%), Postives = 59/89 (66.29%), Query Frame = 0
Query:  108 AVINMPRCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKV 196
            AVI+   C  G+G+GC  + EGNE ++ LQE+SA N E  +++ L  Y + N+ D+F+V  + LV K DG F+A+ +   ++L+++GKV
Sbjct:   44 AVISSKYCSAGVGEGCGDLSEGNELIRSLQEKSAMNRERYQQEALDAYYMKNYPDFFSVVGKTLVKKTDGTFVALADSEVEKLKQDGKV 132          
BLAST of EWM23349.1 vs. NCBI_GenBank
Match: gi|298706954|emb|CBJ29773.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.0258 bits (188), Expect = 5.968e-14
Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 0
Query:   89 GSFMAGLSSTTGIMAPVHAAVINMPRCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKVDGNYWISKE 205
            G+ + G +  TG M    A V   PRC  G G  C  + EGNE +K LQ +SA + +   ++ L  YN++NFKDYF  +++ +V    GK+  + N  Y   EK GKV  + ++ ++
Sbjct:   59 GAVLVGGALITGAMDVARADVSISPRCITGEGAQCEDLAEGNELIKSLQAKSAISKDRYFQETLDTYNVHNFKDYFKAESKHMVKHNTGKYEILTNAEYAAAEKAGKVRNDVFLGED 175          
BLAST of EWM23349.1 vs. NCBI_GenBank
Match: gi|397569728|gb|EJK46927.1| (hypothetical protein THAOC_34382 [Thalassiosira oceanica])

HSP 1 Score: 67.3958 bits (163), Expect = 3.747e-10
Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 0
Query:  101 IMAPVHAAVINMPRCEGGLGDGCAAMGEGNEFVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGKFIAIDNKIYKQLEKEGKV 196
             MAP+ A   +  R   G G  C  +  GNE++K LQ RS +N E+++++ L  Y + N+ D FAV  +K+V K DG F   D     +L  EG++
Sbjct:   42 FMAPLVANFRH--RTANGEGSDCERLAGGNEYIKSLQRRSIENKEANERESLNAYYMKNYPDVFAVDGKKMVKKTDGSFALYDTNDLARLTHEGRI 135          
The following BLAST results are available for this feature:
BLAST of EWM23349.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585104357|gb|EWM23349.1|5.780e-171100.00hypothetical protein Naga_100057g14 [Nannochlorops... [more]
gi|1210514369|dbj|GAX26699.1|4.244e-1742.70hypothetical protein FisN_2Hh354 [Fistulifera sola... [more]
gi|224012104|ref|XP_002294705.1|1.228e-1535.19predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210531324|dbj|GAX10085.1|2.231e-1540.45hypothetical protein FisN_2Lh354 [Fistulifera sola... [more]
gi|298706954|emb|CBJ29773.1|5.968e-1435.04conserved unknown protein [Ectocarpus siliculosus][more]
gi|397569728|gb|EJK46927.1|3.747e-1036.46hypothetical protein THAOC_34382 [Thalassiosira oc... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7336rna7336Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications