EWM23364.1, cds7315 (CDS) Nannochloropsis gaditana

Overview
NameEWM23364.1
Unique Namecds7315
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:347257..347949 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23364.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100057g18.3923.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:347257..347949 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23364.1 vs. NCBI_GenBank
Match: gi|585104372|gb|EWM23364.1| (hypothetical protein Naga_100057g18 [Nannochloropsis gaditana])

HSP 1 Score: 472.241 bits (1214), Expect = 1.607e-168
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0
Query:    1 MSAHVPHGPPRQRNTLLLQSIAVLILARTLYAFVSPTVPSRRSVESLVAHRVVPVLLARVGGGFGFGKKKTLASEVDDLKYFEGTIYSPYPGRRPLPPFESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEEEAFITFRVKRHVWMSERSKFLRGEDGGWLFLDEQV 230
            MSAHVPHGPPRQRNTLLLQSIAVLILARTLYAFVSPTVPSRRSVESLVAHRVVPVLLARVGGGFGFGKKKTLASEVDDLKYFEGTIYSPYPGRRPLPPFESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEEEAFITFRVKRHVWMSERSKFLRGEDGGWLFLDEQV
Sbjct:    1 MSAHVPHGPPRQRNTLLLQSIAVLILARTLYAFVSPTVPSRRSVESLVAHRVVPVLLARVGGGFGFGKKKTLASEVDDLKYFEGTIYSPYPGRRPLPPFESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEEEAFITFRVKRHVWMSERSKFLRGEDGGWLFLDEQV 230          
BLAST of EWM23364.1 vs. NCBI_GenBank
Match: gi|553183091|ref|XP_005853837.1| (zn-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|553185602|ref|XP_005854274.1| zn-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294786|gb|EKU22086.1| zn-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295223|gb|EKU22522.1| zn-binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 471.855 bits (1213), Expect = 3.474e-168
Identity = 229/230 (99.57%), Postives = 229/230 (99.57%), Query Frame = 0
Query:    1 MSAHVPHGPPRQRNTLLLQSIAVLILARTLYAFVSPTVPSRRSVESLVAHRVVPVLLARVGGGFGFGKKKTLASEVDDLKYFEGTIYSPYPGRRPLPPFESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEEEAFITFRVKRHVWMSERSKFLRGEDGGWLFLDEQV 230
            MSAH PHGPPRQRNTLLLQSIAVLILARTLYAFVSPTVPSRRSVESLVAHRVVPVLLARVGGGFGFGKKKTLASEVDDLKYFEGTIYSPYPGRRPLPPFESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEEEAFITFRVKRHVWMSERSKFLRGEDGGWLFLDEQV
Sbjct:    8 MSAHAPHGPPRQRNTLLLQSIAVLILARTLYAFVSPTVPSRRSVESLVAHRVVPVLLARVGGGFGFGKKKTLASEVDDLKYFEGTIYSPYPGRRPLPPFESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEEEAFITFRVKRHVWMSERSKFLRGEDGGWLFLDEQV 237          
BLAST of EWM23364.1 vs. NCBI_GenBank
Match: gi|159465870|ref|XP_001691143.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158270335|gb|EDO96194.1| predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 98.2117 bits (243), Expect = 2.981e-22
Identity = 51/105 (48.57%), Postives = 64/105 (60.95%), Query Frame = 0
Query:  103 PCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEEEAFITFRVKRHV 207
            PC CGS  +Y  CC PLH G  RA+TPE LLRSRY+AYV   P Y+  TTHP S P       AY+  ++      +   L I  Q+AGAT +EAFITFR++R +
Sbjct:   42 PCPCGSGTAYEACCAPLHDGATRAATPEVLLRSRYTAYVAKNPEYIAETTHPDS-PEYSGSRTAYIRDVKNTMRRLDPMGLAIVSQDAGATPDEAFITFRLQRRI 145          
BLAST of EWM23364.1 vs. NCBI_GenBank
Match: gi|1039820971|ref|WP_064980086.1| (hypothetical protein [Mycobacterium mucogenicum] >gi|1038389389|gb|OBJ43759.1| hypothetical protein A5630_18175 [Mycobacterium mucogenicum])

HSP 1 Score: 96.6709 bits (239), Expect = 5.650e-22
Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = 0
Query:   98 PFESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEEEA-FITFRVK------RHVWMSERSKFLRGEDGGWLFLD 227
            P  + PC C +   Y  CC PLH+GE  A+T  AL+RSR++A+  G   YLLAT HP + P       A L+L +        ++LQI   EAG T++ A  + FR +      RH+ + ERS+F RG+DGGWL++D
Sbjct:    2 PTNNPPCRCDTGAEYAACCGPLHRGERSAATAVALMRSRFTAFALGEVGYLLATWHPDTRP-------ADLDLDDAVA----WRRLQIVDTEAGGTDDPAGVVQFRAQYVRDGSRHI-LHERSRFTRGDDGGWLYVD 126          
BLAST of EWM23364.1 vs. NCBI_GenBank
Match: gi|950080920|ref|WP_057166712.1| (hypothetical protein [Mycobacterium sp. Root265] >gi|946265601|gb|KRD17011.1| hypothetical protein ASE48_26370 [Mycobacterium sp. Root265])

HSP 1 Score: 95.1301 bits (235), Expect = 2.734e-21
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 0
Query:  100 ESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEEE-AFITFRV------KRHVWMSERSKFLRGEDGGWLFLDEQV 230
            ++ PC CGS ++Y  CC PLH G   A T EAL+RSR+SA+  G   YLL++ HP + P R       L+L +    +   ++LQI   EAG  +++   + FR       KRH+ + ERS+F RG DG W ++D ++
Sbjct:    5 DTGPCPCGSGQAYRDCCGPLHDGTVVAGTAEALMRSRFSAFARGRADYLLSSWHPGTRPAR-------LDLDD----QITWRRLQIVDTEAGGADDDTGIVEFRAEYLQDGKRHI-LHERSRFRRGRDGSWRYVDGEI 130          
BLAST of EWM23364.1 vs. NCBI_GenBank
Match: gi|1119079807|emb|SHW26150.1| (seC-C motif domain-containing protein [Mycobacterium abscessus subsp. abscessus])

HSP 1 Score: 94.3597 bits (233), Expect = 6.024e-21
Identity = 56/138 (40.58%), Postives = 77/138 (55.80%), Query Frame = 0
Query:   97 PPFESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEEEA-FITFRVK------RHVWMSERSKFLRGEDGGWLFLD 227
            PP  + PC C +   Y  CC PLH+GE  A+T  AL+RSR++A+  G   YLLAT HP S P       A L+L +        ++LQI   EAG  ++ A  + FR +      RH+ + ERS+F RG DG WL++D
Sbjct:    6 PPTNNQPCRCDTGAEYDACCGPLHRGERAAATAVALMRSRFTAFALGDVDYLLATWHPGSRP-------ADLDLDDAVV----WRRLQIVDTEAGGADDPAGVVQFRAQYVRDGSRHI-LHERSRFTRGGDGRWLYVD 131          
BLAST of EWM23364.1 vs. NCBI_GenBank
Match: gi|750490599|ref|WP_040772470.1| (hypothetical protein [Rhodococcus rhodnii])

HSP 1 Score: 94.3597 bits (233), Expect = 6.054e-21
Identity = 56/140 (40.00%), Postives = 78/140 (55.71%), Query Frame = 0
Query:   94 RPLPPFESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGAT-EEEAFITFRVKRHVW-----MSERSKFLRGEDGGWLFLD 227
            RP P  +  PC CG   SYG CC PLH+GE RA + EAL+RSRY+A+  G   +L+ + HPS+AP          E +++   EE   +L+I     G   + E  +TFR   H       ++E S+F+R EDG WL+LD
Sbjct:    6 RPAPEPDRAPCPCGRGDSYGDCCGPLHRGERRAPSAEALMRSRYTAFAIGDAGHLVRSWHPSTAP----------EHVDLD-PEEQWDRLEIVATTGGGPFDSEGTVTFRAHHHRGGRAGVLAEHSRFVR-EDGRWLYLD 133          
BLAST of EWM23364.1 vs. NCBI_GenBank
Match: gi|518947090|ref|WP_020102965.1| (hypothetical protein [Mycobacterium sp. 360MFTsu5.1])

HSP 1 Score: 92.4337 bits (228), Expect = 2.660e-20
Identity = 54/137 (39.42%), Postives = 76/137 (55.47%), Query Frame = 0
Query:   98 PFESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEE-EAFITFRVK------RHVWMSERSKFLRGEDGGWLFLD 227
            P  + PC C +   Y  CC PLH+GE  A+T  AL+RSR++A+  G   YLLAT HP + P       A L+L          ++LQI   EAG  ++    + FR +      RH+ + ERS+F RG+DGGWL++D
Sbjct:    2 PTNNPPCRCDTGAEYAACCGPLHRGERSAATAVALMRSRFTAFALGEVGYLLATWHPDTRP-------ADLDLDGAVV----WRRLQIVDTEAGGADDPTGVVQFRAQYVRDGSRHI-LHERSRFTRGDDGGWLYVD 126          
BLAST of EWM23364.1 vs. NCBI_GenBank
Match: gi|992019995|ref|WP_060999096.1| (hypothetical protein [Mycobacterium mucogenicum])

HSP 1 Score: 91.6633 bits (226), Expect = 5.727e-20
Identity = 55/137 (40.15%), Postives = 77/137 (56.20%), Query Frame = 0
Query:   98 PFESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEEEA-FITFRVK------RHVWMSERSKFLRGEDGGWLFLD 227
            P  + PC C +   Y  CC PLH+GE  A+T  AL+RSR++A+  G   YLLAT HP++ P       A L+L +        ++LQI   EAG  +E A  + FR +      RH+ + ERS+F RG DG WL++D
Sbjct:    2 PTNNQPCRCDTGTEYDACCGPLHRGERPAATAVALMRSRFTAFALGDVDYLLATWHPNTRP-------ADLDLDDAVV----WRRLQIVDTEAGGADEPAGVVQFRAQYVRDGSRHI-LHERSRFTRGGDGRWLYVD 126          
BLAST of EWM23364.1 vs. NCBI_GenBank
Match: gi|1039529425|ref|WP_064860834.1| (hypothetical protein [Mycobacterium mucogenicum] >gi|1037480811|gb|OBA77647.1| hypothetical protein A5642_05775 [Mycobacterium mucogenicum])

HSP 1 Score: 91.2781 bits (225), Expect = 6.236e-20
Identity = 54/137 (39.42%), Postives = 77/137 (56.20%), Query Frame = 0
Query:   98 PFESTPCACGSDKSYGQCCFPLHKGEDRASTPEALLRSRYSAYVHGFPRYLLATTHPSSAPMRPKRLKAYLELLEIACSEENLKQLQIGVQEAGATEEEA-FITFRVK------RHVWMSERSKFLRGEDGGWLFLD 227
            P  + PC C +   Y  CC PLH+GE  A+T  AL+RSR++A+  G   YLLAT HP++ P       A L+L +        ++LQI   EAG  ++ A  + FR +      RH+ + ERS+F RG DG WL++D
Sbjct:    2 PTNNQPCRCDTGTEYDACCGPLHRGERPAATAVALMRSRFTAFALGDVDYLLATWHPNTRP-------ADLDLDDAVV----WRRLQIVDTEAGGADDPAGVVQFRAQYVRDGSRHI-LHERSRFTRGRDGRWLYVD 126          
The following BLAST results are available for this feature:
BLAST of EWM23364.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104372|gb|EWM23364.1|1.607e-168100.00hypothetical protein Naga_100057g18 [Nannochlorops... [more]
gi|553183091|ref|XP_005853837.1|3.474e-16899.57zn-binding protein, partial [Nannochloropsis gadit... [more]
gi|159465870|ref|XP_001691143.1|2.981e-2248.57predicted protein [Chlamydomonas reinhardtii] >gi|... [more]
gi|1039820971|ref|WP_064980086.1|5.650e-2240.88hypothetical protein [Mycobacterium mucogenicum] >... [more]
gi|950080920|ref|WP_057166712.1|2.734e-2138.41hypothetical protein [Mycobacterium sp. Root265] >... [more]
gi|1119079807|emb|SHW26150.1|6.024e-2140.58seC-C motif domain-containing protein [Mycobacteri... [more]
gi|750490599|ref|WP_040772470.1|6.054e-2140.00hypothetical protein [Rhodococcus rhodnii][more]
gi|518947090|ref|WP_020102965.1|2.660e-2039.42hypothetical protein [Mycobacterium sp. 360MFTsu5.... [more]
gi|992019995|ref|WP_060999096.1|5.727e-2040.15hypothetical protein [Mycobacterium mucogenicum][more]
gi|1039529425|ref|WP_064860834.1|6.236e-2039.42hypothetical protein [Mycobacterium mucogenicum] >... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7332rna7332Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications