EWM23413.1, cds7269 (CDS) Nannochloropsis gaditana

Overview
NameEWM23413.1
Unique Namecds7269
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:239662..243150 +

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Properties
Property NameValue
Protein idEWM23413.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100077g16.5203.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:239662..243150 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23413.1 vs. NCBI_GenBank
Match: gi|585104429|gb|EWM23413.1| (hypothetical protein Naga_100077g16 [Nannochloropsis gaditana])

HSP 1 Score: 2367.04 bits (6133), Expect = 0.000e+0
Identity = 1162/1162 (100.00%), Postives = 1162/1162 (100.00%), Query Frame = 0
Query:    1 MRRLQAWPPWIVASLMVIFLQLEESRMGTSPVLWTPAAAFNPVPNFPKPFQSISKCTNYIKIMLVGGDSTDLKPLCRLSASLSTSSPVTTPTPILCSNNSHNSRDCVDRHVVKIASNLRQSLKKKSGSESVGILQKELEIALRKDCLDPSASSSVPGVKSKRPRKTNWKKARQTHASTRRLLVALVRDFARYNVDPGVTFWSTFEAWLAFPRVIPPTGEIASLVLALAILDVPPGSEGLLNAGLQAACTERTASPRTMAVADAQQFCKALTLLRGPGATFRVGPAAGMARLLASLEREVRAAKYPSRREDRTLVLPKQTSGTRWVRRPSHVSAPQAETERVPALTCSLLHRRVLDALRTVGLVCEDEVCHAGLRLDVVVYPPSIPPSAPPSLFRPRLPLVIEIDGPQHFIHGDPTRPTGATVARHRFVRSQQDQWAGLVSLTHADAQGEKGRTPVERLLAVLEAKVREQAGVELAGYRTGAGGAKGNGGEGERVEMEASGGRERRGGNAAAYEGKGKMEQGKTTYLGVEMQAWELSKRLLVSRSSQEVLSLVEEARQGHRSSFLDASHFATALTRLARISTRAPQPRLSRRSNKAGLRASNDRNADNRTHGTAGNATTTNYLSNSSSNDTIIDSDIDSFGNRESGIFGSISSKTGQKKESVNGCHRWVGGPAGLLGNTTQALAIIGQADFPALALLIEAMIPFYEGILEKRGEKGGDGCADDSICETEREMLAVAEAAIARVAELEQRSMARAEEETRKEDGGTRPLPGEAIRYSAPKSSTGDRDAPCGIDLSSARYPEVLMTSWSLVTFLHAISRLGYHSWSLPVSASRIQTMISRGQLDAPALVSVLTSLTMICLRISTPPATLPRTNSSCMLPDSPSMPISQRWELTFPFSTAATSILPSTEGVFAAVDALVQGSLGQLHLLSPRDLVSFVRAITLFEEAGYVLATSLDSRACHANALPSSDAGLPSFLPSSFSPYQDGIKAMRTGTSSLTPQPTRERLITSIVEAAGKPHISQSLSLSDLAVLTLRAPADGEHEEVVSNQRDRRKSPQWPLIKDVRRRLRSMSPSALVKFLLYELPVRSMTEGAWRQEPCTIRRQKFLRRTSLMLQPRPTRAFLMMLTNELYKQRAALTVREKASVIAQLRAWEDIYDPGTRFWQRFP 1162
            MRRLQAWPPWIVASLMVIFLQLEESRMGTSPVLWTPAAAFNPVPNFPKPFQSISKCTNYIKIMLVGGDSTDLKPLCRLSASLSTSSPVTTPTPILCSNNSHNSRDCVDRHVVKIASNLRQSLKKKSGSESVGILQKELEIALRKDCLDPSASSSVPGVKSKRPRKTNWKKARQTHASTRRLLVALVRDFARYNVDPGVTFWSTFEAWLAFPRVIPPTGEIASLVLALAILDVPPGSEGLLNAGLQAACTERTASPRTMAVADAQQFCKALTLLRGPGATFRVGPAAGMARLLASLEREVRAAKYPSRREDRTLVLPKQTSGTRWVRRPSHVSAPQAETERVPALTCSLLHRRVLDALRTVGLVCEDEVCHAGLRLDVVVYPPSIPPSAPPSLFRPRLPLVIEIDGPQHFIHGDPTRPTGATVARHRFVRSQQDQWAGLVSLTHADAQGEKGRTPVERLLAVLEAKVREQAGVELAGYRTGAGGAKGNGGEGERVEMEASGGRERRGGNAAAYEGKGKMEQGKTTYLGVEMQAWELSKRLLVSRSSQEVLSLVEEARQGHRSSFLDASHFATALTRLARISTRAPQPRLSRRSNKAGLRASNDRNADNRTHGTAGNATTTNYLSNSSSNDTIIDSDIDSFGNRESGIFGSISSKTGQKKESVNGCHRWVGGPAGLLGNTTQALAIIGQADFPALALLIEAMIPFYEGILEKRGEKGGDGCADDSICETEREMLAVAEAAIARVAELEQRSMARAEEETRKEDGGTRPLPGEAIRYSAPKSSTGDRDAPCGIDLSSARYPEVLMTSWSLVTFLHAISRLGYHSWSLPVSASRIQTMISRGQLDAPALVSVLTSLTMICLRISTPPATLPRTNSSCMLPDSPSMPISQRWELTFPFSTAATSILPSTEGVFAAVDALVQGSLGQLHLLSPRDLVSFVRAITLFEEAGYVLATSLDSRACHANALPSSDAGLPSFLPSSFSPYQDGIKAMRTGTSSLTPQPTRERLITSIVEAAGKPHISQSLSLSDLAVLTLRAPADGEHEEVVSNQRDRRKSPQWPLIKDVRRRLRSMSPSALVKFLLYELPVRSMTEGAWRQEPCTIRRQKFLRRTSLMLQPRPTRAFLMMLTNELYKQRAALTVREKASVIAQLRAWEDIYDPGTRFWQRFP
Sbjct:    1 MRRLQAWPPWIVASLMVIFLQLEESRMGTSPVLWTPAAAFNPVPNFPKPFQSISKCTNYIKIMLVGGDSTDLKPLCRLSASLSTSSPVTTPTPILCSNNSHNSRDCVDRHVVKIASNLRQSLKKKSGSESVGILQKELEIALRKDCLDPSASSSVPGVKSKRPRKTNWKKARQTHASTRRLLVALVRDFARYNVDPGVTFWSTFEAWLAFPRVIPPTGEIASLVLALAILDVPPGSEGLLNAGLQAACTERTASPRTMAVADAQQFCKALTLLRGPGATFRVGPAAGMARLLASLEREVRAAKYPSRREDRTLVLPKQTSGTRWVRRPSHVSAPQAETERVPALTCSLLHRRVLDALRTVGLVCEDEVCHAGLRLDVVVYPPSIPPSAPPSLFRPRLPLVIEIDGPQHFIHGDPTRPTGATVARHRFVRSQQDQWAGLVSLTHADAQGEKGRTPVERLLAVLEAKVREQAGVELAGYRTGAGGAKGNGGEGERVEMEASGGRERRGGNAAAYEGKGKMEQGKTTYLGVEMQAWELSKRLLVSRSSQEVLSLVEEARQGHRSSFLDASHFATALTRLARISTRAPQPRLSRRSNKAGLRASNDRNADNRTHGTAGNATTTNYLSNSSSNDTIIDSDIDSFGNRESGIFGSISSKTGQKKESVNGCHRWVGGPAGLLGNTTQALAIIGQADFPALALLIEAMIPFYEGILEKRGEKGGDGCADDSICETEREMLAVAEAAIARVAELEQRSMARAEEETRKEDGGTRPLPGEAIRYSAPKSSTGDRDAPCGIDLSSARYPEVLMTSWSLVTFLHAISRLGYHSWSLPVSASRIQTMISRGQLDAPALVSVLTSLTMICLRISTPPATLPRTNSSCMLPDSPSMPISQRWELTFPFSTAATSILPSTEGVFAAVDALVQGSLGQLHLLSPRDLVSFVRAITLFEEAGYVLATSLDSRACHANALPSSDAGLPSFLPSSFSPYQDGIKAMRTGTSSLTPQPTRERLITSIVEAAGKPHISQSLSLSDLAVLTLRAPADGEHEEVVSNQRDRRKSPQWPLIKDVRRRLRSMSPSALVKFLLYELPVRSMTEGAWRQEPCTIRRQKFLRRTSLMLQPRPTRAFLMMLTNELYKQRAALTVREKASVIAQLRAWEDIYDPGTRFWQRFP 1162          
BLAST of EWM23413.1 vs. NCBI_GenBank
Match: gi|585112903|gb|EWM30244.1| (RAP domain protein [Nannochloropsis gaditana])

HSP 1 Score: 71.633 bits (174), Expect = 8.299e-9
Identity = 44/129 (34.11%), Postives = 66/129 (51.16%), Query Frame = 0
Query:  347 SLLHRRVLDAL-RTVGLVCEDEVCHAGLRLDVVVYPPSIPPSAPPSLFRPRLPLVIEIDGPQHFIHGDPTRPTGATVARHRFVRSQQDQWAGLVSLTHADAQGEKGRTPVERLLAVLEAKVREQAGVEL 474
            S  HR VL  + +++GL C+ EV      LD+V+YP               LP+V+E DGP HF    P    G TV +HR ++ + D+W  +VS++ A+ Q  K         A+L  K+R  AG++L
Sbjct:  867 SYFHRDVLAVVTKSLGLRCDIEVEDEAYTLDMVIYPTD-----------GGLPVVVEADGPHHFFRNQPDEAMGFTVFKHRLLQGRSDRWRAVVSVSQAEWQRAKESDSQRGRTALLIEKLR-GAGLDL 983          
The following BLAST results are available for this feature:
BLAST of EWM23413.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104429|gb|EWM23413.1|0.000e+0100.00hypothetical protein Naga_100077g16 [Nannochlorops... [more]
gi|585112903|gb|EWM30244.1|8.299e-934.11RAP domain protein [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7286rna7286Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications