EWM23402.1, cds7262 (CDS) Nannochloropsis gaditana

Overview
NameEWM23402.1
Unique Namecds7262
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:207886..208623 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23402.1
Productdynein heavy chain
Orig transcript idgnl|cribi|Naga_100077g8.5192.mrna
GeneDYHC11
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:207886..208623 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003774motor activity
GO:0000166nucleotide binding
GO:0003777microtubule motor activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0007018microtubule-based movement
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO:0030286dynein complex
Vocabulary: INTERPRO
TermDefinition
IPR026983DHC_fam
IPR004273Dynein_heavy_dom
Homology
BLAST of EWM23402.1 vs. NCBI_GenBank
Match: gi|585104418|gb|EWM23402.1| (dynein heavy chain [Nannochloropsis gaditana])

HSP 1 Score: 510.375 bits (1313), Expect = 0.000e+0
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0
Query:    1 MQRIISKVKITLQQLQLAIKGEVVMSEELASTLLAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQGLLTAMKQEVTRRHKADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVYGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVRKDIFGTQGPYEAPCYKYPCRTDRFMVMMVTLKGGDRPPTHWALRGTALLCNIEG 245
            MQRIISKVKITLQQLQLAIKGEVVMSEELASTLLAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQGLLTAMKQEVTRRHKADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVYGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVRKDIFGTQGPYEAPCYKYPCRTDRFMVMMVTLKGGDRPPTHWALRGTALLCNIEG
Sbjct:    1 MQRIISKVKITLQQLQLAIKGEVVMSEELASTLLAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQGLLTAMKQEVTRRHKADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVYGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVRKDIFGTQGPYEAPCYKYPCRTDRFMVMMVTLKGGDRPPTHWALRGTALLCNIEG 245          
BLAST of EWM23402.1 vs. NCBI_GenBank
Match: gi|298708134|emb|CBJ30475.1| (dynein heavy chain [Ectocarpus siliculosus])

HSP 1 Score: 374.015 bits (959), Expect = 1.124e-115
Identity = 171/245 (69.80%), Postives = 205/245 (83.67%), Query Frame = 0
Query:    1 MQRIISKVKITLQQLQLAIKGEVVMSEELASTLLAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQGLLTAMKQEVTRRHKADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVYGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVRKDIFGTQGPYEAPCYKYPCRTDRFMVMMVTLKGG-DRPPTHWALRGTALLCNIE 244
            +Q++I+KV+  L QLQ AIKGEVVM+EEL  TL AVYDAKVP  W FT+ GDEFSWILPTLGLWFSSL+ RDEQ RTWLN+GRP  YWL GF NPQG+LTAMKQEVTR+HKA+KWALDDVVYHTEVTSYER EQ+RSPP+EG+Y++GL L+GA W+K EG +VESE KKLFV LPVL V+ANTKS++ KV++++FG QGP+E PCYKY  RTDR+++ MV LK   ++ P  W LRGTALLCN +
Sbjct: 4397 LQKVIAKVRSILTQLQQAIKGEVVMTEELQETLYAVYDAKVPRLWAFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNNGRPTCYWLTGFFNPQGMLTAMKQEVTRKHKAEKWALDDVVYHTEVTSYERMEQVRSPPAEGVYIHGLFLDGAAWSKQEGVMVESEPKKLFVSLPVLFVSANTKSDQVKVKREMFGAQGPFECPCYKYSARTDRYIIFMVNLKCTMEKNPQFWTLRGTALLCNTD 4641          
BLAST of EWM23402.1 vs. NCBI_GenBank
Match: gi|1173947926|gb|OQR96095.1| (dynein heavy chain [Achlya hypogyna])

HSP 1 Score: 365.155 bits (936), Expect = 1.411e-112
Identity = 169/246 (68.70%), Postives = 202/246 (82.11%), Query Frame = 0
Query:    1 MQRIISKVKITLQQLQLAIKGEVVMSEELASTLLAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQGLLTAMKQEVTRRH-KADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVYGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVRKDIFGTQGPYEAPCYKYPCRTDRFMVMMVTLKG-GDRPPTHWALRGTALLCNIE 244
            +QR+ISKV+  L QLQ+AI+GEVVM+EEL+ TL A++DAKVP SW+ T  GDEFSWILPTLGLWFSSLL RDEQ RTWLN  RPN +WL GF NPQG+LTAMKQEVTR+H K DKWALDDVVYHTEVT++ER EQ+R PP+EGI +YGL L+GA W+K +GTLVESE KKLF  LPVLHV + +K  E K RK+++G+ GP+E PCYKYP RTDR+++ MVT+K   +RPP HW LRG ALLCN E
Sbjct: 4337 LQRVISKVRTMLSQLQMAIRGEVVMTEELSWTLNAIFDAKVPPSWLRTSVGDEFSWILPTLGLWFSSLLSRDEQSRTWLNTRRPNCFWLTGFFNPQGMLTAMKQEVTRKHSKTDKWALDDVVYHTEVTTFERAEQVRQPPAEGILIYGLFLDGATWSKADGTLVESEPKKLFTSLPVLHVNSMSKELEMKSRKELYGSIGPFECPCYKYPMRTDRYIIFMVTMKCPSNRPPRHWGLRGVALLCNTE 4582          
BLAST of EWM23402.1 vs. NCBI_GenBank
Match: gi|673032676|ref|XP_008870299.1| (hypothetical protein H310_06866 [Aphanomyces invadans] >gi|574474299|gb|ETW01301.1| hypothetical protein H310_06866 [Aphanomyces invadans])

HSP 1 Score: 364.77 bits (935), Expect = 2.245e-112
Identity = 168/246 (68.29%), Postives = 203/246 (82.52%), Query Frame = 0
Query:    1 MQRIISKVKITLQQLQLAIKGEVVMSEELASTLLAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQGLLTAMKQEVTRRH-KADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVYGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVRKDIFGTQGPYEAPCYKYPCRTDRFMVMMVTLKG-GDRPPTHWALRGTALLCNIE 244
            +QR+ISKV+  L QLQ+AI+GEVVM+EEL+ TL A++DAKVP SW+ T  GDEFSWILPTLGLWFSSLL RDEQ RTWLN  RPN +WL GF NPQG+LTAMKQEVTR+H K DKWALDDVVYHTEVT++ER EQ+R+PP+EG+ +YGL L+GA W+K +GTLVESE KKLF  LPVLHV + +K  E K RK+++G+ GP+E PCYKYP RTDR+++ MVT+K   +RPP HW LRG ALLCN E
Sbjct: 4338 LQRVISKVRTMLSQLQMAIRGEVVMTEELSWTLNAIFDAKVPPSWLRTSVGDEFSWILPTLGLWFSSLLSRDEQSRTWLNTRRPNCFWLTGFFNPQGMLTAMKQEVTRKHSKTDKWALDDVVYHTEVTTFERAEQVRTPPAEGVLIYGLFLDGATWSKADGTLVESEPKKLFTSLPVLHVNSMSKELELKSRKELYGSIGPFECPCYKYPMRTDRYIIFMVTMKCPQNRPPRHWGLRGVALLCNTE 4583          
BLAST of EWM23402.1 vs. NCBI_GenBank
Match: gi|1173961404|gb|OQS07437.1| (dynein heavy chain [Thraustotheca clavata])

HSP 1 Score: 363.999 bits (933), Expect = 3.435e-112
Identity = 169/246 (68.70%), Postives = 201/246 (81.71%), Query Frame = 0
Query:    1 MQRIISKVKITLQQLQLAIKGEVVMSEELASTLLAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQGLLTAMKQEVTRRH-KADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVYGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVRKDIFGTQGPYEAPCYKYPCRTDRFMVMMVTLKG-GDRPPTHWALRGTALLCNIE 244
            +QR+ISKV+  L QLQ+AI+GEVVM+EEL+ TL A++DAKVP SW+ T  GDEFSWILPTLGLWFSSLL RDEQ RTWLN  RPN +WL GF NPQG+LTAMKQEVTR+H K DKWALDDVVYHTEVT++ER EQ+R PP EGI +YGL L+GA W+K +GTLVESE KKLF  LPVLHV + +K  E K RK+++G+ GP+E PCYKYP RTDR+++ MVT+K   +RPP HW LRG ALLCN E
Sbjct: 4337 LQRVISKVRTMLSQLQMAIRGEVVMTEELSGTLDAIFDAKVPPSWLRTSVGDEFSWILPTLGLWFSSLLSRDEQSRTWLNTRRPNCFWLTGFFNPQGMLTAMKQEVTRKHSKTDKWALDDVVYHTEVTTFERAEQVRQPPGEGILIYGLFLDGATWSKQDGTLVESEPKKLFTSLPVLHVNSMSKELEAKSRKELYGSIGPFECPCYKYPMRTDRYIIFMVTMKCPSNRPPRHWGLRGVALLCNTE 4582          
BLAST of EWM23402.1 vs. NCBI_GenBank
Match: gi|698780141|ref|XP_009823114.1| (hypothetical protein H257_01548 [Aphanomyces astaci] >gi|574122775|gb|ETV88251.1| hypothetical protein H257_01548 [Aphanomyces astaci])

HSP 1 Score: 363.999 bits (933), Expect = 3.858e-112
Identity = 168/246 (68.29%), Postives = 202/246 (82.11%), Query Frame = 0
Query:    1 MQRIISKVKITLQQLQLAIKGEVVMSEELASTLLAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQGLLTAMKQEVTRRH-KADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVYGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVRKDIFGTQGPYEAPCYKYPCRTDRFMVMMVTLKG-GDRPPTHWALRGTALLCNIE 244
            +QR+ISKV+  L QLQ+AI+GEVVM+EEL+ TL A++DAKVP SW+ T  GDEFSWILPTLGLWFSSLL RDEQ R WLN  RPN +WL GF NPQG+LTAMKQEVTR+H K DKWALDDVVYHTEVT++ER EQ+R+PP+EGI +YGL L+GA W+K +GTLVESE KKLF  LPVLHV + +K  E K RK+++G+ GP+E PCYKYP RTDR+++ MVT+K   +RPP HW LRG ALLCN E
Sbjct: 4338 LQRVISKVRTMLSQLQMAIRGEVVMTEELSWTLNAIFDAKVPPSWLRTSVGDEFSWILPTLGLWFSSLLSRDEQSRNWLNTRRPNCFWLTGFFNPQGMLTAMKQEVTRKHSKTDKWALDDVVYHTEVTTFERAEQVRTPPAEGILIYGLFLDGATWSKADGTLVESEPKKLFTSLPVLHVNSMSKDLELKSRKELYGSIGPFECPCYKYPMRTDRYIIFMVTMKCPQNRPPRHWGLRGVALLCNTE 4583          
BLAST of EWM23402.1 vs. NCBI_GenBank
Match: gi|669155648|ref|XP_008613386.1| (hypothetical protein SDRG_09245 [Saprolegnia diclina VS20] >gi|530735021|gb|EQC33263.1| hypothetical protein SDRG_09245 [Saprolegnia diclina VS20])

HSP 1 Score: 361.303 bits (926), Expect = 3.601e-111
Identity = 168/246 (68.29%), Postives = 201/246 (81.71%), Query Frame = 0
Query:    1 MQRIISKVKITLQQLQLAIKGEVVMSEELASTLLAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQGLLTAMKQEVTRRH-KADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVYGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVRKDIFGTQGPYEAPCYKYPCRTDRFMVMMVTLKG-GDRPPTHWALRGTALLCNIE 244
            +QR+ISKV+  L QLQ+AI+GEVVM+EEL+ TL A++DAKVP SW+ T  GDEFSWILPTLGLWFSSLL RDEQ R WLN  RPN +WL GF NPQG+LTAMKQEVTR+H K DKWALDDVVYHTEVT++ER EQ+R PP+EGI +YGL L+GA W+K +GTLVESE KKLF  LPVLHV + +K  E K RK+++G+ GP+E PCYKYP RTDR+++ MVT+K   +RPP HW LRG ALLCN E
Sbjct: 4337 LQRVISKVRTMLSQLQMAIRGEVVMTEELSWTLNAIFDAKVPPSWLRTSVGDEFSWILPTLGLWFSSLLSRDEQSRNWLNTRRPNCFWLTGFFNPQGMLTAMKQEVTRKHSKTDKWALDDVVYHTEVTTFERAEQVRQPPAEGILIYGLFLDGATWSKQDGTLVESEPKKLFTSLPVLHVNSMSKELENKSRKELYGSIGPFECPCYKYPMRTDRYIIFMVTMKCPSNRPPRHWGLRGVALLCNTE 4582          
BLAST of EWM23402.1 vs. NCBI_GenBank
Match: gi|953502336|emb|CEG36522.1| (dynein heavy chain [Plasmopara halstedii])

HSP 1 Score: 360.533 bits (924), Expect = 6.817e-111
Identity = 167/246 (67.89%), Postives = 200/246 (81.30%), Query Frame = 0
Query:    1 MQRIISKVKITLQQLQLAIKGEVVMSEELASTLLAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQGLLTAMKQEVTRRH-KADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVYGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVRKDIFGTQGPYEAPCYKYPCRTDRFMVMMVTLKG-GDRPPTHWALRGTALLCNIE 244
            +QR+I+KV+  LQ LQ+AI+GEVVM+EEL+ TL A++DAKVP SW+ T  GDEFSWILPTLGLWFSSL+ RDEQ RTWLN  RPNS+WL GF NPQG+LTAMKQEVTR+H K DKWALDDVVYHTEVTS+ER EQ+R+PPSEG+Y+YGL ++GA W+K + T+VESE KKLF PLPVLHV + +K  E K RK+++G  GP+E PCYKY  RTDR+ V MVT+K    RPP HW LRG  LLCN E
Sbjct: 4350 LQRVIAKVRSMLQSLQMAIRGEVVMTEELSWTLDAIFDAKVPPSWLRTSVGDEFSWILPTLGLWFSSLISRDEQNRTWLNTRRPNSFWLTGFFNPQGMLTAMKQEVTRKHSKTDKWALDDVVYHTEVTSFERAEQVRTPPSEGVYIYGLFMDGATWSKADSTIVESEPKKLFTPLPVLHVNSMSKELETKSRKELYGAAGPFECPCYKYATRTDRYFVFMVTMKCPPGRPPRHWGLRGVCLLCNTE 4595          
BLAST of EWM23402.1 vs. NCBI_GenBank
Match: gi|570998897|gb|ETP55016.1| (hypothetical protein F442_00408 [Phytophthora parasitica P10297])

HSP 1 Score: 360.147 bits (923), Expect = 8.683e-111
Identity = 168/246 (68.29%), Postives = 200/246 (81.30%), Query Frame = 0
Query:    1 MQRIISKVKITLQQLQLAIKGEVVMSEELASTLLAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQGLLTAMKQEVTRRH-KADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVYGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVRKDIFGTQGPYEAPCYKYPCRTDRFMVMMVTLKG-GDRPPTHWALRGTALLCNIE 244
            +QR+ISKV+  LQ LQ+AI+GEVVM+EEL+ TL A++DAKVP SW+ T  GDEFSWILPTLGLWFSSL+ RDEQ RTWLN  RPNS+WL GF NPQG+LTAMKQEVTR+H K DKWALDDVVYHTEVTS+ER EQ+R+PPSEG+Y+YGL ++GA W+K +GT+VESE KKLF  LPVLHV + +K  E K RK+++G  GP+E PCYKY  RTDR+ V MVT+K    RPP HW LRG  LLCN E
Sbjct: 4377 LQRVISKVRSMLQSLQMAIRGEVVMTEELSWTLDAIFDAKVPPSWLRTSVGDEFSWILPTLGLWFSSLISRDEQNRTWLNTRRPNSFWLTGFFNPQGMLTAMKQEVTRKHSKTDKWALDDVVYHTEVTSFERAEQVRAPPSEGVYIYGLFMDGATWSKADGTIVESEPKKLFTSLPVLHVNSMSKELEAKSRKELYGAVGPFECPCYKYATRTDRYFVFMVTMKCPPGRPPRHWGLRGVCLLCNTE 4622          
BLAST of EWM23402.1 vs. NCBI_GenBank
Match: gi|695392648|ref|XP_009520395.1| (hypothetical protein PHYSODRAFT_486395 [Phytophthora sojae] >gi|348685292|gb|EGZ25107.1| hypothetical protein PHYSODRAFT_486395 [Phytophthora sojae])

HSP 1 Score: 359.377 bits (921), Expect = 1.675e-110
Identity = 167/246 (67.89%), Postives = 200/246 (81.30%), Query Frame = 0
Query:    1 MQRIISKVKITLQQLQLAIKGEVVMSEELASTLLAVYDAKVPHSWVFTVAGDEFSWILPTLGLWFSSLLQRDEQLRTWLNHGRPNSYWLPGFSNPQGLLTAMKQEVTRRH-KADKWALDDVVYHTEVTSYERPEQIRSPPSEGIYVYGLSLEGAGWNKIEGTLVESEAKKLFVPLPVLHVTANTKSEEFKVRKDIFGTQGPYEAPCYKYPCRTDRFMVMMVTLKG-GDRPPTHWALRGTALLCNIE 244
            +QR+I+KV+  LQ LQ+AI+GEVVM+EEL+ TL A++DAKVP SW+ T  GDEFSWILPTLGLWFSSL+ RDEQ RTWLN  RPNS+WL GF NPQG+LTAMKQEVTR+H K DKWALDDVVYHTEVTS+ER EQ+R+PPSEG+Y+YGL ++GA W+K +GT+VESE KKLF  LPVLHV + +K  E K RK+++G  GP+E PCYKY  RTDR+ V MVT+K    RPP HW LRG  LLCN E
Sbjct: 4332 LQRVIAKVRSMLQSLQMAIRGEVVMTEELSWTLDAIFDAKVPPSWLRTSVGDEFSWILPTLGLWFSSLISRDEQNRTWLNTRRPNSFWLTGFFNPQGMLTAMKQEVTRKHSKTDKWALDDVVYHTEVTSFERAEQVRAPPSEGVYIYGLFMDGATWSKADGTIVESEPKKLFTSLPVLHVNSMSKDLEAKSRKELYGAVGPFECPCYKYATRTDRYFVFMVTMKCPPGRPPRHWGLRGVCLLCNTE 4577          
The following BLAST results are available for this feature:
BLAST of EWM23402.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104418|gb|EWM23402.1|0.000e+0100.00dynein heavy chain [Nannochloropsis gaditana][more]
gi|298708134|emb|CBJ30475.1|1.124e-11569.80dynein heavy chain [Ectocarpus siliculosus][more]
gi|1173947926|gb|OQR96095.1|1.411e-11268.70dynein heavy chain [Achlya hypogyna][more]
gi|673032676|ref|XP_008870299.1|2.245e-11268.29hypothetical protein H310_06866 [Aphanomyces invad... [more]
gi|1173961404|gb|OQS07437.1|3.435e-11268.70dynein heavy chain [Thraustotheca clavata][more]
gi|698780141|ref|XP_009823114.1|3.858e-11268.29hypothetical protein H257_01548 [Aphanomyces astac... [more]
gi|669155648|ref|XP_008613386.1|3.601e-11168.29hypothetical protein SDRG_09245 [Saprolegnia dicli... [more]
gi|953502336|emb|CEG36522.1|6.817e-11167.89dynein heavy chain [Plasmopara halstedii][more]
gi|570998897|gb|ETP55016.1|8.683e-11168.29hypothetical protein F442_00408 [Phytophthora para... [more]
gi|695392648|ref|XP_009520395.1|1.675e-11067.89hypothetical protein PHYSODRAFT_486395 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7279rna7279Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications