EWM23434.1, cds7238 (CDS) Nannochloropsis gaditana

Overview
NameEWM23434.1
Unique Namecds7238
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:131651..131989 -
Alignment locationCM002471.1:131346..131466 -
Alignment locationCM002471.1:131019..131212 -
Alignment locationCM002471.1:130606..130888 -

Link to JBrowse

Properties
Property NameValue
Start range130606
Start range.
Protein idEWM23434.1
Productkelch repeat containing protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100275g3.7939.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:131651..131989 -
CM002471.1supercontigCM002471.1:131346..131466 -
CM002471.1supercontigCM002471.1:131019..131212 -
CM002471.1supercontigCM002471.1:130606..130888 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR015915Kelch-typ_b-propeller
IPR006652Kelch_1
Homology
BLAST of EWM23434.1 vs. NCBI_GenBank
Match: gi|585104461|gb|EWM23434.1| (kelch repeat containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 649.047 bits (1673), Expect = 0.000e+0
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0
Query:    1 MGNSTSIDPPGDDTRITDFRPQPPALNSGSAPTVRTTENVQTPGQEDLSLANIVPVSLQSNGITHTPAPSRPQAPPRSMLARRPSRERTGGTVGKKGDGNRSDWVWENSHWTKLKANKDKDREVPKCRSGHACVQIGHYMYIIGGYSDGICFSDVYILDLNSHLWRHVENSGTVVQGRASHCCCIGPGNRDIYMFGGSGPCWGRTNLGDLCKFDTEKEEWSIMPLRGQMPPPGYGQSLCVYKHRLILFGGTCGSFFYNHLFEYDTKEQVGRRDGVEGRKGGREGGGRKHALLTQASAVVFFQKLTRVSPIPS 312
            MGNSTSIDPPGDDTRITDFRPQPPALNSGSAPTVRTTENVQTPGQEDLSLANIVPVSLQSNGITHTPAPSRPQAPPRSMLARRPSRERTGGTVGKKGDGNRSDWVWENSHWTKLKANKDKDREVPKCRSGHACVQIGHYMYIIGGYSDGICFSDVYILDLNSHLWRHVENSGTVVQGRASHCCCIGPGNRDIYMFGGSGPCWGRTNLGDLCKFDTEKEEWSIMPLRGQMPPPGYGQSLCVYKHRLILFGGTCGSFFYNHLFEYDTKEQVGRRDGVEGRKGGREGGGRKHALLTQASAVVFFQKLTRVSPIPS
Sbjct:    1 MGNSTSIDPPGDDTRITDFRPQPPALNSGSAPTVRTTENVQTPGQEDLSLANIVPVSLQSNGITHTPAPSRPQAPPRSMLARRPSRERTGGTVGKKGDGNRSDWVWENSHWTKLKANKDKDREVPKCRSGHACVQIGHYMYIIGGYSDGICFSDVYILDLNSHLWRHVENSGTVVQGRASHCCCIGPGNRDIYMFGGSGPCWGRTNLGDLCKFDTEKEEWSIMPLRGQMPPPGYGQSLCVYKHRLILFGGTCGSFFYNHLFEYDTKEQVGRRDGVEGRKGGREGGGRKHALLTQASAVVFFQKLTRVSPIPS 312          
BLAST of EWM23434.1 vs. NCBI_GenBank
Match: gi|695382277|ref|XP_009517349.1| (hypothetical protein PHYSODRAFT_323522 [Phytophthora sojae] >gi|348690260|gb|EGZ30074.1| hypothetical protein PHYSODRAFT_323522 [Phytophthora sojae])

HSP 1 Score: 158.688 bits (400), Expect = 1.155e-41
Identity = 73/172 (42.44%), Postives = 104/172 (60.47%), Query Frame = 0
Query:  109 SHWTKLKANKDKDREVPKCRSGHACVQIGHYMYIIGGYSDGICFSDVYILDLNSHLWRHVENS-GTVVQGRASHCCCIGPGNRDIYMFGGSGPCWGRTNLGDLCKFDTEKEEWSIMPLRGQMPPPGYGQSLCVYKHRLILFGGTCGSFFYNHLFEYDTKEQVGRRDGVEGRK 279
            S+WTK+  +  +    P  RSGH+ + +G  MY+ GGY+DG C +D+Y  DL  H W H+E S G    GRASH  C       +Y+FGGSGP WG+TN+G L +F    + W+I+   G  PPPGYGQSLC   ++L LFGGT G  + N L+ +D   ++ R++   G++
Sbjct:   41 SNWTKISTSGHR----PPVRSGHSSLVVGDMMYVFGGYNDGNCHNDIYAFDLIRHHWMHIETSNGISPDGRASHAWCTSTDKTKLYLFGGSGPHWGQTNMGKLLQFSIRDKNWTIVEAEGTQPPPGYGQSLCAINNKLYLFGGTSGHVYVNDLYVFDEVTKIWRKEETGGKR 208          
BLAST of EWM23434.1 vs. NCBI_GenBank
Match: gi|675210655|ref|XP_008914212.1| (hypothetical protein PPTG_17991 [Phytophthora parasitica INRA-310] >gi|568085637|gb|ETN00541.1| hypothetical protein PPTG_17991 [Phytophthora parasitica INRA-310])

HSP 1 Score: 158.303 bits (399), Expect = 1.243e-41
Identity = 73/172 (42.44%), Postives = 106/172 (61.63%), Query Frame = 0
Query:  109 SHWTKLKANKDKDREVPKCRSGHACVQIGHYMYIIGGYSDGICFSDVYILDLNSHLWRHVENS-GTVVQGRASHCCCIGPGNRDIYMFGGSGPCWGRTNLGDLCKFDTEKEEWSIMPLRGQMPPPGYGQSLCVYKHRLILFGGTCGSFFYNHLFEYDTKEQVGRRDGVEGRK 279
            S+WTK+  +  +    P  RSGH+ + +G  MY+ GGY+DG C +D+Y  DL  H W H+E S G    GRASH  C       +Y+FGGSGP WG+TN+G L +F+   + W+I+  +G  PPPGYGQSLC   ++L LFGGT G  + N L+ +D   +V +++   G++
Sbjct:   41 SNWTKISTSGHR----PPVRSGHSSLVVGDMMYVFGGYNDGNCHNDIYAFDLVRHHWIHIETSNGISPDGRASHAWCTSTDKTKLYLFGGSGPHWGQTNMGKLLQFNIRDKNWTIVEAQGTQPPPGYGQSLCAINNKLYLFGGTSGHVYVNDLYVFDEVTKVWKKEETGGKR 208          
BLAST of EWM23434.1 vs. NCBI_GenBank
Match: gi|566010261|gb|ETI33172.1| (hypothetical protein F443_20126 [Phytophthora parasitica P1569] >gi|568005885|gb|ETL80163.1| hypothetical protein L917_19320 [Phytophthora parasitica] >gi|568035783|gb|ETM33411.1| hypothetical protein L914_19355 [Phytophthora parasitica] >gi|570313960|gb|ETO61908.1| hypothetical protein F444_20140 [Phytophthora parasitica P1976])

HSP 1 Score: 158.303 bits (399), Expect = 1.269e-41
Identity = 73/172 (42.44%), Postives = 106/172 (61.63%), Query Frame = 0
Query:  109 SHWTKLKANKDKDREVPKCRSGHACVQIGHYMYIIGGYSDGICFSDVYILDLNSHLWRHVENS-GTVVQGRASHCCCIGPGNRDIYMFGGSGPCWGRTNLGDLCKFDTEKEEWSIMPLRGQMPPPGYGQSLCVYKHRLILFGGTCGSFFYNHLFEYDTKEQVGRRDGVEGRK 279
            S+WTK+  +  +    P  RSGH+ + +G  MY+ GGY+DG C +D+Y  DL  H W H+E S G    GRASH  C       +Y+FGGSGP WG+TN+G L +F+   + W+I+  +G  PPPGYGQSLC   ++L LFGGT G  + N L+ +D   +V +++   G++
Sbjct:   41 SNWTKISTSGHR----PPVRSGHSSLVVGDMMYVFGGYNDGNCHNDIYAFDLVRHHWIHIETSNGISPDGRASHAWCTSTDKTKLYLFGGSGPHWGQTNMGKLLQFNIRDKNWTIVEAQGTQPPPGYGQSLCAINNKLYLFGGTSGHVYVNDLYVFDEVTKVWKKEETGGKR 208          
BLAST of EWM23434.1 vs. NCBI_GenBank
Match: gi|567976392|gb|ETL26916.1| (hypothetical protein L916_19480 [Phytophthora parasitica])

HSP 1 Score: 158.303 bits (399), Expect = 1.310e-41
Identity = 73/172 (42.44%), Postives = 106/172 (61.63%), Query Frame = 0
Query:  109 SHWTKLKANKDKDREVPKCRSGHACVQIGHYMYIIGGYSDGICFSDVYILDLNSHLWRHVENS-GTVVQGRASHCCCIGPGNRDIYMFGGSGPCWGRTNLGDLCKFDTEKEEWSIMPLRGQMPPPGYGQSLCVYKHRLILFGGTCGSFFYNHLFEYDTKEQVGRRDGVEGRK 279
            S+WTK+  +  +    P  RSGH+ + +G  MY+ GGY+DG C +D+Y  DL  H W H+E S G    GRASH  C       +Y+FGGSGP WG+TN+G L +F+   + W+I+  +G  PPPGYGQSLC   ++L LFGGT G  + N L+ +D   +V +++   G++
Sbjct:   41 SNWTKISTSGHR----PPVRSGHSSLVVGDMMYVFGGYNDGNCHNDIYAFDLVRHHWIHIETSNGISPDGRASHAWCTSTDKTKLYLFGGSGPHWGQTNMGKLLQFNIRDKNWTIVEAQGTQPPPGYGQSLCAINNKLYLFGGTSGHVYVNDLYVFDEGTKVWKKEETGGKR 208          
BLAST of EWM23434.1 vs. NCBI_GenBank
Match: gi|970662353|gb|KUF99748.1| (Kelch domain-containing protein 10 [Phytophthora nicotianae])

HSP 1 Score: 158.303 bits (399), Expect = 1.501e-41
Identity = 73/172 (42.44%), Postives = 106/172 (61.63%), Query Frame = 0
Query:  109 SHWTKLKANKDKDREVPKCRSGHACVQIGHYMYIIGGYSDGICFSDVYILDLNSHLWRHVENS-GTVVQGRASHCCCIGPGNRDIYMFGGSGPCWGRTNLGDLCKFDTEKEEWSIMPLRGQMPPPGYGQSLCVYKHRLILFGGTCGSFFYNHLFEYDTKEQVGRRDGVEGRK 279
            S+WTK+  +  +    P  RSGH+ + +G  MY+ GGY+DG C +D+Y  DL  H W H+E S G    GRASH  C       +Y+FGGSGP WG+TN+G L +F+   + W+I+  +G  PPPGYGQSLC   ++L LFGGT G  + N L+ +D   +V +++   G++
Sbjct:   41 SNWTKISTSGHR----PPVRSGHSSLVVGDMMYVFGGYNDGNCHNDIYXFDLVRHHWIHIETSNGISPDGRASHAWCTSTDKTKLYLFGGSGPHWGQTNMGKLLQFNIRDKNWTIVEAQGTQPPPGYGQSLCAINNKLYLFGGTSGHVYVNDLYVFDEVTKVWKKEETGGKR 208          
BLAST of EWM23434.1 vs. NCBI_GenBank
Match: gi|570968035|gb|ETP31154.1| (hypothetical protein F442_19955 [Phytophthora parasitica P10297])

HSP 1 Score: 157.918 bits (398), Expect = 2.077e-41
Identity = 73/172 (42.44%), Postives = 105/172 (61.05%), Query Frame = 0
Query:  109 SHWTKLKANKDKDREVPKCRSGHACVQIGHYMYIIGGYSDGICFSDVYILDLNSHLWRHVENS-GTVVQGRASHCCCIGPGNRDIYMFGGSGPCWGRTNLGDLCKFDTEKEEWSIMPLRGQMPPPGYGQSLCVYKHRLILFGGTCGSFFYNHLFEYDTKEQVGRRDGVEGRK 279
            S+WTK+  +  +    P  RSGH+ + +G  MY+ GGY+DG C +D+Y  DL  H W H+E S G    GRASH  C       +Y+FGGSGP WG+TN+G L +F    + W+I+  +G  PPPGYGQSLC   ++L LFGGT G  + N L+ +D   +V +++   G++
Sbjct:   41 SNWTKISTSGHR----PPVRSGHSSLVVGDMMYVFGGYNDGNCHNDIYAFDLVRHHWIHIETSNGISPDGRASHAWCTSTDKTKLYLFGGSGPHWGQTNMGKLLQFSIRDKNWTIVEAQGTQPPPGYGQSLCAINNKLYLFGGTSGHVYVNDLYVFDEVTKVWKKEETGGKR 208          
BLAST of EWM23434.1 vs. NCBI_GenBank
Match: gi|570937746|gb|ETP03003.1| (hypothetical protein F441_20006 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 157.918 bits (398), Expect = 2.143e-41
Identity = 73/172 (42.44%), Postives = 105/172 (61.05%), Query Frame = 0
Query:  109 SHWTKLKANKDKDREVPKCRSGHACVQIGHYMYIIGGYSDGICFSDVYILDLNSHLWRHVENS-GTVVQGRASHCCCIGPGNRDIYMFGGSGPCWGRTNLGDLCKFDTEKEEWSIMPLRGQMPPPGYGQSLCVYKHRLILFGGTCGSFFYNHLFEYDTKEQVGRRDGVEGRK 279
            S+WTK+  +  +    P  RSGH+ + +G  MY+ GGY+DG C +D+Y  DL  H W H+E S G    GRASH  C       +Y+FGGSGP WG+TN+G L +F    + W+I+  +G  PPPGYGQSLC   ++L LFGGT G  + N L+ +D   +V +++   G++
Sbjct:   41 SNWTKISTSGHR----PPVRSGHSSLVVGDMMYVFGGYNDGNCHNDIYAFDLVRHHWIHIETSNGISPDGRASHAWCTSTDKTKLYLFGGSGPHWGQTNMGKLLQFSIRDKNWTIVEAQGTQPPPGYGQSLCAINNKLYLFGGTSGHVYVNDLYVFDEVTKVWKKEETGGKR 208          
BLAST of EWM23434.1 vs. NCBI_GenBank
Match: gi|567947712|gb|ETK73486.1| (hypothetical protein L915_19589 [Phytophthora parasitica])

HSP 1 Score: 157.918 bits (398), Expect = 2.166e-41
Identity = 73/172 (42.44%), Postives = 105/172 (61.05%), Query Frame = 0
Query:  109 SHWTKLKANKDKDREVPKCRSGHACVQIGHYMYIIGGYSDGICFSDVYILDLNSHLWRHVENS-GTVVQGRASHCCCIGPGNRDIYMFGGSGPCWGRTNLGDLCKFDTEKEEWSIMPLRGQMPPPGYGQSLCVYKHRLILFGGTCGSFFYNHLFEYDTKEQVGRRDGVEGRK 279
            S+WTK+  +  +    P  RSGH+ + +G  MY+ GGY+DG C +D+Y  DL  H W H+E S G    GRASH  C       +Y+FGGSGP WG+TN+G L +F    + W+I+  +G  PPPGYGQSLC   ++L LFGGT G  + N L+ +D   +V +++   G++
Sbjct:   41 SNWTKISTSGHR----PPVRSGHSSLVVGDMMYVFGGYNDGNCHNDIYAFDLVRHHWIHIETSNGISPDGRASHAWCTSTDKTKLYLFGGSGPHWGQTNMGKLLQFSIRDKNWTIVEAQGTQPPPGYGQSLCAINNKLYLFGGTSGHVYVNDLYVFDEVTKVWKKEETGGKR 208          
BLAST of EWM23434.1 vs. NCBI_GenBank
Match: gi|1214702232|gb|OWZ14461.1| (hypothetical protein PHMEG_00012068 [Phytophthora megakarya])

HSP 1 Score: 157.918 bits (398), Expect = 2.191e-41
Identity = 71/172 (41.28%), Postives = 105/172 (61.05%), Query Frame = 0
Query:  109 SHWTKLKANKDKDREVPKCRSGHACVQIGHYMYIIGGYSDGICFSDVYILDLNSHLWRHVENS-GTVVQGRASHCCCIGPGNRDIYMFGGSGPCWGRTNLGDLCKFDTEKEEWSIMPLRGQMPPPGYGQSLCVYKHRLILFGGTCGSFFYNHLFEYDTKEQVGRRDGVEGRK 279
            S+WTK+  +  +    P  RSGH+ + +G  MY+ GGY+DG C +D+Y  DL  H W H+E S G    GRASH  C       +Y+FGGSGP WG+TN+G L +F+   + W+I+   G  PPPGYGQS+C   ++L LFGGT G  + N L+ +D   ++ +++   G++
Sbjct:   40 SNWTKISTSGHR----PPVRSGHSSLVVGDMMYVFGGYNDGNCHNDIYAFDLVRHHWLHIETSNGISPDGRASHAWCTSTDKTKLYLFGGSGPHWGQTNMGKLLQFNIRDKNWTIVDAEGTQPPPGYGQSMCAINNKLYLFGGTSGHVYVNDLYVFDEVTKIWKKEETSGKR 207          
The following BLAST results are available for this feature:
BLAST of EWM23434.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104461|gb|EWM23434.1|0.000e+0100.00kelch repeat containing protein, partial [Nannochl... [more]
gi|695382277|ref|XP_009517349.1|1.155e-4142.44hypothetical protein PHYSODRAFT_323522 [Phytophtho... [more]
gi|675210655|ref|XP_008914212.1|1.243e-4142.44hypothetical protein PPTG_17991 [Phytophthora para... [more]
gi|566010261|gb|ETI33172.1|1.269e-4142.44hypothetical protein F443_20126 [Phytophthora para... [more]
gi|567976392|gb|ETL26916.1|1.310e-4142.44hypothetical protein L916_19480 [Phytophthora para... [more]
gi|970662353|gb|KUF99748.1|1.501e-4142.44Kelch domain-containing protein 10 [Phytophthora n... [more]
gi|570968035|gb|ETP31154.1|2.077e-4142.44hypothetical protein F442_19955 [Phytophthora para... [more]
gi|570937746|gb|ETP03003.1|2.143e-4142.44hypothetical protein F441_20006 [Phytophthora para... [more]
gi|567947712|gb|ETK73486.1|2.166e-4142.44hypothetical protein L915_19589 [Phytophthora para... [more]
gi|1214702232|gb|OWZ14461.1|2.191e-4141.28hypothetical protein PHMEG_00012068 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7255rna7255Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications