EWM23440.1, cds7234 (CDS) Nannochloropsis gaditana

Overview
NameEWM23440.1
Unique Namecds7234
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:122825..123454 +
Alignment locationCM002471.1:123715..124035 +

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Properties
Property NameValue
Protein idEWM23440.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101245g1.3819.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:122825..123454 +
CM002471.1supercontigCM002471.1:123715..124035 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM23440.1 vs. NCBI_GenBank
Match: gi|585104470|gb|EWM23440.1| (hypothetical protein Naga_101245g1 [Nannochloropsis gaditana])

HSP 1 Score: 624.009 bits (1608), Expect = 0.000e+0
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0 
Query:    1 MQHHGLHLNFRGRAVHKRLYSPGTLFYSRPPSSGSGIRTISASSPLLPGQLLPPARAQGAFPSSPRQHASTVVGMKRQRHSPLSERCCLLLPSLWLLLIIHPPTGQGCPASILKTVDRRPLLSSRPSPSPDDKGGPSPTRSALQLVRVRHSRFLLPPLFPPPSVFAGHLRQLWRRFTHIFHKEIEALTEADPREENILELIRTLPEAVSEGHHETVHSLKRGWAALQHKALEGLLVVGWGGGEEGAEGGGEGRGLSQAVWRSRVAEVEQHATLWVTKRSREHLEQVKILREGGREGGREGGAATWNLLVCLSLARS 316
            MQHHGLHLNFRGRAVHKRLYSPGTLFYSRPPSSGSGIRTISASSPLLPGQLLPPARAQGAFPSSPRQHASTVVGMKRQRHSPLSERCCLLLPSLWLLLIIHPPTGQGCPASILKTVDRRPLLSSRPSPSPDDKGGPSPTRSALQLVRVRHSRFLLPPLFPPPSVFAGHLRQLWRRFTHIFHKEIEALTEADPREENILELIRTLPEAVSEGHHETVHSLKRGWAALQHKALEGLLVVGWGGGEEGAEGGGEGRGLSQAVWRSRVAEVEQHATLWVTKRSREHLEQVKILREGGREGGREGGAATWNLLVCLSLARS
Sbjct:    1 MQHHGLHLNFRGRAVHKRLYSPGTLFYSRPPSSGSGIRTISASSPLLPGQLLPPARAQGAFPSSPRQHASTVVGMKRQRHSPLSERCCLLLPSLWLLLIIHPPTGQGCPASILKTVDRRPLLSSRPSPSPDDKGGPSPTRSALQLVRVRHSRFLLPPLFPPPSVFAGHLRQLWRRFTHIFHKEIEALTEADPREENILELIRTLPEAVSEGHHETVHSLKRGWAALQHKALEGLLVVGWGGGEEGAEGGGEGRGLSQAVWRSRVAEVEQHATLWVTKRSREHLEQVKILREGGREGGREGGAATWNLLVCLSLARS 316
[Close]
BLAST of EWM23440.1 vs. NCBI_GenBank
Match: gi|553188082|ref|XP_005854733.1| (hypothetical protein NGA_0403800, partial [Nannochloropsis gaditana CCMP526] >gi|422294322|gb|EKU21622.1| hypothetical protein NGA_0403800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 398.282 bits (1022), Expect = 4.628e-138
Identity = 205/209 (98.09%), Postives = 205/209 (98.09%), Query Frame = 0 
Query:   33 SGSGIRTISASSPLLPGQLLPPARAQGAFPSSPRQHASTVVGMKRQRHSPLSERCCLLLPSLWLLLIIHPPTGQGCPASILKTVDRRPLLSSRPSPSPDDKGGPSPTRSALQLVRVRHSRFLLPPLFPPPSVFAGHLRQLWRRFTHIFHKEIEALTEADPREENILELIRTLPEAVSEGHHETVHSLKRGWAALQHKALEGLLVVGWGG 241
            SGSGIRTISASSPLLPGQLLPPARAQGAFPSSPRQHASTVVGMKRQRHSPL E CCLLLPSLWLLLIIHPPTGQGCPASILKTVDRRPLLSSRPSPSPDDKGGPSPTRSALQ VRVRHSRFLLPPLFPPPSVFAGHLRQLWRRFTHIFHKEIEALTEADPREENILELIRTLPEAVSEGHHETVHSLKRGWAALQHKALEGLL VGWGG
Sbjct:    1 SGSGIRTISASSPLLPGQLLPPARAQGAFPSSPRQHASTVVGMKRQRHSPLLEGCCLLLPSLWLLLIIHPPTGQGCPASILKTVDRRPLLSSRPSPSPDDKGGPSPTRSALQRVRVRHSRFLLPPLFPPPSVFAGHLRQLWRRFTHIFHKEIEALTEADPREENILELIRTLPEAVSEGHHETVHSLKRGWAALQHKALEGLL-VGWGG 208
The following BLAST results are available for this feature:
BLAST of EWM23440.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104470|gb|EWM23440.1|0.000e+0100.00hypothetical protein Naga_101245g1 [Nannochloropsi... [more]
gi|553188082|ref|XP_005854733.1|4.628e-13898.09hypothetical protein NGA_0403800, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7251rna7251Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications